10 20 30 40 50 60 70 80 2DH9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 23-MAR-06 2DH9
TITLE SOLUTION STRUCTURE OF THE C-TERMINAL RNA BINDING DOMAIN IN TITLE 2 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: HNRNP M; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HNRPM; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050711-05; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.OCHI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DH9 1 VERSN REVDAT 1 23-SEP-06 2DH9 0
JRNL AUTH T.OCHI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL RNA BINDING JRNL TITL 2 DOMAIN IN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DH9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025417.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0), REMARK 210 100MM NACL, 1MM D-DTT, 0.02% REMARK 210 NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 544 39.34 73.89 REMARK 500 1 PHE A 549 107.58 -39.42 REMARK 500 1 ALA A 567 109.72 -167.33 REMARK 500 1 ASN A 614 49.50 36.42 REMARK 500 2 SER A 535 43.37 -99.99 REMARK 500 2 ASN A 544 36.92 73.86 REMARK 500 2 ASP A 548 -38.23 -35.22 REMARK 500 2 LEU A 554 -36.01 -36.54 REMARK 500 2 LYS A 555 -72.12 -80.54 REMARK 500 2 ALA A 567 113.90 -162.04 REMARK 500 2 LYS A 570 95.97 -48.14 REMARK 500 2 GLU A 572 148.83 -172.54 REMARK 500 2 LYS A 577 34.48 -99.01 REMARK 500 2 ASN A 598 125.07 -36.79 REMARK 500 2 PRO A 618 98.06 -69.77 REMARK 500 3 SER A 534 152.47 -35.87 REMARK 500 3 SER A 538 77.26 -104.27 REMARK 500 3 ASN A 544 36.43 74.80 REMARK 500 3 LYS A 570 107.88 -56.49 REMARK 500 3 GLU A 572 119.11 -174.15 REMARK 500 3 ASP A 612 39.50 -87.23 REMARK 500 3 ALA A 615 99.81 -44.19 REMARK 500 3 SER A 620 144.61 -174.79 REMARK 500 4 PHE A 549 108.25 -44.38 REMARK 500 4 LYS A 570 105.45 -56.72 REMARK 500 4 GLU A 572 129.16 -173.72 REMARK 500 5 SER A 535 86.31 -67.86 REMARK 500 5 ASP A 548 -39.28 -34.47 REMARK 500 5 LEU A 554 -39.78 -38.71 REMARK 500 5 ASN A 598 97.06 -35.84 REMARK 500 6 SER A 534 147.18 -39.37 REMARK 500 6 ASP A 548 -33.60 -34.09 REMARK 500 6 LYS A 570 106.02 -54.52 REMARK 500 6 GLU A 572 115.66 -161.99 REMARK 500 6 ASN A 598 106.26 -34.17 REMARK 500 6 ASP A 612 48.95 -94.67 REMARK 500 6 ASN A 614 87.71 -67.27 REMARK 500 6 PRO A 618 87.29 -69.71 REMARK 500 6 SER A 619 103.84 -55.15 REMARK 500 7 SER A 535 104.14 -56.19 REMARK 500 7 ASN A 544 38.87 71.55 REMARK 500 7 ASP A 548 -32.30 -35.54 REMARK 500 7 ALA A 567 118.89 -161.17 REMARK 500 7 LYS A 570 105.25 -49.35 REMARK 500 7 SER A 576 97.49 -69.26 REMARK 500 7 LYS A 577 39.58 -85.77 REMARK 500 7 ASN A 598 96.10 -33.91 REMARK 500 7 ASP A 612 45.39 -84.53 REMARK 500 7 PRO A 618 -177.00 -69.74 REMARK 500 8 PHE A 549 103.88 -45.98 REMARK 500 8 ALA A 567 113.84 -166.83 REMARK 500 8 ASN A 598 97.56 -34.12 REMARK 500 8 ASP A 612 72.63 -103.90 REMARK 500 9 SER A 537 107.51 -161.61 REMARK 500 9 ASP A 548 -26.53 -38.96 REMARK 500 9 LYS A 577 30.53 -96.08 REMARK 500 9 ASN A 598 100.32 -34.35 REMARK 500 10 SER A 537 77.10 -69.40 REMARK 500 10 ASN A 544 42.43 70.77 REMARK 500 10 PHE A 549 102.59 -35.31 REMARK 500 10 LYS A 555 -72.71 -70.52 REMARK 500 10 LYS A 570 103.24 -39.93 REMARK 500 10 GLU A 572 118.66 -167.18 REMARK 500 10 ASN A 598 126.43 -34.68 REMARK 500 10 ASP A 612 63.18 -102.84 REMARK 500 10 ASN A 614 155.28 -38.70 REMARK 500 10 ALA A 615 89.37 -66.14 REMARK 500 11 ASN A 544 54.96 70.36 REMARK 500 11 LYS A 557 -34.68 -38.34 REMARK 500 11 ALA A 567 106.87 -165.52 REMARK 500 11 LYS A 570 108.42 -39.32 REMARK 500 11 LYS A 577 33.80 -89.57 REMARK 500 12 ASN A 544 38.94 72.44 REMARK 500 12 ASP A 548 -31.13 -35.69 REMARK 500 12 LYS A 555 -70.46 -66.29 REMARK 500 12 LYS