10 20 30 40 50 60 70 80 2DJD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MEMBRANE PROTEIN 31-MAR-06 2DJD
TITLE THREE DIMENSIONAL STRUCTURE OF VOLTAGE GATED SODIUM CHANNEL TITLE 2 OF ANOPHELES GAMBIAE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENSANGP00000024823; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANOPHELES GAMBIAE; SOURCE 3 ORGANISM_COMMON: AFRICAN MALARIA MOSQUITO; SOURCE 4 STRAIN: PEST
KEYWDS VGSC, ANOPHELES GAMBIAE, KDR
EXPDTA THEORETICAL MODEL
AUTHOR S.SENTHIL VELMURUGAN,K.GUNASEKARAN,S.MUTHUKUMARAVEL
REVDAT 1 25-APR-06 2DJD 0
JRNL AUTH S.SENTHIL VELMURUGAN,K.GUNASEKARAN,S.MUTHUKUMARAVEL JRNL TITL THREE DIAMENSIONAL STRUCTURE OF VOLTAGE GATED JRNL TITL 2 SODIUM CHANNEL OF ANOPHELES GAMBIAE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPDBV V3.7, MODELLER 8V2 REMARK 3 AUTHORS : RUTGERS (SPDBV), ANDREJ SALI (MODELLER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING
REMARK 4 REMARK 4 2DJD COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-2006. REMARK 100 THE RCSB ID CODE IS RCSB025482.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: STRUCTURE OF DOMAIN I-IV OF VOLTAGE GATED SODIUM CHANNEL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 841 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 80 -44.59 68.70 REMARK 500 PHE A 232 -39.51 66.89 REMARK 500 ILE A 255 -50.23 142.09 REMARK 500 LEU A 259 -30.15 70.51 REMARK 500 ALA A 377 161.55 73.04 REMARK 500 ILE A 385 -172.15 102.02 REMARK 500 ASN A 529 -42.71 69.94 REMARK 500 VAL A 547 -30.87 70.37 REMARK 500 THR A 637 -83.01 61.51 REMARK 500 ASN A 703 -39.30 75.45 REMARK 500 TYR A1083 -83.37 61.50 REMARK 500 GLU A1199 -130.83 173.09
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ORQ:C RELATED DB: PDB REMARK 900 VOLTAGE GATED POTASSIUM CHANNEL OF AEROPYRUM PERNIX AT 3.2A REMARK 900 OF ALL SEGMENTS REMARK 900 RELATED ID: 1ZAS RELATED DB: PDB REMARK 900 THREE DIMENSIONAL STRUCTURE OF VOLTAGE GATED SODIUM CHANNEL REMARK 900 (DOMAIN II) OF ANOPHELES GAMBIAE REMARK 900 RELATED ID: 1SEX RELATED DB: PDB REMARK 900 STRUCTURE OF VOLTAGE GATED SODIUM CHANNEL OF ANOPHELES REMARK 900 GAMBIAE
DBREF 2DJD A 1 1249 UNP Q7PJH0 Q7PJH0_ANOGA 1 1249
