10 20 30 40 50 60 70 80 2DGZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 16-MAR-06 2DGZ
TITLE SOLUTION STRUCTURE OF THE HELICASE AND RNASE D C-TERMINAL TITLE 2 DOMAIN IN WERNER SYNDROME ATP-DEPENDENT HELICASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: WERNER SYNDROME PROTEIN VARIANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HELICASE AND RNASE D C-TERMINAL DOMAIN; COMPND 5 SYNONYM: WERNER SYNDROME ATP-DEPENDENT HELICASE; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WRN; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051212-13; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HRDC DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DGZ 1 VERSN REVDAT 1 16-SEP-06 2DGZ 0
JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HELICASE AND RNASE D JRNL TITL 2 C-TERMINAL DOMAIN IN WERNER SYNDROME ATP-DEPENDENT JRNL TITL 3 HELICASE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DGZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025407.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A1147 -34.93 -38.38 REMARK 500 1 GLN A1165 -70.23 -59.08 REMARK 500 1 LEU A1232 42.12 -81.37 REMARK 500 1 PRO A1238 -175.34 -69.74 REMARK 500 1 SER A1243 112.07 -166.05 REMARK 500 2 PRO A1143 -173.29 -69.74 REMARK 500 2 PRO A1175 -16.77 -47.98 REMARK 500 2 ILE A1201 102.09 -59.32 REMARK 500 2 ASP A1202 145.83 -31.46 REMARK 500 2 GLU A1206 129.61 -34.26 REMARK 500 2 LEU A1212 34.04 -92.08 REMARK 500 2 SER A1227 46.53 35.49 REMARK 500 2 LEU A1232 47.51 -80.93 REMARK 500 2 GLN A1239 96.69 -59.21 REMARK 500 3 SER A1141 124.08 -37.98 REMARK 500 3 PRO A1175 -17.23 -47.97 REMARK 500 3 ILE A1201 98.14 -55.42 REMARK 500 3 ASP A1202 143.64 -34.58 REMARK 500 3 LEU A1212 32.61 -87.28 REMARK 500 3 PRO A1214 -17.74 -47.97 REMARK 500 3 SER A1227 50.83 33.98 REMARK 500 3 LEU A1232 43.54 -85.49 REMARK 500 4 VAL A1144 168.35 -49.41 REMARK 500 4 PRO A1175 -16.76 -47.97 REMARK 500 4 LEU A1178 -70.09 -57.35 REMARK 500 4 GLU A1206 135.06 -38.86 REMARK 500 4 LEU A1212 35.53 -92.69 REMARK 500 4 PRO A1214 -17.08 -47.95 REMARK 500 4 SER A1227 51.03 34.90 REMARK 500 5 SER A1135 42.23 38.01 REMARK 500 5 SER A1141 115.16 -168.43 REMARK 500 5 GLN A1142 96.00 -32.50 REMARK 500 5 PRO A1175 -17.08 -47.96 REMARK 500 5 LEU A1212 32.26 -89.44 REMARK 500 5 PRO A1214 -18.16 -47.90 REMARK 500 5 SER A1227 51.53 33.70 REMARK 500 5 LEU A1232 44.97 -83.38 REMARK 500 5 LYS A1237 54.70 35.38 REMARK 500 5 PRO A1242 2.65 -69.81 REMARK 500 5 SER A1243 130.06 -35.22 REMARK 500 6 SER A1134 170.38 -55.39 REMARK 500 6 PRO A1143 -176.15 -69.74 REMARK 500 6 GLN A1165 -72.08 -89.24 REMARK 500 6 PRO A1175 -18.47 -47.95 REMARK 500 6 LEU A1212 34.52 -89.85 REMARK 500 6 PRO A1214 -17.15 -48.00 REMARK 500 6 SER A1227 46.48 34.23 REMARK 500 6 LEU A1232 40.60 -86.83 REMARK 500 7 PRO A1175 -16.64 -47.97 REMARK 500 7 ARG A1191 55.05 33.65 REMARK 500 7 ILE A1201 101.20 -53.53 REMARK 500 7 ASP A1202 145.89 -35.30 REMARK 500 7 ALA A1209 -39.51 -33.93 REMARK 500 7 PRO A1214 -16.94 -48.01 REMARK 500 7 LEU A1215 -71.34 -82.24 REMARK 500 7 SER A1227 50.78 33.84 REMARK 500 7 LEU A1232 41.90 -83.97 REMARK 500 7 SER A1240 134.08 -37.23 REMARK 500 7 PRO A1242 -176.29 -69.73 REMARK 500 8 SER A1137 93.79 -69.20 