10 20 30 40 50 60 70 80 2DHK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 24-MAR-06 2DHK
TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF TBC1 DOMAIN FAMILY TITLE 2 MEMBER 2 PROTEIN FROM HUMAN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TBC1 DOMAIN FAMILY MEMBER 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: PROSTATE ANTIGEN RECOGNIZED AND INDENTIFIED BY COMPND 6 SEREX, PARIS-1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TBC1D2, PARIS1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051205-24; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PH DOMAIN, PARIS-1, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 IMMUNE SYSTEM
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,N.TOCHIO,S.KOSHIBA,T.HARADA,S.WATANABE,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DHK 1 VERSN REVDAT 1 24-SEP-06 2DHK 0
JRNL AUTH H.LI,N.TOCHIO,S.KOSHIBA,T.HARADA,S.WATANABE, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF TBC1 DOMAIN JRNL TITL 2 FAMILY MEMBER 2 PROTEIN FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DHK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025423.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.31MM PH DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 8 43.09 -91.73 REMARK 500 1 LYS A 9 171.88 -50.64 REMARK 500 1 ALA A 49 -39.84 -34.10 REMARK 500 1 ASP A 67 36.73 -93.26 REMARK 500 1 PRO A 78 3.04 -69.77 REMARK 500 1 SER A 109 144.19 -36.48 REMARK 500 1 PRO A 111 -174.97 -69.83 REMARK 500 1 ALA A 112 143.92 -36.05 REMARK 500 1 PRO A 113 -173.75 -69.76 REMARK 500 2 LYS A 8 46.82 -86.81 REMARK 500 2 ALA A 49 -38.80 -34.30 REMARK 500 2 ASP A 67 34.30 -88.51 REMARK 500 2 PRO A 78 3.19 -69.81 REMARK 500 2 SER A 109 130.95 -34.55 REMARK 500 2 PRO A 111 -177.10 -69.72 REMARK 500 2 SER A 114 47.45 -103.21 REMARK 500 2 PRO A 116 -178.26 -69.76 REMARK 500 2 SER A 118 107.47 -44.35 REMARK 500 3 LYS A 9 130.35 -39.77 REMARK 500 3 ILE A 23 166.39 -47.71 REMARK 500 3 ASP A 67 33.79 -90.23 REMARK 500 3 GLU A 69 -30.93 -36.38 REMARK 500 3 PRO A 78 3.25 -69.71 REMARK 500 3 ALA A 87 -71.02 -65.48 REMARK 500 3 LEU A 99 -39.12 -33.35 REMARK 500 3 PRO A 111 -177.82 -69.75 REMARK 500 3 PRO A 113 90.79 -69.71 REMARK 500 3 PRO A 116 96.47 -69.75 REMARK 500 4 LYS A 8 40.57 -98.15 REMARK 500 4 ASP A 67 35.11 -91.64 REMARK 500 4 PRO A 78 3.33 -69.82 REMARK 500 4 ALA A 112 163.44 -42.87 REMARK 500 4 PRO A 113 -172.31 -69.81 REMARK 500 4 SER A 114 44.97 35.66 REMARK 500 4 PRO A 116 95.67 -69.85 REMARK 500 5 LYS A 8 44.40 -82.58 REMARK 500 5 ASP A 67 37.58 -84.91 REMARK 500 5 PRO A 78 4.72 -69.77 REMARK 500 5 SER A 109 103.39 -35.59 REMARK 500 5 PRO A 111 -175.19 -69.74 REMARK 500 5 PRO A 113 -171.03 -69.76 REMARK 500 6 SER A 2 112.38 -39.20 REMARK 500 6 SER A 5 90.67 -59.97 REMARK 500 6 ASP A 67 31.28 -96.87 