10 20 30 40 50 60 70 80 2DIT - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 30-MAR-06 2DIT
TITLE SOLUTION STRUCTURE OF THE RRM_1 DOMAIN OF HIV TAT SPECIFIC TITLE 2 FACTOR 1 VARIANT
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV TAT SPECIFIC FACTOR 1 VARIANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM_1 DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIV TAT SPECIFIC FACTOR 1 VARIANT; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050711-19; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS NMR, STRUCTURAL GENOMICS, RRM_1 DOMAIN, HIV TAT SPECIFIC KEYWDS 2 FACTOR 1 VARIANT, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DIT 1 VERSN REVDAT 1 30-SEP-06 2DIT 0
JRNL AUTH W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RRM_1 DOMAIN OF HIV TAT JRNL TITL 2 SPECIFIC FACTOR 1 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DIT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025462.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90%H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 26 5.38 -69.79 REMARK 500 1 LYS A 55 149.15 -170.02 REMARK 500 1 ASP A 60 43.02 -79.49 REMARK 500 1 ARG A 61 -33.28 -130.67 REMARK 500 1 PRO A 63 3.13 -69.80 REMARK 500 1 TYR A 105 -71.91 -58.16 REMARK 500 1 SER A 107 161.11 -48.90 REMARK 500 1 SER A 110 58.84 -95.24 REMARK 500 2 SER A 2 112.38 -165.16 REMARK 500 2 ARG A 13 78.68 -119.68 REMARK 500 2 PRO A 26 3.33 -69.78 REMARK 500 2 ASP A 60 35.75 -81.54 REMARK 500 2 PRO A 63 1.54 -69.76 REMARK 500 2 ASP A 100 -74.75 -123.00 REMARK 500 2 THR A 102 -37.49 -134.54 REMARK 500 2 TYR A 105 -70.05 -51.16 REMARK 500 2 SER A 107 159.81 -45.57 REMARK 500 3 SER A 2 -54.95 -125.09 REMARK 500 3 HIS A 14 44.76 -90.95 REMARK 500 3 GLU A 15 44.60 -87.30 REMARK 500 3 ARG A 16 58.11 -118.80 REMARK 500 3 PRO A 26 2.99 -69.78 REMARK 500 3 ASP A 60 36.31 -81.96 REMARK 500 3 PRO A 63 6.17 -69.76 REMARK 500 3 THR A 102 -34.35 -130.60 REMARK 500 4 GLU A 15 105.08 -36.34 REMARK 500 4 PRO A 63 4.08 -69.75 REMARK 500 4 SER A 107 146.52 -36.25 REMARK 500 5 SER A 6 172.60 -47.30 REMARK 500 5 SER A 10 173.38 -48.59 REMARK 500 5 ASP A 100 -65.35 -106.80 REMARK 500 6 ARG A 11 152.46 -49.35 REMARK 500 6 ARG A 13 71.02 -106.25 REMARK 500 6 ASP A 32 140.64 -172.23 REMARK 500 6 ASP A 100 -72.47 -110.13 REMARK 500 6 THR A 102 -31.51 -132.17 REMARK 500 7 ARG A 13 41.10 -85.46 REMARK 500 7 ARG A 16 68.88 -114.54 REMARK 500 7 ASP A 32 137.80 -174.18 REMARK 500 7 THR A 102 -40.89 -131.60 REMARK 500 7 SER A 107 151.12 -46.68 REMARK 500 8 PRO A 9 98.57 -69.80 REMARK 500 8 PRO A 26 1.59 -69.75 REMARK 500 8 ASP A 32 140.68 -170.70 REMARK 500 8 ASP A 60 39.25 -80.60 REMARK 500 8 PRO A 63 4.17 -69.75 REMARK 500 8 THR A 102 -33.59 -133.82 REMARK 500 8 SER A 111 103.99 -54.08 REMARK 500 9 SER A 3 168.51 -44.70 REMARK 500 9 PRO A 26 3.72 -69.79 REMARK 500 9 PRO A 63 4.49 -69.78 REMARK 500 9 ASP A 100 -64.32 -133.24 REMARK 500 9 THR A 102 -45.24 -132.03 REMARK 500 9 SER A 111 163.19 -45.93 REMARK 500 10 ARG A 11 165.81 -46.01 REMARK 500 10 MET A 12 80.60 -57.09 REMARK 500 10 PRO A 26 8.27 -69.79 REMARK 500 10 ASP A 60 37.44 -81.04 REMARK 500 10 PRO A 63 6.01 -69.82 REMARK 500 10 ARG A 87 163.37 -49.09 REMARK 500 10 ASP A 100 -70.49 -124.46 REMARK 500 10 THR A 102 -38.20 -134.64 REMARK 500 10 PRO A 109 92.38 -69.77 REMARK 500 11 PRO A 9 84.24 -69.74 REMARK 500 11 ARG A 13 45.30 -106.57 REMARK 500 11 ASP A 60 40.75 -78.45 REMARK 500 11 PRO A 63 5.14 -69.80 REMARK 500 11 ASP A 100 -71.24 -117.76 REMARK 500 11 THR A 102 -37.05 -132.91 REMARK 500 11 SER A 110 103.18 -37.13 REMARK 500 12 SER A 2 48.88 -85.56 REMARK 