10 20 30 40 50 60 70 80 2DHG - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 23-MAR-06 2DHG
TITLE SOLUTION STRUCTURE OF THE C-TERMINAL RNA RECOGNITION MOTIF TITLE 2 IN TRNA SELENOCYSTEINE ASSOCIATED PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA SELENOCYSTEINE ASSOCIATED PROTEIN (SECP43); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRSPAP1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050829-18; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.IMAI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DHG 1 VERSN REVDAT 1 23-SEP-06 2DHG 0
JRNL AUTH T.IMAI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL RNA JRNL TITL 2 RECOGNITION MOTIF IN TRNA SELENOCYSTEINE JRNL TITL 3 ASSOCIATED PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DHG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025419.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0), REMARK 210 100MM NACL, 1MM D-DTT, 0.02% REMARK 210 NAN3, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 88 42.00 -89.19 REMARK 500 1 PRO A 94 -173.27 -69.73 REMARK 500 1 PRO A 105 2.99 -69.82 REMARK 500 1 PHE A 116 -68.16 -95.25 REMARK 500 1 VAL A 117 -30.10 -36.70 REMARK 500 1 PRO A 121 0.53 -69.82 REMARK 500 1 GLN A 158 137.90 -35.60 REMARK 500 1 SER A 165 -32.87 -37.40 REMARK 500 1 PRO A 167 -179.19 -69.82 REMARK 500 1 PRO A 175 -173.91 -69.76 REMARK 500 1 LYS A 176 94.61 -54.81 REMARK 500 1 ALA A 177 76.29 -107.33 REMARK 500 2 PRO A 105 2.14 -69.72 REMARK 500 2 LEU A 112 -32.88 -35.75 REMARK 500 2 PHE A 116 -64.92 -95.27 REMARK 500 2 VAL A 117 -30.92 -36.78 REMARK 500 2 PRO A 121 1.94 -69.74 REMARK 500 2 SER A 136 106.76 -40.21 REMARK 500 2 GLN A 158 140.33 -39.00 REMARK 500 2 SER A 165 40.35 -82.09 REMARK 500 2 PRO A 187 96.61 -69.74 REMARK 500 3 SER A 88 175.97 -51.06 REMARK 500 3 THR A 104 151.26 -47.52 REMARK 500 3 PHE A 116 -65.78 -95.25 REMARK 500 3 VAL A 117 -28.42 -37.16 REMARK 500 3 PRO A 121 2.94 -69.72 REMARK 500 3 SER A 136 106.83 -34.57 REMARK 500 3 GLN A 158 139.86 -34.99 REMARK 500 3 ALA A 177 -72.54 -61.21 REMARK 500 4 GLU A 95 174.94 -50.98 REMARK 500 4 THR A 104 150.10 -48.31 REMARK 500 4 PHE A 116 -67.09 -95.30 REMARK 500 4 VAL A 117 -29.41 -36.51 REMARK 500 4 PRO A 121 2.39 -69.75 REMARK 500 4 GLN A 132 -19.99 -48.56 REMARK 500 4 SER A 136 105.78 -43.23 REMARK 500 4 PRO A 182 85.56 -69.78 REMARK 500 5 SER A 91 141.34 -170.37 REMARK 500 5 PRO A 105 2.21 -69.76 REMARK 500 5 PHE A 116 -66.98 -95.28 REMARK 500 5 VAL A 117 -30.97 -36.73 REMARK 500 5 SER A 122 32.28 -99.25 REMARK 500 5 SER A 136 107.20 -44.18 REMARK 500 5 ARG A 152 -33.29 -39.41 REMARK 500 6 SER A 91 129.23 -38.76 REMARK 500 6 PHE A 116 -62.74 -95.25 REMARK 500 6 VAL A 117 -26.39 -38.44 REMARK 500 6 PRO A 121 2.81 -69.73 REMARK 500 6 LYS A 176 71.29 -109.36 REMARK 500 6 SER A 178 56.64 -98.40 REMARK 500 6 VAL A 183 87.68 -69.38 REMARK 500 7 THR A 104 151.57 -48.79 REMARK 500 7 PRO A 105 1.56 -69.75 REMARK 500 7 PHE A 116 -66.12 -94.41 REMARK 500 7 VAL A 117 -30.43 -36.71 REMARK 500 7 PRO A 121 1.39 -69.74 