REMARK 500 8 SER A1140 47.29 36.47 REMARK 500 8 GLN A1165 -71.60 -82.00 REMARK 500 8 PRO A1175 -16.68 -48.05 REMARK 500 8 GLU A1206 130.71 -39.06 REMARK 500 8 LEU A1212 32.68 -90.70 REMARK 500 8 PRO A1214 -17.36 -47.99 REMARK 500 8 PHE A1222 -33.86 -38.95 REMARK 500 8 SER A1227 49.29 36.20 REMARK 500 8 LEU A1232 41.16 -84.14 REMARK 500 8 SER A1234 41.94 -89.53 REMARK 500 8 PRO A1238 -178.80 -69.78 REMARK 500 9 SER A1137 44.51 -80.46 REMARK 500 9 SER A1140 132.54 -35.80 REMARK 500 9 VAL A1144 143.62 -36.19 REMARK 500 9 ALA A1147 -35.86 -33.54 REMARK 500 9 PRO A1175 -17.45 -47.92 REMARK 500 9 GLU A1206 127.50 -36.41 REMARK 500 9 LEU A1212 30.90 -88.25 REMARK 500 9 PRO A1214 -18.15 -47.96 REMARK 500 9 PHE A1222 -36.98 -34.09 REMARK 500 9 LEU A1232 48.28 -77.18 REMARK 500 9 SER A1234 44.42 -94.77 REMARK 500 9 GLN A1239 125.55 -35.77 REMARK 500 10 SER A1135 -57.67 -120.67 REMARK 500 10 SER A1137 -52.91 -121.55 REMARK 500 10 VAL A1144 153.77 -47.28 REMARK 500 10 PRO A1175 -16.85 -48.05 REMARK 500 10 ARG A1191 54.95 33.37 REMARK 500 10 LEU A1212 34.85 -91.02 REMARK 500 10 PRO A1214 -19.22 -47.99 REMARK 500 10 SER A1227 42.58 34.38 REMARK 500 10 LEU A1232 40.88 -91.13 REMARK 500 10 PHE A1233 109.39 -174.97 REMARK 500 10 PRO A1242 1.24 -69.78 REMARK 500 11 SER A1137 42.14 -108.04 REMARK 500 11 PRO A1143 -174.54 -69.81 REMARK 500 11 GLN A1165 -70.18 -69.04 REMARK 500 11 PRO A1175 -17.77 -47.98 REMARK 500 11 ARG A1191 52.70 70.61 REMARK 500 11 GLU A1206 114.16 -38.08 REMARK 500 11 LEU A1212 31.47 -85.77 REMARK 500 11 SER A1227 42.69 34.32 REMARK 500 11 LEU A1232 37.01 -83.32 REMARK 500 11 PHE A1233 119.18 -174.99 REMARK 500 11 SER A1234 110.34 -160.51 REMARK 500 11 PRO A1238 86.57 -69.75 REMARK 500 12 GLN A1165 -72.59 -63.35 REMARK 500 12 PRO A1175 -17.42 -48.00 REMARK 500 12 LEU A1212 33.89 -90.18 REMARK 500 12 PRO A1214 -19.14 -47.99 REMARK 500 12 LEU A1232 38.51 -92.74 REMARK 500 12 SER A1243 117.11 -161.90 REMARK 500 13 SER A1137 -57.64 -126.85 REMARK 500 13 PRO A1143 -172.67 -69.76 REMARK 500 13 VAL A1144 170.33 -45.19 REMARK 500 13 PRO A1175 -16.41 -48.02 REMARK 500 13 GLU A1206 151.32 -47.69 REMARK 500 13 LEU A1212 30.36 -84.43 REMARK 500 13 PRO A1214 -17.59 -47.99 REMARK 500 13 SER A1227 49.76 32.55 REMARK 500 13 LEU A1232 40.93 -82.91 REMARK 500 13 SER A1235 91.41 -64.83 REMARK 500 14 SER A1141 146.93 -36.72 REMARK 500 14 PRO A1175 -16.74 -48.00 REMARK 500 14 LEU A1178 -72.34 -61.04 REMARK 500 14 GLU A1206 130.90 -35.44 REMARK 500 14 LEU A1212 30.73 -85.40 REMARK 500 14 PRO A1214 -18.94 -47.91 REMARK 500 14 LEU A1215 -70.77 -79.64 REMARK 500 14 SER A1227 46.77 35.55 REMARK 500 14 LEU A1232 35.79 -86.64 REMARK 500 15 SER A1134 -50.12 -122.36 REMARK 500 15 PRO A1175 -16.79 -47.94 REMARK 500 15 ILE A1201 100.93 -55.45 REMARK 500 15 ASP A1202 143.32 -34.80 REMARK 500 15 GLU A1206 140.63 -34.21 REMARK 500 15 ALA A1209 -39.61 -35.12 REMARK 500 15 LEU A1212 33.84 -91.84 REMARK 500 15 PRO A1214 -17.65 -48.03 REMARK 500 15 PHE A1222 -37.36 -38.36 REMARK 500 15 SER A1227 48.98 33.90 REMARK 500 15 LEU A1232 49.34 -76.73 REMARK 500 15 SER A1243 43.48 35.19 REMARK 500 16 SER A1137 148.56 -174.13 REMARK 500 16 PRO A1143 -173.53 -69.77 REMARK 500 16 PRO A1175 -16.93 -48.04 REMARK 500 