10 20 30 40 50 60 70 80 2DJS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 05-APR-06 2DJS
TITLE SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN EPHRIN TYPE- TITLE 2 B RECEPTOR 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III DOMAIN; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR EPH-2, NET, HEK6, COMPND 6 ELK; COMPND 7 EC: 2.7.1.112; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHB1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050912-11; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS TYROSINE-PROTEIN KINASE RECEPTOR EPH-2, NET, HEK6, ELK, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DJS 1 VERSN REVDAT 1 05-OCT-06 2DJS 0
JRNL AUTH M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN JRNL TITL 2 EPHRIN TYPE-B RECEPTOR 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DJS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025497.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FN3 DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 9 -174.87 -56.91 REMARK 500 1 ALA A 19 145.66 -173.92 REMARK 500 1 GLN A 33 56.05 -118.43 REMARK 500 1 PRO A 34 0.38 -69.75 REMARK 500 1 ASP A 102 43.42 -98.08 REMARK 500 2 PRO A 34 2.41 -69.72 REMARK 500 2 SER A 103 -56.75 -125.84 REMARK 500 3 SER A 9 -179.31 -59.85 REMARK 500 3 GLN A 33 53.20 -118.55 REMARK 500 3 PRO A 34 1.97 -69.75 REMARK 500 3 LYS A 94 155.44 -40.67 REMARK 500 4 SER A 3 105.67 -56.91 REMARK 500 4 SER A 9 175.46 -48.80 REMARK 500 4 ALA A 19 142.69 -171.72 REMARK 500 4 PRO A 34 0.43 -69.75 REMARK 500 4 ASN A 35 25.04 42.07 REMARK 500 4 ILE A 37 141.85 -37.63 REMARK 500 4 ASN A 54 49.21 -78.56 REMARK 500 4 SER A 103 149.64 -173.98 REMARK 500 4 SER A 106 47.53 34.62 REMARK 500 5 PRO A 34 0.42 -69.76 REMARK 500 5 ASN A 35 29.36 45.73 REMARK 500 6 SER A 9 -179.46 -64.73 REMARK 500 6 GLN A 33 53.83 -119.95 REMARK 500 6 ILE A 37 107.75 -52.27 REMARK 500 6 ASN A 54 61.42 -104.56 REMARK 500 6 SER A 107 176.66 -59.76 REMARK 500 7 SER A 5 154.86 -41.62 REMARK 500 7 SER A 9 175.69 -50.94 REMARK 500 8 SER A 2 105.74 -36.64 REMARK 500 8 SER A 9 175.57 -51.94 REMARK 500 8 PRO A 34 2.57 -69.76 REMARK 500 8 ASN A 54 48.78 -94.76 REMARK 500 8 PRO A 105 -178.68 -69.73 REMARK 500 8 SER A 106 145.55 -173.36 REMARK 500 9 SER A 2 42.44 -88.71 REMARK 500 9 ALA A 19 145.75 -175.03 REMARK 500 9 PRO A 34 0.83 -69.75 REMARK 500 9 ASN A 35 25.31 42.79 REMARK 500 9 ILE A 37 134.46 -39.97 REMARK 500 9 ASP A 102 39.44 -86.90 REMARK 500 10 ALA A 19 146.59 -172.30 REMARK 500 10 PRO A 29 -179.45 -69.75 REMARK 500 10 GLN A 33 51.11 -119.55 REMARK 500 10 PRO A 34 2.35 -69.81 REMARK 500 10 SER A 107 176.17 -55.78 REMARK 500 11 SER A 9 171.08 -56.88 REMARK 500 12 GLN A 33 50.41 -119.55 REMARK 500 12 PRO A 34 2.40 -69.78 REMARK 500 12 ASN A 54 53.93 -104.36 REMARK 500 13 SER A 9 158.61 -46.16 REMARK 500 13 ALA A 19 146.73 -174.73 REMARK 500 13 GLN A 33 50.58 -118.29 REMARK 500 13 ASN A 54 51.95 -92.80 REMARK 500 13 SER A 106 41.97 -103.78 REMARK 500 14 SER A 9 174.34 -57.87 REMARK 500 14 PRO A 34 0.80 -69.70 REMARK 500 14 ILE A 37 143.22 -39.13 REMARK 500 14 GLU A 47 122.88 -36.36 REMARK 500 14 ASN