SEQRES 1 A 1249 VAL SER VAL TYR TYR PHE PRO THR GLU ASP ASP ASP GLU SEQRES 2 A 1249 ASP GLY PRO THR PHE LYS ASP LYS ALA LEU GLU PHE LEU SEQRES 3 A 1249 MET LYS MET ILE ASP ILE PHE CYS VAL TRP ASP CYS CYS SEQRES 4 A 1249 TRP VAL TRP LEU LYS PHE GLN GLU TRP VAL ALA PHE ILE SEQRES 5 A 1249 VAL PHE ASP PRO PHE VAL GLU LEU PHE ILE THR LEU CYS SEQRES 6 A 1249 ILE VAL VAL ASN THR LEU PHE MET ALA LEU ASP HIS HIS SEQRES 7 A 1249 ASP MET ASP PRO ASP MET GLU LYS ALA LEU LYS SER GLY SEQRES 8 A 1249 ASN TYR PHE PHE THR ALA THR PHE ALA ILE GLU ALA THR SEQRES 9 A 1249 MET LYS LEU ILE ALA MET SER PRO LYS TYR TYR PHE GLN SEQRES 10 A 1249 GLU GLY TRP ASN ILE PHE ASP PHE ILE ILE VAL ALA LEU SEQRES 11 A 1249 SER LEU LEU GLU LEU GLY LEU GLU GLY VAL GLN GLY LEU SEQRES 12 A 1249 SER VAL LEU ARG SER PHE ARG LEU LEU ARG VAL PHE LYS SEQRES 13 A 1249 LEU ALA LYS SER TRP PRO THR LEU ASN LEU LEU ILE SER SEQRES 14 A 1249 ILE MET GLY ARG THR MET GLY ALA LEU GLY ASN LEU THR SEQRES 15 A 1249 PHE VAL LEU CYS ILE ILE ILE PHE ILE PHE ALA VAL MET SEQRES 16 A 1249 GLY MET GLN LEU PHE GLY LYS ASN TYR VAL ASP ASN VAL SEQRES 17 A 1249 ASP ARG PHE PRO ASP HIS ASP LEU PRO ARG TRP ASN PHE SEQRES 18 A 1249 THR ASP PHE MET HIS SER PHE MET ILE VAL PHE ARG VAL SEQRES 19 A 1249 LEU CYS GLY GLU TRP ILE GLU SER MET TRP ASP CYS MET SEQRES 20 A 1249 LEU VAL GLY ASP VAL SER CYS ILE PRO PHE PHE LEU ALA SEQRES 21 A 1249 THR VAL VAL ILE GLY ASN LEU VAL VAL LEU ASN LEU PHE SEQRES 22 A 1249 LEU ALA LEU LEU LEU SER ASN PHE GLY SER SER SER LEU SEQRES 23 A 1249 SER ALA PRO THR ALA ASP ASN GLU THR ASN LYS ILE ALA SEQRES 24 A 1249 GLU ALA PHE ASN ARG ILE SER ARG PHE SER ASN TRP ILE SEQRES 25 A 1249 LYS MET ASN LEU ALA ASN ALA LEU LYS PHE VAL LYS ASN SEQRES 26 A 1249 LYS LEU THR SER GLN ILE ALA SER VAL GLN PRO THR ASP SEQRES 27 A 1249 ASP ASN ASN ASP ASN VAL LEU CYS GLY LEU LEU ALA VAL SEQRES 28 A 1249 CYS LYS GLY VAL CYS PRO CYS ILE SER SER GLU HIS GLY SEQRES 29 A 1249 GLU ASN GLU LEU GLU LEU THR PRO ASP ASP ILE LEU ALA SEQRES 30 A 1249 ASP GLY LEU LEU LYS LYS GLY ILE LYS GLU HIS ASN GLN SEQRES 31 A 1249 LEU GLU VAL ALA ILE GLY ASP GLY MET GLU PHE THR ILE SEQRES 32 A 1249 HIS GLY ASP LEU LYS ASN LYS ALA LYS LYS ASN LYS GLN SEQRES 33 A 1249 ILE MET ASN ASN SER LYS ASP ASP ASP THR ALA SER ILE SEQRES 34 A 1249 LYS SER TYR GLY SER HIS LYS ASN ARG PRO PHE LYS ASP SEQRES 35 A 1249 GLU SER HIS LYS GLY SER ALA GLU THR MET GLU GLY GLU SEQRES 36 A 1249 GLU LYS ARG ASP ALA SER LYS GLU