500 12 ARG A 11 45.07 37.48 REMARK 500 12 LYS A 55 142.02 -170.11 REMARK 500 12 THR A 102 -43.77 -132.53 REMARK 500 12 TYR A 105 -72.34 -63.89 REMARK 500 13 ARG A 13 60.18 -100.83 REMARK 500 13 ASP A 32 138.55 -170.91 REMARK 500 13 ASP A 100 -73.87 -118.90 REMARK 500 13 SER A 107 151.25 -44.91 REMARK 500 14 ARG A 11 82.00 -59.92 REMARK 500 14 MET A 12 103.32 -47.86 REMARK 500 14 ASP A 32 139.06 -174.28 REMARK 500 14 PRO A 63 3.66 -69.78 REMARK 500 14 SER A 107 146.51 -38.85 REMARK 500 15 SER A 10 144.64 -37.97 REMARK 500 15 HIS A 14 47.18 -78.72 REMARK 500 15 ARG A 16 98.08 -56.30 REMARK 500 15 PRO A 63 3.52 -69.81 REMARK 500 15 ASP A 100 -64.15 -104.06 REMARK 500 15 SER A 110 41.71 35.06 REMARK 500 16 SER A 3 108.46 -174.47 REMARK 500 16 MET A 12 175.52 -47.44 REMARK 500 16 PRO A 26 2.41 -69.76 REMARK 500 16 ASP A 60 30.07 -82.50 REMARK 500 16 PRO A 63 3.53 -69.79 REMARK 500 16 THR A 102 -44.47 -130.88 REMARK 500 16 TYR A 105 -74.28 -68.75 REMARK 500 17 PRO A 26 7.94 -69.79 REMARK 500 17 THR A 102 -40.80 -130.28 REMARK 500 18 SER A 5 -51.74 -127.29 REMARK 500 18 SER A 6 43.01 -89.98 REMARK 500 18 PRO A 9 93.90 -69.76 REMARK 500 18 PRO A 63 2.91 -69.78 REMARK 500 18 ASP A 100 -66.76 -103.88 REMARK 500 18 THR A 102 -35.71 -133.89 REMARK 500 19 ARG A 11 95.43 -47.39 REMARK 500 19 MET A 12 101.76 -54.43 REMARK 500 19 ARG A 16 50.82 -106.42 REMARK 500 19 PRO A 26 1.39 -69.73 REMARK 500 19 ASP A 32 140.70 -173.09 REMARK 500 19 LYS A 49 -38.04 -39.45 REMARK 500 19 PRO A 63 4.31 -69.80 REMARK 500 19 ASP A 78 -25.28 -39.36 REMARK 500 19 THR A 102 -38.63 -133.05 REMARK 500 20 SER A 3 -61.12 -109.04 REMARK 500 20 SER A 5 46.06 35.05 REMARK 500 20 ARG A 13 77.39 -103.35 REMARK 500 20 ARG A 16 52.85 -116.89 REMARK 500 20 PRO A 26 3.29 -69.78 REMARK 500 20 LYS A 49 -38.18 -39.91 REMARK 500 20 PRO A 63 2.33 -69.74 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001189.1 RELATED DB: TARGETDB
DBREF 2DIT A 8 106 GB 62088186 BAD92540 259 357
SEQADV 2DIT GLY A 1 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 2 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 3 GB 62088186 CLONING ARTIFACT SEQADV 2DIT GLY A 4 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 5 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 6 GB 62088186 CLONING ARTIFACT SEQADV 2DIT GLY A 7 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 107 GB 62088186 CLONING ARTIFACT SEQADV 2DIT GLY A 108 GB 62088186 CLONING ARTIFACT SEQADV 2DIT PRO A 109 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 110 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 111 GB 62088186 CLONING ARTIFACT SEQADV 2DIT GLY A 112 GB 62088186 CLONING ARTIFACT
SEQRES 1 A 112 GLY SER SER GLY SER SER GLY GLY PRO SER ARG MET ARG SEQRES 2 A 112 HIS GLU ARG VAL VAL ILE ILE LYS ASN MET PHE HIS PRO SEQRES 3 A 112 MET ASP PHE GLU ASP ASP PRO LEU VAL LEU ASN GLU ILE SEQRES 4 A 112 ARG GLU ASP LEU ARG VAL GLU CYS SER LYS PHE GLY GLN SEQRES 5 A 112 ILE ARG LYS LEU LEU LEU PHE ASP ARG HIS PRO ASP GLY SEQRES 6 A 112 VAL ALA SER VAL SER PHE ARG ASP PRO GLU GLU ALA ASP SEQRES 7 A 112 TYR CYS ILE GLN THR LEU ASP GLY ARG TRP PHE GLY GLY SEQRES 8 A 112 ARG GLN ILE THR ALA GLN ALA TRP ASP GLY THR THR ASP SEQRES 9 A 112 TYR GLN SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 28 ASP A 31 1 4 HELIX 2 2 LEU A 34 LYS A 49 1 16 HELIX 3 3 SER A 70 THR A 83 1 14
SHEET 1 A 4 LYS A 55 LEU A 58 0 SHEET 2 A 4 VAL A 66 SER A 70 -1 SHEET 3 A 4 VAL A 17 LYS A 21 -1 SHEET 4 A 4 THR A 95 ALA A 98 -1 SHEET 1 B 2 TRP A 88 PHE A 89 0 SHEET 2 B 2 ARG A 92 GLN A 93 -1
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000