10 20 30 40 50 60 70 80 2DJV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 05-APR-06 2DJV
TITLE SOLUTION STRUCTURES OF THE WHEP-TRS DOMAIN OF HUMAN TITLE 2 METHIONYL-TRNA SYNTHETASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WHEP-TRS DOMAIN; COMPND 5 SYNONYM: METHIONINE--TRNA LIGASE, METRS; COMPND 6 EC: 6.1.1.10; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MARS; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050704-14; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS EC 6.1.1.10, WHEP-TRS DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.SATO,A.SASAGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DJV 1 VERSN REVDAT 1 05-OCT-06 2DJV 0
JRNL AUTH M.SATO,A.SASAGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE WHEP-TRS DOMAIN OF JRNL TITL 2 HUMAN METHIONYL-TRNA SYNTHETASE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DJV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025500.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM WHWP-TRS DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 65 44.92 34.54 REMARK 500 1 LYS A 72 99.82 -67.49 REMARK 500 2 PRO A 12 1.62 -69.73 REMARK 500 2 LYS A 36 34.37 34.56 REMARK 500 2 GLU A 65 51.68 34.92 REMARK 500 2 LYS A 70 172.40 -57.72 REMARK 500 2 LYS A 72 99.74 -37.04 REMARK 500 3 SER A 5 106.04 -56.25 REMARK 500 3 PRO A 12 0.19 -69.79 REMARK 500 3 PRO A 64 -163.93 -69.72 REMARK 500 4 LYS A 36 41.05 33.99 REMARK 500 4 PRO A 64 -163.80 -69.76 REMARK 500 4 LYS A 71 48.12 -90.89 REMARK 500 4 LYS A 73 157.71 -43.31 REMARK 500 4 PRO A 76 91.53 -69.81 REMARK 500 5 SER A 2 42.00 -84.70 REMARK 500 5 LYS A 36 42.66 34.31 REMARK 500 5 ALA A 44 -38.33 -37.18 REMARK 500 5 PRO A 64 -175.18 -69.74 REMARK 500 5 LYS A 71 48.80 -81.10 REMARK 500 6 SER A 2 114.10 -38.63 REMARK 500 6 PRO A 12 2.09 -69.79 REMARK 500 6 LYS A 36 40.66 39.11 REMARK 500 6 PRO A 64 -174.34 -69.76 REMARK 500 6 PRO A 67 -178.23 -69.76 REMARK 500 6 LYS A 73 40.92 33.86 REMARK 500 7 THR A 8 38.30 -86.25 REMARK 500 7 PRO A 64 -174.31 -69.74 REMARK 500 7 LYS A 72 -58.82 -126.48 REMARK 500 8 SER A 6 -50.24 -127.86 REMARK 500 8 THR A 8 36.05 39.67 REMARK 500 8 MET A 19 -27.05 -39.80 REMARK 500 8 LYS A 36 40.49 37.83 REMARK 500 8 PRO A 64 -175.49 -69.76 REMARK 500 8 ALA A 66 54.26 73.37 REMARK 500 8 LYS A 71 166.84 -43.03 REMARK 500 9 PRO A 12 2.78 -69.71 REMARK 500 9 ALA A 37 171.43 -53.75 REMARK 500 9 PRO A 64 -162.62 -69.74 REMARK 500 10 SER A 3 41.08 38.89 REMARK 500 10 THR A 8 40.35 33.63 REMARK 500 10 PRO A 64 -173.71 -69.72 REMARK 500 10 LYS A 68 141.71 -173.94 REMARK 500 10 LYS A 73 133.46 -35.45 REMARK 500 10 SER A 77 103.95 -47.75 REMARK 500 10 SER A 78 42.25 38.84 REMARK 500 11 GLN A 13 -62.77 -97.01 REMARK 500 11 GLN A 14 -26.60 -38.45 REMARK 500 11 PRO A 64 -167.33 -69.82 REMARK 500 11 PRO A 67 -169.26 -69.68 REMARK 500 11 PRO A 76 95.79 -69.76 REMARK 500 12 LEU A 49 -70.96 -64.12 REMARK 500 12 LEU A 50 -34.79 -35.10 REMARK 500 12 PRO A 64 -171.66 -69.79 REMARK 500 12 ALA