ASP LEU GLY ILE ASP SEQRES 37 A 1249 GLU GLU LEU ASP ASP GLU GLY GLU GLY ASP GLU GLY PRO SEQRES 38 A 1249 LEU ASP GLY GLU LEU ILE ILE HIS ALA GLU GLU ASP GLU SEQRES 39 A 1249 VAL ILE GLU ASP SER PRO ALA ASP CYS CYS PRO ASP ASN SEQRES 40 A 1249 CYS TYR LYS LYS PHE PRO VAL LEU ALA GLY ASP ASP ASP SEQRES 41 A 1249 ALA PRO PHE TRP GLN GLY TRP GLY ASN LEU ARG LEU LYS SEQRES 42 A 1249 THR PHE GLN LEU ILE GLU ASN LYS TYR PHE GLU THR ALA SEQRES 43 A 1249 VAL ILE THR MET ILE LEU LEU SER SER LEU ALA LEU ALA SEQRES 44 A 1249 LEU GLU ASP VAL HIS LEU PRO GLN ARG PRO ILE LEU GLN SEQRES 45 A 1249 ASP ILE LEU TYR TYR MET ASP ARG ILE PHE THR VAL ILE SEQRES 46 A 1249 PHE PHE LEU GLU MET LEU ILE LYS TRP LEU ALA LEU GLY SEQRES 47 A 1249 PHE LYS VAL TYR PHE THR ASN ALA TRP CYS TRP LEU ASP SEQRES 48 A 1249 PHE ILE ILE VAL MET VAL SER LEU ILE ASN PHE VAL ALA SEQRES 49 A 1249 SER LEU CYS GLY ALA GLY GLY ILE GLN ALA PHE LYS THR SEQRES 50 A 1249 MET ARG THR LEU ARG ALA LEU ARG PRO LEU ARG ALA MET SEQRES 51 A 1249 SER ARG MET GLN GLY MET ARG VAL VAL VAL ASN ALA LEU SEQRES 52 A 1249 VAL GLN ALA ILE PRO SER ILE PHE ASN VAL LEU LEU VAL SEQRES 53 A 1249 CYS LEU ILE PHE TRP LEU ILE PHE ALA ILE MET GLY VAL SEQRES 54 A 1249 GLN LEU PHE ALA GLY LYS TYR PHE LYS CYS VAL ASP LYS SEQRES 55 A 1249 ASN LYS THR THR LEU PRO HIS GLU ILE ILE PRO ASP VAL SEQRES 56 A 1249 ASN ALA CYS LYS ALA GLU ASN TYR SER TRP GLU ASN SER SEQRES 57 A 1249 PRO MET ASN PHE ASP HIS VAL GLY LYS ALA TYR LEU CYS SEQRES 58 A 1249 LEU PHE GLN VAL ALA THR PHE LYS GLY TRP ILE GLN ILE SEQRES 59 A 1249 MET ASN ASP ALA ILE ASP SER ARG ASP VAL GLY LYS GLN SEQRES 60 A 1249 PRO ILE ARG GLU THR ASN ILE TYR MET TYR LEU TYR PHE SEQRES 61 A 1249 VAL PHE PHE ILE ILE PHE GLY SER PHE PHE THR LEU ASN SEQRES 62 A 1249 LEU PHE ILE GLY VAL ILE ILE ASP ASN PHE ASN GLU GLN SEQRES 63 A 1249 LYS LYS LYS ALA GLY GLY SER LEU GLU MET PHE MET THR SEQRES 64 A 1249 GLU ASP GLN LYS LYS TYR TYR ASN ALA MET LYS LYS MET SEQRES 65 A 1249 GLY SER LYS LYS PRO LEU LYS ALA ILE PRO ARG PRO ARG SEQRES 66 A 1249 TRP ARG PRO GLN ALA ILE VAL PHE GLU ILE VAL THR ASN SEQRES 67 A 1249 LYS LYS PHE ASP MET ILE ILE MET LEU PHE ILE GLY PHE SEQRES 68 A 1249 ASN MET LEU THR MET THR LEU ASP HIS TYR LYS GLN SER SEQRES 69 A 1249 GLU THR PHE SER ALA VAL LEU ASP TYR LEU ASN MET ILE SEQRES 70 A 1249 PHE ILE