10 20 30 40 50 60 70 80 2DJ3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 30-MAR-06 2DJ3
TITLE THE SOLUTION STRUCTURE OF THE THIRD THIOREDOXIN DOMAIN OF TITLE 2 MOUSE PROTEIN DISULFIDE-ISOMERASE A4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE-ISOMERASE A4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 3RD THIOREDOXIN DOMAIN; COMPND 5 SYNONYM: PROTEIN ERP-72, ERP72; COMPND 6 EC: 5.3.4.1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PDIA4, CAI, ERP72; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050425-15; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PROTEIN ERP-72, ERP72, CAI, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, ISOMERASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.TOCHIO,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DJ3 1 VERSN REVDAT 1 30-SEP-06 2DJ3 0
JRNL AUTH N.TOCHIO,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE THIRD THIOREDOXIN JRNL TITL 2 DOMAIN OF MOUSE PROTEIN DISULFIDE-ISOMERASE A4 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DJ3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025472.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM THIOREDOXIN DOMAIN U- REMARK 210 15N,13C; 20MM D-TRIS HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 20 -69.74 -96.11 REMARK 500 1 PRO A 24 2.06 -69.76 REMARK 500 1 PRO A 35 0.47 -69.76 REMARK 500 1 ILE A 72 97.30 -67.68 REMARK 500 1 ASN A 74 179.54 -50.52 REMARK 500 1 SER A 90 103.69 -53.78 REMARK 500 1 LYS A 94 -27.38 -38.17 REMARK 500 1 ALA A 117 -175.22 -65.83 REMARK 500 1 THR A 118 41.56 -80.55 REMARK 500 1 ARG A 122 96.25 -69.31 REMARK 500 1 SER A 128 42.44 -98.67 REMARK 500 2 ILE A 20 -69.74 -96.06 REMARK 500 2 PRO A 24 3.04 -69.79 REMARK 500 2 ASN A 74 170.73 -50.24 REMARK 500 2 SER A 90 103.75 -51.41 REMARK 500 2 ARG A 122 162.85 -44.70 REMARK 500 2 LEU A 127 128.11 -173.80 REMARK 500 3 SER A 3 -57.15 -125.40 REMARK 500 3 ILE A 20 -69.92 -93.21 REMARK 500 3 PRO A 24 3.81 -69.70 REMARK 500 3 PRO A 35 2.88 -69.71 REMARK 500 3 ILE A 72 99.59 -61.39 REMARK 500 3 ASN A 74 -176.29 -51.95 REMARK 500 3 ASP A 75 -34.07 -132.67 REMARK 500 3 SER A 90 106.60 -43.20 REMARK 500 3 LYS A 94 -30.14 -37.79 REMARK 500 3 LYS A 124 43.91 -99.34 REMARK 500 3 SER A 131 100.86 -36.61 REMARK 500 4 SER A 6 112.94 -39.42 REMARK 500 4 ILE A 20 -68.98 -96.08 REMARK 500 4 PRO A 24 4.47 -69.73 REMARK 500 4 PRO A 35 0.97 -69.77 REMARK 500 4 SER A 90 104.03 -46.18 REMARK 500 4 THR A 118 48.08 -75.39 REMARK 500 4 PRO A 130 92.51 -69.75 REMARK 500 5 SER A 5 80.58 -65.51 REMARK 500 5 ILE A 20 -70.85 -93.76 REMARK 500 5 PRO A 24 8.71 -69.74 REMARK 500 5 PRO A 35 1.97 -69.74 REMARK 500 5 ASN A 74 -178.45 -50.19 REMARK 500 5 SER A 90 107.71 -54.71 REMARK 500 5 LYS A 94 -33.36 -33.90 REMARK 500 5 ALA A 117 -175.53 -68.65 REMARK 500 5 GLU A 126 45.88 