REMARK 500 6 PRO A 78 4.71 -69.73 REMARK 500 6 LEU A 99 -38.95 -33.17 REMARK 500 6 SER A 109 99.61 -37.77 REMARK 500 6 ALA A 112 143.29 -37.99 REMARK 500 6 PRO A 113 -170.19 -69.80 REMARK 500 7 SER A 5 44.51 39.10 REMARK 500 7 ASP A 67 35.94 -98.70 REMARK 500 7 PRO A 78 3.84 -69.74 REMARK 500 7 SER A 109 146.11 -38.09 REMARK 500 7 PRO A 111 -174.19 -69.79 REMARK 500 7 PRO A 113 87.95 -69.82 REMARK 500 8 PRO A 78 5.12 -69.79 REMARK 500 9 LYS A 8 38.69 -98.38 REMARK 500 9 ALA A 49 -30.73 -37.65 REMARK 500 9 ASP A 67 33.89 -85.40 REMARK 500 9 PRO A 78 3.17 -69.73 REMARK 500 9 SER A 117 102.80 -39.69 REMARK 500 10 LYS A 9 160.85 -40.41 REMARK 500 10 LYS A 20 42.83 -87.83 REMARK 500 10 PRO A 78 3.27 -69.75 REMARK 500 10 SER A 109 96.80 -33.88 REMARK 500 10 ALA A 112 144.57 -37.33 REMARK 500 10 SER A 114 108.08 -167.76 REMARK 500 11 SER A 6 148.03 -172.63 REMARK 500 11 LYS A 9 158.80 -49.19 REMARK 500 11 LYS A 20 176.74 -54.16 REMARK 500 11 ALA A 49 -39.56 -33.34 REMARK 500 11 ASP A 67 36.68 -83.87 REMARK 500 11 PRO A 78 1.75 -69.81 REMARK 500 11 LEU A 99 -39.22 -33.11 REMARK 500 11 TRP A 104 -39.87 -39.28 REMARK 500 11 SER A 109 122.50 -34.51 REMARK 500 11 PRO A 111 -178.29 -69.76 REMARK 500 11 ALA A 112 148.10 -34.08 REMARK 500 11 PRO A 116 2.82 -69.77 REMARK 500 11 SER A 117 139.51 -34.54 REMARK 500 12 SER A 2 158.28 -49.37 REMARK 500 12 ALA A 49 -37.73 -37.29 REMARK 500 12 ASP A 67 34.73 -83.89 REMARK 500 12 GLU A 69 -34.91 -37.75 REMARK 500 12 PRO A 78 1.61 -69.80 REMARK 500 12 ALA A 87 -73.24 -52.84 REMARK 500 12 LEU A 99 -39.84 -33.38 REMARK 500 12 SER A 109 96.40 -33.27 REMARK 500 12 PRO A 113 2.66 -69.71 REMARK 500 12 SER A 114 106.22 -34.87 REMARK 500 13 SER A 5 125.32 -173.34 REMARK 500 13 LYS A 65 174.51 -47.54 REMARK 500 13 ASP A 67 35.87 -85.17 REMARK 500 13 PRO A 78 7.26 -69.78 REMARK 500 13 ALA A 87 -71.82 -40.82 REMARK 500 13 LEU A 99 -39.99 -33.23 REMARK 500 13 SER A 109 160.62 -40.32 REMARK 500 14 SER A 5 42.00 39.07 REMARK 500 14 LYS A 8 108.96 -165.09 REMARK 500 14 TRP A 26 160.93 -48.39 REMARK 500 14 LYS A 65 179.45 -57.23 REMARK 500 14 ASP A 67 36.15 -96.66 REMARK 500 14 PRO A 78 5.04 -69.73 REMARK 500 14 ALA A 87 -73.58 -50.70 REMARK 500 14 SER A 109 96.37 -33.63 REMARK 500 14 PRO A 111 -175.07 -69.80 REMARK 500 14 SER A 118 140.58 -34.58 REMARK 500 15 LYS A 20 96.47 -38.29 REMARK 500 15 ARG A 24 111.60 -30.92 REMARK 500 15 CYS A 38 44.62 70.92 REMARK 500 15 LYS A 65 157.05 -37.70 REMARK 500 15 ASP A 67 36.53 -94.38 REMARK 500 15 GLU A 69 -29.66 -39.22 REMARK 500 15 PRO A 78 3.06 -69.75 REMARK 500 15 SER A 109 122.60 -38.56 REMARK 500 15 PRO A 113 85.04 -69.80 REMARK 500 16 SER A 6 39.53 -85.66 REMARK 500 16 LYS A 65 -178.01 -69.51 REMARK 500 16 ASP A 67 39.57 -92.07 REMARK 500 16 PRO A 78 3.93 -69.70 REMARK 500 17 SER A 3 -58.48 -128.64 REMARK 