A 570 135.86 -38.77 REMARK 500 12 MET A 597 -70.32 -69.24 REMARK 500 12 ASN A 598 101.32 -34.14 REMARK 500 12 SER A 619 42.40 37.33 REMARK 500 13 SER A 534 42.94 -93.09 REMARK 500 13 SER A 538 89.55 -62.13 REMARK 500 13 ASN A 544 34.21 74.07 REMARK 500 13 PHE A 549 106.87 -38.59 REMARK 500 13 LYS A 555 -71.39 -70.96 REMARK 500 13 ALA A 567 116.94 -160.58 REMARK 500 13 LYS A 570 93.69 -51.05 REMARK 500 13 ASN A 598 117.89 -37.52 REMARK 500 13 ARG A 613 106.06 -44.13 REMARK 500 14 ASN A 544 42.64 74.93 REMARK 500 14 GLU A 572 139.57 -173.00 REMARK 500 14 LYS A 577 30.38 -93.73 REMARK 500 14 ASN A 598 98.24 -34.41 REMARK 500 14 ASP A 612 78.51 -103.24 REMARK 500 14 SER A 619 103.39 -40.13 REMARK 500 15 SER A 537 90.01 -62.83 REMARK 500 15 ASP A 548 -36.13 -34.12 REMARK 500 15 LYS A 570 104.90 -53.52 REMARK 500 15 LYS A 577 30.71 -92.66 REMARK 500 15 ASN A 598 121.61 -39.70 REMARK 500 15 ASP A 612 58.13 -99.45 REMARK 500 16 SER A 534 41.34 -82.34 REMARK 500 16 SER A 535 40.29 34.54 REMARK 500 16 LEU A 554 -34.07 -37.16 REMARK 500 16 ASN A 598 100.69 -34.09 REMARK 500 16 ARG A 613 117.86 -38.65 REMARK 500 16 PRO A 618 90.21 -69.77 REMARK 500 17 ASN A 544 41.68 71.90 REMARK 500 17 PHE A 549 109.74 -46.24 REMARK 500 17 LEU A 554 -36.52 -37.31 REMARK 500 17 LYS A 557 -35.39 -36.49 REMARK 500 17 LYS A 570 96.74 -67.01 REMARK 500 18 SER A 537 173.02 -52.61 REMARK 500 18 ASN A 544 33.59 73.56 REMARK 500 18 ASP A 548 -27.48 -38.22 REMARK 500 18 LYS A 555 -74.09 -68.45 REMARK 500 18 ASN A 598 104.97 -37.95 REMARK 500 18 SER A 603 31.89 71.55 REMARK 500 18 PRO A 618 93.64 -69.71 REMARK 500 19 LYS A 555 -70.18 -70.56 REMARK 500 19 ALA A 567 116.72 -160.40 REMARK 500 19 ASN A 598 96.54 -35.33 REMARK 500 20 LEU A 554 -37.62 -37.16 REMARK 500 20 GLU A 572 119.35 -174.92 REMARK 500 20 ASP A 612 52.15 -93.79 REMARK 500 20 SER A 619 104.80 -42.70 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003002075.2 RELATED DB: TARGETDB
DBREF 2DH9 A 540 615 UNP P52272 HNRPM_HUMAN 654 729
SEQADV 2DH9 GLY A 533 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 534 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 535 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 GLY A 536 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 537 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 538 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 GLY A 539 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 616 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 GLY A 617 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 PRO A 618 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 619 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 620 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 GLY A 621 UNP P52272 CLONING ARTIFACT
SEQRES 1 A 89 GLY SER SER GLY SER SER GLY ILE PHE VAL ARG ASN LEU SEQRES 2 A 89 PRO PHE ASP PHE THR TRP LYS MET LEU LYS ASP LYS PHE SEQRES 3 A 89 ASN GLU CYS GLY HIS VAL LEU TYR ALA ASP ILE LYS MET SEQRES 4 A 89 GLU ASN GLY LYS SER LYS GLY CYS GLY VAL VAL LYS PHE SEQRES 5 A 89 GLU SER PRO GLU VAL ALA GLU ARG ALA CYS ARG MET MET SEQRES 6 A 89 ASN GLY MET LYS LEU SER GLY ARG GLU ILE ASP VAL ARG SEQRES 7 A 89 ILE ASP ARG ASN ALA SER GLY PRO SER SER GLY
HELIX 1 1 THR A 550 GLU A 560 1 11 HELIX 2 2 SER A 586 MET A 597 1 12
SHEET 1 A 4 VAL A 564 ASP A 568 0 SHEET 2 A 4 CYS A 579 PHE A 584 -1 O LYS A 583 N LEU A 565 SHEET 3 A 4 GLY A 539 ARG A 543 -1 N ILE A 540 O VAL A 582 SHEET 4 A 4 ARG A 610 ASP A 612 -1 O ARG A 610 N PHE A 541 SHEET 1 B 2 MET A 571 GLU A 572 0 SHEET 2 B 2 LYS A 575 SER A 576 -1 O LYS A 575 N GLU A 572
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000