35.81 REMARK 500 5 SER A 128 148.97 -174.05 REMARK 500 5 PRO A 130 89.89 -69.73 REMARK 500 6 ILE A 20 -69.51 -94.82 REMARK 500 6 PRO A 24 3.13 -69.78 REMARK 500 6 PRO A 35 1.38 -69.79 REMARK 500 6 ASN A 74 172.19 -56.77 REMARK 500 6 SER A 90 104.71 -47.40 REMARK 500 6 LYS A 94 -26.48 -38.52 REMARK 500 6 ARG A 104 79.89 -118.73 REMARK 500 6 ALA A 117 -173.80 -60.57 REMARK 500 6 THR A 118 48.61 -75.48 REMARK 500 6 SER A 121 -177.97 -67.02 REMARK 500 7 ILE A 20 -69.64 -95.44 REMARK 500 7 PRO A 24 3.87 -69.81 REMARK 500 7 ASN A 74 177.70 -48.69 REMARK 500 7 SER A 90 107.79 -52.95 REMARK 500 7 LYS A 94 -36.22 -34.24 REMARK 500 7 ARG A 104 72.34 -115.87 REMARK 500 7 ALA A 117 -174.90 -56.01 REMARK 500 7 THR A 118 32.64 -91.94 REMARK 500 7 LYS A 119 26.91 38.30 REMARK 500 7 SER A 128 -60.15 -96.29 REMARK 500 8 ILE A 20 -69.18 -96.38 REMARK 500 8 PRO A 24 4.12 -69.75 REMARK 500 8 LYS A 26 149.99 -173.44 REMARK 500 8 SER A 90 107.84 -47.69 REMARK 500 8 LYS A 94 -39.74 -38.19 REMARK 500 8 SER A 121 134.33 -39.90 REMARK 500 8 GLU A 125 102.22 -51.83 REMARK 500 9 ILE A 20 -69.61 -94.62 REMARK 500 9 PRO A 24 5.73 -69.69 REMARK 500 9 PRO A 35 0.52 -69.71 REMARK 500 9 ALA A 69 -33.93 -130.59 REMARK 500 9 ASN A 74 -174.96 -53.67 REMARK 500 9 ASP A 75 -37.85 -130.96 REMARK 500 9 SER A 90 107.36 -53.93 REMARK 500 9 ALA A 117 165.02 -45.97 REMARK 500 9 SER A 121 144.95 -35.67 REMARK 500 9 LEU A 127 42.86 -93.29 REMARK 500 10 ILE A 20 -69.54 -96.04 REMARK 500 10 PRO A 24 7.10 -69.76 REMARK 500 10 PRO A 35 1.75 -69.81 REMARK 500 10 ILE A 72 90.52 -68.03 REMARK 500 10 ASN A 74 -178.25 -60.64 REMARK 500 10 ASP A 75 -33.92 -131.92 REMARK 500 10 SER A 90 107.54 -47.80 REMARK 500 10 GLU A 100 -70.59 -96.81 REMARK 500 10 ASP A 114 -38.19 -37.62 REMARK 500 10 THR A 118 46.85 -78.37 REMARK 500 10 LYS A 119 47.15 35.04 REMARK 500 10 ARG A 120 73.00 -104.49 REMARK 500 10 THR A 123 133.54 -39.38 REMARK 500 10 SER A 131 141.34 -171.84 REMARK 500 11 SER A 2 91.55 -65.84 REMARK 500 11 ILE A 20 -69.66 -93.60 REMARK 500 11 PRO A 24 3.26 -69.73 REMARK 500 11 PRO A 35 0.49 -69.69 REMARK 500 11 ILE A 72 89.41 -59.65 REMARK 500 11 ASN A 74 -179.83 -61.76 REMARK 500 11 SER A 90 107.84 -52.53 REMARK 500 11 LYS A 94 -37.69 -36.04 REMARK 500 11 GLU A 100 53.97 -105.80 REMARK 500 11 THR A 118 35.22 -82.99 REMARK 500 11 LYS A 119 31.02 36.07 REMARK 500 11 SER A 131 46.79 -98.52 REMARK 500 12 ILE A 20 -66.71 -96.22 REMARK 500 12 PRO A 24 3.41 -69.76 REMARK 500 12 PRO A 35 0.76 -69.74 REMARK 500 12 ASN A 74 173.48 -46.46 REMARK 500 12 SER A 90 104.18 -51.41 REMARK 500 12 LYS A 94 -36.21 -35.62 REMARK 500 12 GLU A 100 43.27 -105.53 REMARK 500 12 THR A 118 44.11 -79.20 REMARK 500 12 LYS A 119 52.81 33.48 REMARK 500 12 LEU A 127 94.00 -36.56 REMARK 500 12 SER A 128 -178.16 -175.10 REMARK 500 13 SER A 2 -60.36 -97.53 