REMARK 500 7 SER A 136 116.83 -39.45 REMARK 500 7 PRO A 167 -176.85 -69.85 REMARK 500 7 PRO A 175 -166.56 -69.74 REMARK 500 7 LYS A 181 143.87 -173.13 REMARK 500 7 SER A 189 44.82 35.41 REMARK 500 8 SER A 92 162.23 -49.87 REMARK 500 8 PRO A 105 3.16 -69.79 REMARK 500 8 PHE A 116 -67.53 -95.14 REMARK 500 8 VAL A 117 -27.58 -37.65 REMARK 500 8 PRO A 121 2.44 -69.76 REMARK 500 8 SER A 136 100.34 -49.76 REMARK 500 8 PRO A 175 1.40 -69.80 REMARK 500 9 SER A 92 136.61 -172.37 REMARK 500 9 THR A 104 150.16 -47.94 REMARK 500 9 PRO A 105 2.98 -69.74 REMARK 500 9 PHE A 116 -67.52 -95.25 REMARK 500 9 VAL A 117 -29.35 -36.83 REMARK 500 9 ARG A 152 -33.55 -38.18 REMARK 500 9 PRO A 175 79.93 -69.79 REMARK 500 9 LYS A 176 37.05 33.56 REMARK 500 10 THR A 104 150.19 -48.40 REMARK 500 10 PHE A 116 -62.13 -95.03 REMARK 500 10 VAL A 117 -27.16 -39.03 REMARK 500 10 SER A 136 109.75 -39.37 REMARK 500 10 GLN A 158 145.22 -37.93 REMARK 500 11 PRO A 94 81.82 -69.80 REMARK 500 11 THR A 104 150.53 -49.37 REMARK 500 11 PRO A 105 3.00 -69.74 REMARK 500 11 PRO A 121 0.05 -69.74 REMARK 500 11 GLN A 158 129.62 -35.60 REMARK 500 11 PRO A 175 -176.65 -69.75 REMARK 500 11 LYS A 176 89.52 -46.93 REMARK 500 11 ALA A 177 76.42 -104.36 REMARK 500 11 PRO A 182 95.99 -69.83 REMARK 500 11 GLU A 184 133.70 -174.83 REMARK 500 12 PRO A 105 2.61 -69.69 REMARK 500 12 PHE A 116 -67.23 -95.00 REMARK 500 12 VAL A 117 -30.31 -36.81 REMARK 500 12 PRO A 121 2.43 -69.75 REMARK 500 12 SER A 136 114.16 -37.89 REMARK 500 12 SER A 165 -33.58 -37.58 REMARK 500 12 PRO A 167 -176.27 -69.79 REMARK 500 13 SER A 89 -60.39 -91.25 REMARK 500 13 GLU A 95 117.78 -168.54 REMARK 500 13 PRO A 105 3.13 -69.72 REMARK 500 13 SER A 136 107.26 -54.55 REMARK 500 13 GLN A 158 134.38 -36.14 REMARK 500 13 LYS A 181 77.99 -116.75 REMARK 500 13 PRO A 182 80.23 -69.76 REMARK 500 14 THR A 104 151.37 -48.74 REMARK 500 14 PRO A 105 2.95 -69.80 REMARK 500 14 GLN A 132 -39.84 -39.86 REMARK 500 14 SER A 136 108.27 -35.01 REMARK 500 14 GLN A 158 132.05 -36.34 REMARK 500 14 ARG A 179 82.99 -67.05 REMARK 500 15 PRO A 94 82.00 -69.74 REMARK 500 15 THR A 104 151.54 -45.99 REMARK 500 15 PRO A 105 0.00 -69.82 REMARK 500 15 PHE A 116 -66.61 -95.02 REMARK 500 15 VAL A 117 -30.00 -36.59 REMARK 500 15 PRO A 121 2.90 -69.82 REMARK 500 15 SER A 136 103.64 -37.65 REMARK 500 15 LYS A 176 78.38 -110.02 REMARK 500 15 ALA A 177 -55.31 -134.85 REMARK 500 15 SER A 178 116.32 -170.72 REMARK 500 15 LYS A 181 131.15 -170.60 REMARK 500 15 SER A 188 46.34 34.36 REMARK 500 16 PRO A 94 98.01 -69.74 REMARK 500 16 THR A 104 150.20 -47.01 REMARK 500 16 PRO A 105 3.12 -69.77 REMARK 500 16 PHE A 116 -66.70 -93.99 REMARK 500 16 VAL A 117 -31.09 -36.88 REMARK 500 16 PRO A 121 1.09 -69.77 REMARK 500 16 GLN A 158 128.96 -37.71 REMARK 500 16 PRO A 167 -175.42 -69.75 REMARK 500 16 PRO A 175 4.32 -69.69 REMARK 500 16 ALA A 177 38.83 37.75 REMARK 500 16 SER A 178 143.68 -171.40 REMARK 500 17 SER A 91 135.50 -34.98 REMARK 500 17 PRO A 94 84.07 -69.82 REMARK 500 17 THR A 104 150.16 -49.08 REMARK 500 17 PRO A 