500 17 LYS A 9 156.89 -38.92 REMARK 500 17 ALA A 49 -38.14 -36.35 REMARK 500 17 ASP A 67 37.65 -85.73 REMARK 500 17 PRO A 78 3.13 -69.74 REMARK 500 17 ALA A 87 -71.98 -51.48 REMARK 500 17 LEU A 99 -38.51 -33.34 REMARK 500 17 SER A 109 152.52 -38.06 REMARK 500 17 PRO A 111 -173.68 -69.71 REMARK 500 18 LYS A 20 95.34 -62.32 REMARK 500 18 ASP A 67 35.62 -83.45 REMARK 500 18 PRO A 78 6.26 -69.79 REMARK 500 18 ALA A 112 137.15 -34.52 REMARK 500 18 PRO A 113 -178.38 -69.69 REMARK 500 19 LYS A 8 44.49 -87.15 REMARK 500 19 ASP A 67 30.00 -90.83 REMARK 500 19 PRO A 78 4.35 -69.74 REMARK 500 19 PRO A 113 97.53 -69.68 REMARK 500 20 ASP A 48 75.00 -66.73 REMARK 500 20 ASP A 67 35.54 -84.05 REMARK 500 20 GLU A 69 -34.52 -39.19 REMARK 500 20 ALA A 87 -71.99 -53.04 REMARK 500 20 SER A 118 118.39 -164.70 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003002043.1 RELATED DB: TARGETDB
DBREF 2DHK A 8 113 UNP Q9BYX2 TBCD2_HUMAN 46 151
SEQADV 2DHK GLY A 1 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK SER A 2 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK SER A 3 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK GLY A 4 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK SER A 5 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK SER A 6 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK GLY A 7 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK SER A 114 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK GLY A 115 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK PRO A 116 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK SER A 117 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK SER A 118 UNP Q9BYX2 CLONING ARTIFACT SEQADV 2DHK GLY A 119 UNP Q9BYX2 CLONING ARTIFACT
SEQRES 1 A 119 GLY SER SER GLY SER SER GLY LYS LYS LEU CYS GLY TYR SEQRES 2 A 119 LEU SER LYS PHE GLY GLY LYS GLY PRO ILE ARG GLY TRP SEQRES 3 A 119 LYS SER ARG TRP PHE PHE TYR ASP GLU ARG LYS CYS GLN SEQRES 4 A 119 LEU TYR TYR SER ARG THR ALA GLN ASP ALA ASN PRO LEU SEQRES 5 A 119 ASP SER ILE ASP LEU SER SER ALA VAL PHE ASP CYS LYS SEQRES 6 A 119 ALA ASP ALA GLU GLU GLY ILE PHE GLU ILE LYS THR PRO SEQRES 7 A 119 SER ARG VAL ILE THR LEU LYS ALA ALA THR LYS GLN ALA SEQRES 8 A 119 MET LEU TYR TRP LEU GLN GLN LEU GLN MET LYS ARG TRP SEQRES 9 A 119 GLU PHE HIS ASN SER PRO PRO ALA PRO SER GLY PRO SER SEQRES 10 A 119 SER GLY
HELIX 1 1 LYS A 89 SER A 109 1 21
SHEET 1 A 7 ASP A 53 ASP A 56 0 SHEET 2 A 7 GLN A 39 SER A 43 -1 N TYR A 42 O ASP A 53 SHEET 3 A 7 LYS A 27 ASP A 34 -1 N PHE A 32 O TYR A 41 SHEET 4 A 7 CYS A 11 LYS A 16 -1 N LEU A 14 O ARG A 29 SHEET 5 A 7 ILE A 82 LYS A 85 -1 O LYS A 85 N SER A 15 SHEET 6 A 7 ILE A 72 LYS A 76 -1 N ILE A 75 O ILE A 82 SHEET 7 A 7 VAL A 61 CYS A 64 -1 N VAL A 61 O LYS A 76
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000