REMARK 500 13 ILE A 20 -70.79 -96.72 REMARK 500 13 LYS A 94 -29.99 -36.34 REMARK 500 13 ASN A 103 105.87 -54.93 REMARK 500 13 ALA A 117 -77.17 -89.78 REMARK 500 13 LYS A 119 42.99 37.18 REMARK 500 13 GLU A 126 145.29 -175.03 REMARK 500 14 ILE A 20 -69.94 -95.34 REMARK 500 14 PRO A 24 3.04 -69.73 REMARK 500 14 HIS A 39 -25.72 -38.65 REMARK 500 14 ASP A 59 54.15 38.56 REMARK 500 14 SER A 90 102.94 -48.51 REMARK 500 14 ARG A 104 56.29 -112.71 REMARK 500 14 ALA A 117 -175.61 -66.67 REMARK 500 14 THR A 118 44.40 -80.63 REMARK 500 14 LYS A 124 54.10 37.89 REMARK 500 15 ILE A 20 -70.67 -96.17 REMARK 500 15 CYS A 40 -36.78 -37.01 REMARK 500 15 ASN A 74 179.18 -52.39 REMARK 500 15 SER A 90 106.86 -59.20 REMARK 500 15 LYS A 94 -33.43 -37.38 REMARK 500 15 GLU A 100 79.69 -119.31 REMARK 500 15 GLU A 115 -74.34 -49.42 REMARK 500 15 ALA A 117 -174.91 -60.51 REMARK 500 15 ARG A 122 129.97 -36.34 REMARK 500 15 GLU A 125 51.64 34.61 REMARK 500 15 SER A 131 -61.35 -120.12 REMARK 500 16 ILE A 20 -67.84 -96.12 REMARK 500 16 PRO A 24 4.43 -69.76 REMARK 500 16 ILE A 72 92.76 -58.63 REMARK 500 16 ASN A 74 177.27 -49.10 REMARK 500 16 SER A 90 105.59 -37.07 REMARK 500 16 LYS A 94 -31.43 -36.17 REMARK 500 16 ASP A 114 -37.86 -33.56 REMARK 500 16 LYS A 119 38.00 32.99 REMARK 500 16 SER A 121 -59.65 -130.72 REMARK 500 16 ARG A 122 142.40 -34.43 REMARK 500 16 PRO A 130 1.09 -69.78 REMARK 500 17 SER A 6 142.00 -39.30 REMARK 500 17 ILE A 20 -69.67 -95.66 REMARK 500 17 PRO A 24 6.50 -69.83 REMARK 500 17 PRO A 35 1.14 -69.78 REMARK 500 17 ILE A 72 97.98 -65.07 REMARK 500 17 ASN A 74 -174.10 -68.66 REMARK 500 17 ASP A 75 -45.57 -133.83 REMARK 500 17 SER A 90 106.65 -45.58 REMARK 500 17 ARG A 104 76.21 -101.16 REMARK 500 17 THR A 118 38.35 31.97 REMARK 500 17 LYS A 119 46.44 34.06 REMARK 500 17 SER A 128 147.04 -33.92 REMARK 500 17 PRO A 130 95.93 -69.72 REMARK 500 18 ILE A 20 -69.71 -93.67 REMARK 500 18 PRO A 24 1.10 -69.69 REMARK 500 18 LYS A 26 149.86 -173.83 REMARK 500 18 SER A 90 102.93 -53.01 REMARK 500 18 LYS A 94 -18.28 -49.83 REMARK 500 18 LYS A 119 36.60 -81.13 REMARK 500 18 ARG A 122 52.66 74.69 REMARK 500 18 PRO A 130 2.69 -69.78 REMARK 500 18 SER A 131 106.77 -35.80 REMARK 500 19 ILE A 20 -69.97 -96.20 REMARK 500 19 PRO A 24 4.02 -69.72 REMARK 500 19 PRO A 35 3.16 -69.69 REMARK 500 19 ASP A 59 54.89 35.28 REMARK 500 19 ILE A 72 98.92 -66.48 REMARK 500 19 ASN A 74 178.27 -48.51 REMARK 500 19 SER A 90 103.17 -55.67 REMARK 500 19 LYS A 94 -41.47 -29.90 REMARK 500 19 GLU A 100 52.26 -112.88 REMARK 500 19 ASN A 103 107.37 -171.38 REMARK 500 19 THR A 118 47.30 -76.13 REMARK 500 19 ARG A 122 47.63 -81.16 REMARK 500 20 ILE A 20 -70.84 -93.84 REMARK 500 20 PRO A 24 6.44 -69.72 REMARK 500 20 PRO A 35 1.39 -69.77 REMARK 500 20 PRO A 83 -177.93 -69.73 REMARK 500 20 SER A 90 108.28 -52.77 REMARK 500 20 LYS A 94 -35.64 -32.94 REMARK 500 20 GLU A 100 40.28 -105.65 REMARK 500 20 ALA A 117 -171.22 -59.39 REMARK 500 20 LYS A 124 129.85 -38.00 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008000334.3 RELATED DB: TARGETDB