105 2.95 -69.78 REMARK 500 17 PHE A 116 -67.97 -95.17 REMARK 500 17 VAL A 117 -29.37 -36.70 REMARK 500 17 SER A 136 105.68 -43.20 REMARK 500 17 PRO A 167 -173.07 -69.80 REMARK 500 17 LYS A 176 108.85 -41.91 REMARK 500 18 SER A 92 55.64 -118.09 REMARK 500 18 THR A 104 150.00 -46.71 REMARK 500 18 PRO A 105 2.75 -69.75 REMARK 500 18 PHE A 116 -66.23 -94.99 REMARK 500 18 VAL A 117 -31.45 -36.74 REMARK 500 18 SER A 136 105.06 -56.79 REMARK 500 18 GLN A 158 131.35 -37.68 REMARK 500 18 PRO A 167 -178.99 -69.75 REMARK 500 18 PRO A 175 -179.92 -69.83 REMARK 500 18 LYS A 176 114.62 -37.37 REMARK 500 18 SER A 185 113.62 -160.96 REMARK 500 19 PRO A 94 91.62 -69.69 REMARK 500 19 THR A 104 150.11 -48.49 REMARK 500 19 PRO A 105 2.96 -69.71 REMARK 500 19 PHE A 116 -67.54 -95.19 REMARK 500 19 VAL A 117 -29.17 -36.69 REMARK 500 19 PRO A 121 2.96 -69.81 REMARK 500 19 SER A 136 108.63 -47.06 REMARK 500 19 ARG A 152 -35.12 -38.69 REMARK 500 19 PRO A 175 4.63 -69.78 REMARK 500 19 PRO A 187 -179.25 -69.74 REMARK 500 20 PRO A 105 2.42 -69.75 REMARK 500 20 PHE A 116 -64.36 -95.19 REMARK 500 20 VAL A 117 -30.91 -36.70 REMARK 500 20 PRO A 121 2.13 -69.74 REMARK 500 20 SER A 136 108.86 -43.79 REMARK 500 20 PRO A 167 -177.26 -69.77 REMARK 500 20 SER A 178 133.01 -171.51 REMARK 500 20 PRO A 187 -178.22 -69.73 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001121.1 RELATED DB: TARGETDB
DBREF 2DHG A 94 184 UNP Q9NX07 Q9NX07_HUMAN 94 184
SEQADV 2DHG GLY A 87 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 88 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 89 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG GLY A 90 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 91 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 92 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG GLY A 93 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 185 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG GLY A 186 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG PRO A 187 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 188 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 189 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG GLY A 190 UNP Q9NX07 CLONING ARTIFACT
SEQRES 1 A 104 GLY SER SER GLY SER SER GLY PRO GLU TYR SER LEU PHE SEQRES 2 A 104 VAL GLY ASP LEU THR PRO ASP VAL ASP ASP GLY MET LEU SEQRES 3 A 104 TYR GLU PHE PHE VAL LYS VAL TYR PRO SER CYS ARG GLY SEQRES 4 A 104 GLY LYS VAL VAL LEU ASP GLN THR GLY VAL SER LYS GLY SEQRES 5 A 104 TYR GLY PHE VAL LYS PHE THR ASP GLU LEU GLU GLN LYS SEQRES 6 A 104 ARG ALA LEU THR GLU CYS GLN GLY ALA VAL GLY LEU GLY SEQRES 7 A 104 SER LYS PRO VAL ARG LEU SER VAL ALA ILE PRO LYS ALA SEQRES 8 A 104 SER ARG VAL LYS PRO VAL GLU SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 108 TYR A 120 1 13 HELIX 2 2 ASP A 146 CYS A 157 1 12
SHEET 1 A 3 LEU A 98 GLY A 101 0 SHEET 2 A 3 SER A 136 PHE A 144 -1 O GLY A 140 N VAL A 100 SHEET 3 A 3 CYS A 123 LEU A 130 -1 N LYS A 127 O PHE A 141
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000