16 ARG A1191 54.87 39.62 REMARK 500 16 LEU A1212 32.52 -88.99 REMARK 500 16 PRO A1214 -17.18 -48.03 REMARK 500 16 LEU A1232 43.61 -85.78 REMARK 500 16 LYS A1237 133.55 -35.01 REMARK 500 17 GLN A1142 124.52 -35.85 REMARK 500 17 PRO A1143 -175.86 -69.77 REMARK 500 17 PRO A1175 -16.51 -47.96 REMARK 500 17 ILE A1201 153.39 -43.33 REMARK 500 17 LEU A1212 32.95 -87.17 REMARK 500 17 PRO A1214 -17.57 -47.95 REMARK 500 17 SER A1227 39.52 39.37 REMARK 500 17 SER A1234 113.00 -175.03 REMARK 500 17 SER A1235 52.76 -96.01 REMARK 500 18 SER A1140 40.90 71.86 REMARK 500 18 GLN A1165 -70.15 -80.70 REMARK 500 18 PRO A1175 -16.81 -47.97 REMARK 500 18 ILE A1201 160.01 -42.63 REMARK 500 18 LEU A1212 31.76 -90.88 REMARK 500 18 PRO A1214 -17.14 -48.00 REMARK 500 18 LEU A1215 -70.94 -84.04 REMARK 500 18 LEU A1232 43.53 -83.36 REMARK 500 18 PHE A1233 41.24 -84.75 REMARK 500 18 SER A1234 43.76 35.09 REMARK 500 18 SER A1244 160.60 -48.81 REMARK 500 19 PRO A1175 -17.42 -47.96 REMARK 500 19 LEU A1212 30.05 -84.86 REMARK 500 19 PRO A1214 -17.91 -47.95 REMARK 500 19 PHE A1222 -34.40 -39.94 REMARK 500 19 SER A1227 48.85 34.75 REMARK 500 19 LEU A1232 42.58 -83.51 REMARK 500 19 PRO A1238 81.10 -69.71 REMARK 500 20 ASP A1172 33.63 72.14 REMARK 500 20 LYS A1189 -60.47 -97.42 REMARK 500 20 LEU A1212 32.58 -89.09 REMARK 500 20 PRO A1214 -17.26 -47.90 REMARK 500 20 LEU A1232 44.71 -88.41 REMARK 500 20 THR A1236 40.64 -88.03 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001883.1 RELATED DB: TARGETDB
DBREF 2DGZ A 1140 1239 UNP Q14191 WRN_HUMAN 1140 1239
SEQADV 2DGZ GLY A 1133 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ SER A 1134 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ SER A 1135 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ GLY A 1136 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ SER A 1137 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ SER A 1138 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ GLY A 1139 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ SER A 1240 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ GLY A 1241 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ PRO A 1242 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ SER A 1243 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ SER A 1244 UNP Q14191 CLONING ARTIFACT SEQADV 2DGZ GLY A 1245 UNP Q14191 CLONING ARTIFACT
SEQRES 1 A 113 GLY SER SER GLY SER SER GLY SER SER GLN PRO VAL ILE SEQRES 2 A 113 SER ALA GLN GLU GLN GLU THR GLN ILE VAL LEU TYR GLY SEQRES 3 A 113 LYS LEU VAL GLU ALA ARG GLN LYS HIS ALA ASN LYS MET SEQRES 4 A 113 ASP VAL PRO PRO ALA ILE LEU ALA THR ASN LYS ILE LEU SEQRES 5 A 113 VAL ASP MET ALA LYS MET ARG PRO THR THR VAL GLU ASN SEQRES 6 A 113 VAL LYS ARG ILE ASP GLY VAL SER GLU GLY LYS ALA ALA SEQRES 7 A 113 MET LEU ALA PRO LEU TRP GLU VAL ILE LYS HIS PHE CYS SEQRES 8 A 113 GLN THR ASN SER VAL GLN THR ASP LEU PHE SER SER THR SEQRES 9 A 113 LYS PRO GLN SER GLY PRO SER SER GLY
HELIX 1 1 SER A 1146 MET A 1171 1 26 HELIX 2 2 PRO A 1174 ALA A 1179 1 6 HELIX 3 3 THR A 1180 ARG A 1191 1 12 HELIX 4 4 THR A 1194 ILE A 1201 1 8 HELIX 5 5 GLY A 1207 MET A 1211 5 5 HELIX 6 6 LEU A 1212 THR A 1225 1 14
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000