DBREF 2DJ3 A 8 127 UNP P08003 PDIA4_MOUSE 464 495
SEQADV 2DJ3 GLY A 1 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 2 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 3 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 GLY A 4 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 5 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 6 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 GLY A 7 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 128 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 GLY A 129 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 PRO A 130 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 131 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 132 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 GLY A 133 UNP P08003 CLONING ARTIFACT
SEQRES 1 A 133 GLY SER SER GLY SER SER GLY PRO VAL LYS VAL VAL VAL SEQRES 2 A 133 GLY LYS THR PHE ASP ALA ILE VAL MET ASP PRO LYS LYS SEQRES 3 A 133 ASP VAL LEU ILE GLU PHE TYR ALA PRO TRP CYS GLY HIS SEQRES 4 A 133 CYS LYS GLN LEU GLU PRO ILE TYR THR SER LEU GLY LYS SEQRES 5 A 133 LYS TYR LYS GLY GLN LYS ASP LEU VAL ILE ALA LYS MET SEQRES 6 A 133 ASP ALA THR ALA ASN ASP ILE THR ASN ASP GLN TYR LYS SEQRES 7 A 133 VAL GLU GLY PHE PRO THR ILE TYR PHE ALA PRO SER GLY SEQRES 8 A 133 ASP LYS LYS ASN PRO ILE LYS PHE GLU GLY GLY ASN ARG SEQRES 9 A 133 ASP LEU GLU HIS LEU SER LYS PHE ILE ASP GLU HIS ALA SEQRES 10 A 133 THR LYS ARG SER ARG THR LYS GLU GLU LEU SER GLY PRO SEQRES 11 A 133 SER SER GLY
HELIX 1 1 GLY A 38 LYS A 55 1 18 HELIX 2 2 GLU A 107 ALA A 117 1 11
SHEET 1 A 5 LYS A 10 VAL A 11 0 SHEET 2 A 5 LEU A 60 MET A 65 1 O LYS A 64 N LYS A 10 SHEET 3 A 5 ASP A 27 PHE A 32 1 N GLU A 31 O MET A 65 SHEET 4 A 5 THR A 84 ALA A 88 -1 O THR A 84 N PHE A 32 SHEET 5 A 5 ILE A 97 LYS A 98 -1 O ILE A 97 N PHE A 87
CISPEP 1 PHE A 82 PRO A 83 1 -0.02 CISPEP 2 PHE A 82 PRO A 83 2 -0.03 CISPEP 3 PHE A 82 PRO A 83 3 -0.01 CISPEP 4 PHE A 82 PRO A 83 4 -0.03 CISPEP 5 PHE A 82 PRO A 83 5 -0.01 CISPEP 6 PHE A 82 PRO A 83 6 0.01 CISPEP 7 PHE A 82 PRO A 83 7 -0.03 CISPEP 8 PHE A 82 PRO A 83 8 -0.04 CISPEP 9 PHE A 82 PRO A 83 9 -0.03 CISPEP 10 PHE A 82 PRO A 83 10 0.03 CISPEP 11 PHE A 82 PRO A 83 11 -0.02 CISPEP 12 PHE A 82 PRO A 83 12 0.08 CISPEP 13 PHE A 82 PRO A 83 13 -0.02 CISPEP 14 PHE A 82 PRO A 83 14 0.00 CISPEP 15 PHE A 82 PRO A 83 15 0.01 CISPEP 16 PHE A 82 PRO A 83 16 0.07 CISPEP 17 PHE A 82 PRO A 83 17 0.02 CISPEP 18 PHE A 82 PRO A 83 18 -0.03 CISPEP 19 PHE A 82 PRO A 83 19 0.04 CISPEP 20 PHE A 82 PRO A 83 20 -0.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000