CYS ILE PHE SER SER GLU CYS LEU MET LYS ILE SEQRES 71 A 1249 PHE ALA LEU ARG TYR HIS TYR PHE ILE GLU PRO TRP ASN SEQRES 72 A 1249 LEU PHE ASP PHE VAL VAL VAL ILE LEU SER ILE LEU GLY SEQRES 73 A 1249 LEU VAL LEU SER ASP ILE ILE GLU LYS TYR PHE VAL SER SEQRES 74 A 1249 PRO THR LEU LEU ARG VAL VAL ARG VAL ALA LYS VAL GLY SEQRES 75 A 1249 ARG VAL LEU ARG LEU VAL LYS GLY ALA LYS GLY ILE ARG SEQRES 76 A 1249 THR LEU LEU PHE ALA LEU ALA MET SER LEU PRO ALA LEU SEQRES 77 A 1249 PHE ASN ILE CYS LEU LEU LEU PHE LEU VAL MET PHE ILE SEQRES 78 A 1249 PHE ALA ILE PHE GLY MET SER PHE PHE MET HIS VAL LYS SEQRES 79 A 1249 ASP LYS SER GLY LEU ASP ASP VAL TYR ASN PHE LYS THR SEQRES 80 A 1249 PHE GLY GLN SER MET ILE LEU LEU PHE GLN MET SER THR SEQRES 81 A 1249 SER ALA GLY TRP ASP GLY VAL LEU ASP GLY ILE ILE ASN SEQRES 82 A 1249 GLU GLU ASP CYS LEU PRO PRO ASP ASN ASP LYS GLY TYR SEQRES 83 A 1249 PRO GLY ASN CYS GLY SER SER THR ILE GLY ILE THR TYR SEQRES 84 A 1249 LEU LEU ALA TYR LEU VAL ILE SER PHE LEU ILE VAL ILE SEQRES 85 A 1249 ASN MET TYR ILE ALA VAL ILE LEU GLU ASN TYR SER GLN SEQRES 86 A 1249 ALA THR GLU ASP VAL GLN GLU GLY LEU THR ASP ASP ASP SEQRES 87 A 1249 TYR ASP MET TYR TYR GLU ILE TRP GLN GLN PHE ASP PRO SEQRES 88 A 1249 ASP GLY THR GLN TYR VAL ARG TYR ASP GLN LEU SER ASP SEQRES 89 A 1249 PHE LEU ASP VAL LEU GLU PRO PRO LEU GLN ILE HIS LYS SEQRES 90 A 1249 PRO ASN ARG TYR LYS ILE ILE SER MET ASP ILE PRO ILE SEQRES 91 A 1249 CYS ARG GLY ASP MET MET PHE CYS VAL ASP ILE LEU ASP SEQRES 92 A 1249 ALA LEU THR LYS ASP PHE PHE ALA ARG LYS GLY ASN PRO SEQRES 93 A 1249 ILE GLU GLU THR ALA GLU LEU GLY GLU VAL GLN GLN ARG SEQRES 94 A 1249 PRO ASP GLU VAL GLY TYR GLU PRO VAL SER SER THR LEU SEQRES 95 A 1249 TRP ARG GLN ARG GLU GLU TYR CYS ALA ARG LEU ILE GLN SEQRES 96 A 1249 HIS ALA TRP LYS ARG TYR LYS GLN ARG HIS GLY GLY GLY SEQRES 97 A 1249 THR
HELIX 1 1 PHE A 6 PHE A 18 1 13 HELIX 2 2 PHE A 25 TRP A 36 1 12 HELIX 3 3 TRP A 40 ILE A 52 1 13 HELIX 4 4 PHE A 61 PHE A 72 1 12 HELIX 5 5 MET A 73 HIS A 77 5 5 HELIX 6 6 MET A 80 LEU A 88 1 9 HELIX 7 7 LYS A 89 SER A 111 1 23 HELIX 8 8 TYR A 114 GLU A 138 1 25 HELIX 9 9 GLN A 141 ARG A 153 1 13 HELIX 10 10 ARG A 153 GLY A 172 1 20 HELIX 11 11 GLY A 176 CYS A 186 1 11 HELIX 12 12 MET A 195 VAL A 231 1 37 HELIX 13 13 GLU A 241 ILE A 255 1 15 HELIX 14 14 