A 66 53.24 72.79 REMARK 500 12 LYS A 71 84.92 -62.10 REMARK 500 12 LYS A 73 132.79 -31.32 REMARK 500 13 GLU A 65 33.59 33.87 REMARK 500 14 SER A 2 126.55 -170.08 REMARK 500 14 GLU A 65 27.17 37.84 REMARK 500 14 PRO A 67 2.76 -69.78 REMARK 500 14 SER A 77 43.07 36.00 REMARK 500 15 SER A 2 110.11 -35.18 REMARK 500 15 THR A 9 86.46 -68.54 REMARK 500 15 PRO A 12 2.85 -69.72 REMARK 500 15 LYS A 36 47.50 30.62 REMARK 500 15 LEU A 50 -38.50 -39.56 REMARK 500 15 PRO A 64 -172.38 -69.77 REMARK 500 15 LYS A 70 139.79 -34.38 REMARK 500 15 PRO A 76 1.11 -69.79 REMARK 500 16 PRO A 12 3.39 -69.71 REMARK 500 16 LYS A 36 44.62 38.40 REMARK 500 16 ALA A 37 172.81 -56.18 REMARK 500 16 PRO A 64 -163.77 -69.74 REMARK 500 16 GLU A 65 46.35 -78.27 REMARK 500 16 ALA A 66 91.10 -26.48 REMARK 500 16 LYS A 71 144.59 -34.55 REMARK 500 16 PRO A 76 -176.99 -69.78 REMARK 500 17 SER A 2 152.28 -46.09 REMARK 500 17 THR A 9 108.44 -174.64 REMARK 500 17 LYS A 36 41.87 35.85 REMARK 500 17 PRO A 64 -164.28 -69.79 REMARK 500 17 GLU A 65 46.76 -77.85 REMARK 500 17 ALA A 66 91.09 -26.50 REMARK 500 17 PRO A 67 2.16 -69.76 REMARK 500 17 PRO A 76 1.26 -69.70 REMARK 500 18 PRO A 12 2.86 -69.75 REMARK 500 18 PRO A 64 -164.82 -69.76 REMARK 500 18 GLU A 65 49.78 -78.09 REMARK 500 18 ALA A 66 91.06 -26.50 REMARK 500 18 LYS A 73 70.50 -111.18 REMARK 500 19 LYS A 11 -70.60 -95.79 REMARK 500 19 LYS A 36 28.04 43.18 REMARK 500 19 ALA A 37 159.66 -44.64 REMARK 500 19 PRO A 64 -163.85 -69.75 REMARK 500 20 ALA A 10 118.51 -168.96 REMARK 500 20 PRO A 12 2.97 -69.76 REMARK 500 20 GLN A 13 -67.04 -105.24 REMARK 500 20 GLN A 14 -29.33 -37.33 REMARK 500 20 PRO A 64 -176.78 -69.81 REMARK 500 20 PRO A 67 94.52 -69.71 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002003655.1 RELATED DB: TARGETDB
DBREF 2DJV A 8 73 UNP P56192 SYM_HUMAN 835 900
SEQADV 2DJV GLY A 1 UNP P56192 CLONING ARTIFACT SEQADV 2DJV SER A 2 UNP P56192 CLONING ARTIFACT SEQADV 2DJV SER A 3 UNP P56192 CLONING ARTIFACT SEQADV 2DJV GLY A 4 UNP P56192 CLONING ARTIFACT SEQADV 2DJV SER A 5 UNP P56192 CLONING ARTIFACT SEQADV 2DJV SER A 6 UNP P56192 CLONING ARTIFACT SEQADV 2DJV GLY A 7 UNP P56192 CLONING ARTIFACT SEQADV 2DJV SER A 74 UNP P56192 CLONING ARTIFACT SEQADV 2DJV GLY A 75 UNP P56192 CLONING ARTIFACT SEQADV 2DJV PRO A 76 UNP P56192 CLONING ARTIFACT SEQADV 2DJV SER A 77 UNP P56192 CLONING ARTIFACT SEQADV 2DJV SER A 78 UNP P56192 CLONING ARTIFACT SEQADV 2DJV GLY A 79 UNP P56192 CLONING ARTIFACT
SEQRES 1 A 79 GLY SER SER GLY SER SER GLY THR THR ALA LYS PRO GLN SEQRES 2 A 79 GLN ILE GLN ALA LEU MET ASP GLU VAL THR LYS GLN GLY SEQRES 3 A 79 ASN ILE VAL ARG GLU LEU LYS ALA GLN LYS ALA ASP LYS SEQRES 4 A 79 ASN GLU VAL ALA ALA GLU VAL ALA LYS LEU LEU ASP LEU SEQRES 5 A 79 LYS LYS GLN LEU ALA VAL ALA GLU GLY LYS PRO PRO GLU SEQRES 6 A 79 ALA PRO LYS GLY LYS LYS LYS LYS SER GLY PRO SER SER SEQRES 7 A 79 GLY
HELIX 1 1 ALA A 10 GLN A 35 1 26 HELIX 2 2 ASP A 38 GLY A 61 1 24
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000