A 54 55.11 -104.63 REMARK 500 14 LYS A 94 132.20 -38.01 REMARK 500 14 THR A 99 -179.71 -61.73 REMARK 500 15 SER A 2 94.31 -65.47 REMARK 500 15 SER A 9 176.58 -48.99 REMARK 500 15 VAL A 11 138.06 -36.39 REMARK 500 15 GLN A 33 56.87 -118.80 REMARK 500 15 ILE A 37 105.10 -56.15 REMARK 500 15 ASN A 54 66.11 -102.58 REMARK 500 16 SER A 9 -177.22 -55.47 REMARK 500 16 PRO A 34 2.97 -69.81 REMARK 500 16 GLU A 47 140.22 -38.31 REMARK 500 16 ASN A 54 41.37 -102.58 REMARK 500 17 SER A 6 33.99 37.86 REMARK 500 17 SER A 9 161.25 -48.73 REMARK 500 17 PRO A 34 2.40 -69.75 REMARK 500 17 ASN A 35 28.32 48.99 REMARK 500 17 SER A 103 37.84 36.86 REMARK 500 18 SER A 3 113.96 -173.64 REMARK 500 18 SER A 6 106.10 -59.27 REMARK 500 18 SER A 9 168.15 -47.48 REMARK 500 18 LYS A 94 131.77 -37.76 REMARK 500 18 ASP A 102 47.66 -83.03 REMARK 500 18 SER A 103 -66.98 -94.82 REMARK 500 19 SER A 9 -176.29 -59.41 REMARK 500 19 PRO A 34 2.09 -69.73 REMARK 500 19 ASN A 35 27.50 48.13 REMARK 500 19 ILE A 37 107.16 -57.17 REMARK 500 20 SER A 9 172.59 -48.13 REMARK 500 20 ALA A 19 149.04 -174.46 REMARK 500 20 PRO A 34 0.90 -69.81 REMARK 500 20 ASN A 35 29.01 46.65 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001071.1 RELATED DB: TARGETDB
DBREF 2DJS A 8 102 UNP P54762 EPHB1_HUMAN 434 528
SEQADV 2DJS GLY A 1 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 2 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 3 UNP P54762 CLONING ARTIFACT SEQADV 2DJS GLY A 4 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 5 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 6 UNP P54762 CLONING ARTIFACT SEQADV 2DJS GLY A 7 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 103 UNP P54762 CLONING ARTIFACT SEQADV 2DJS GLY A 104 UNP P54762 CLONING ARTIFACT SEQADV 2DJS PRO A 105 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 106 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 107 UNP P54762 CLONING ARTIFACT SEQADV 2DJS GLY A 108 UNP P54762 CLONING ARTIFACT
SEQRES 1 A 108 GLY SER SER GLY SER SER GLY PRO SER THR VAL PRO ILE SEQRES 2 A 108 MET HIS GLN VAL SER ALA THR MET ARG SER ILE THR LEU SEQRES 3 A 108 SER TRP PRO GLN PRO GLU GLN PRO ASN GLY ILE ILE LEU SEQRES 4 A 108 ASP TYR GLU ILE ARG TYR TYR GLU LYS GLU HIS ASN GLU SEQRES 5 A 108 PHE ASN SER SER MET ALA ARG SER GLN THR ASN THR ALA SEQRES 6 A 108 ARG ILE ASP GLY LEU ARG PRO GLY MET VAL TYR VAL VAL SEQRES 7 A 108 GLN VAL ARG ALA ARG THR VAL ALA GLY TYR GLY LYS PHE SEQRES 8 A 108 SER GLY LYS MET CYS PHE GLN THR LEU THR ASP SER GLY SEQRES 9 A 108 PRO SER SER GLY
SHEET 1 A 3 HIS A 15 ALA A 19 0 SHEET 2 A 3 SER A 23 SER A 27 -1 O SER A 27 N HIS A 15 SHEET 3 A 3 THR A 64 ASP A 68 -1 O ILE A 67 N ILE A 24 SHEET 1 B 4 SER A 56 SER A 60 0 SHEET 2 B 4 ILE A 38 GLU A 47 -1 N ILE A 43 O ALA A 58 SHEET 3 B 4 VAL A 75 THR A 84 -1 O ARG A 81 N GLU A 42 SHEET 4 B 4 TYR A 88 PHE A 91 -1 O GLY A 89 N ALA A 82 SHEET 1 C 4 SER A 56 SER A 60 0 SHEET 2 C 4 ILE A 38 GLU A 47 -1 N ILE A 43 O ALA A 58 SHEET 3 C 4 VAL A 75 THR A 84 -1 O ARG A 81 N GLU A 42 SHEET 4 C 4 MET A 95 GLN A 98 -1 O PHE A 97 N TYR A 76
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000