GLY A 265 SER A 284 1 20 HELIX 15 15 THR A 295 ASN A 303 1 9 HELIX 16 16 SER A 306 ILE A 312 1 7 HELIX 17 17 ASN A 318 LYS A 324 1 7 HELIX 18 18 THR A 328 GLN A 335 1 8 HELIX 19 19 ALA A 350 CYS A 356 1 7 HELIX 20 20 GLY A 379 ILE A 385 1 7 HELIX 21 21 LYS A 386 GLY A 405 1 20 HELIX 22 22 ASP A 406 LYS A 408 5 3 HELIX 23 23 LYS A 412 ASN A 419 1 8 HELIX 24 24 ASP A 425 LYS A 430 1 6 HELIX 25 25 THR A 451 GLU A 455 5 5 HELIX 26 26 SER A 461 ASP A 468 1 8 HELIX 27 27 ILE A 488 ASP A 498 1 11 HELIX 28 28 GLY A 526 TYR A 542 1 17 HELIX 29 29 VAL A 547 GLU A 561 1 15 HELIX 30 30 GLN A 572 TYR A 602 1 31 HELIX 31 31 THR A 604 GLY A 630 1 27 HELIX 32 32 ALA A 643 ALA A 662 1 20 HELIX 33 33 GLN A 665 ILE A 683 1 19 HELIX 34 34 ALA A 685 THR A 705 1 21 HELIX 35 35 GLU A 710 TYR A 723 1 14 HELIX 36 36 HIS A 734 THR A 747 1 14 HELIX 37 37 ARG A 762 GLN A 767 1 6 HELIX 38 38 THR A 772 ILE A 796 1 25 HELIX 39 39 LYS A 823 ILE A 841 1 19 HELIX 40 40 ILE A 841 VAL A 856 1 16 HELIX 41 41 LEU A 867 PHE A 898 1 32 HELIX 42 42 ILE A 899 CYS A 906 1 8 HELIX 43 43 ALA A 912 ASP A 926 1 15 HELIX 44 44 VAL A 930 GLU A 944 1 15 HELIX 45 45 PHE A 947 VAL A 955 1 9 HELIX 46 46 VAL A 964 GLY A 970 1 7 HELIX 47 47 GLY A 973 CYS A 992 1 20 HELIX 48 48 LEU A 993 GLY A 1018 1 26 HELIX 49 49 PHE A 1028 SER A 1039 1 12 HELIX 50 50 GLY A 1043 ASN A 1069 1 27 HELIX 51 51 ILE A 1086 ILE A 1096 1 11 HELIX 52 52 ILE A 1096 GLN A 1105 1 10 HELIX 53 53 ASP A 1109 TYR A 1123 1 15 HELIX 54 54 GLY A 1133 SER A 1143 1 11 HELIX 55 55 LEU A 1149 LYS A 1157 1 9 HELIX 56 56 ASP A 1167 VAL A 1179 1 13 HELIX 57 57 ASP A 1183 ASN A 1195 1 13 HELIX 58 58 GLU A 1205 GLU A 1216 1 12 HELIX 59 59 SER A 1220 ARG A 1232 1 13 HELIX 60 60 ARG A 1240 GLY A 1246 1 7
SHEET 1 A 2 ALA A 22 GLU A 24 0 SHEET 2 A 2 VAL A 58 LEU A 60 -1 O GLU A 59 N LEU A 23 SHEET 1 B 2 LYS A 410 ALA A 411 0 SHEET 2 B 2 LEU A 482 ASP A 483 1 O ASP A 483 N LYS A 410 SHEET 1 C 2 VAL A 958 ALA A 959 0 SHEET 2 C 2 GLY A 962 ARG A 963 -1 O GLY A 962 N ALA A 959 SHEET 1 D 2 ASP A1130 PRO A1131 0 SHEET 2 D 2 SER A1165 MET A1166 -1 O MET A1166 N ASP A1130 SHEET 1 E 2 GLU A1202 GLY A1204 0 SHEET 2 E 2 ALA A1237 LYS A1239 -1 O TRP A1238 N LEU A1203
CISPEP 1 PHE A 72 MET A 73 0 5.69 CISPEP 2 ASP A 423 ASP A 424 0 -13.37
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000