10 20 30 40 50 60 70 80 2DGU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 15-MAR-06 2DGU
TITLE SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN TITLE 2 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: HNRNP Q, HNRNP-Q, SYNAPTOTAGMIN-BINDING, COMPND 6 CYTOPLASMIC RNA-INTERACTING PROTEIN, GLYCINE- AND TYROSINE- COMPND 7 RICH RNA-BINDING PROTEIN, GRY-RBP, NS1-ASSOCIATED PROTEIN COMPND 8 1; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYNCRIP; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051017-06; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DGU 1 VERSN REVDAT 1 15-SEP-06 2DGU 0
JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN JRNL TITL 2 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DGU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025402.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 328 42.48 -88.55 REMARK 500 1 LYS A 336 46.13 -106.71 REMARK 500 1 ASN A 344 36.40 70.66 REMARK 500 1 GLU A 355 -71.19 -74.21 REMARK 500 1 GLN A 360 -38.28 -37.67 REMARK 500 1 VAL A 385 -37.75 -37.99 REMARK 500 1 ASN A 392 107.72 -38.05 REMARK 500 1 PHE A 405 106.49 -51.67 REMARK 500 1 PRO A 409 90.84 -69.78 REMARK 500 1 GLU A 415 136.95 -170.31 REMARK 500 1 ARG A 416 110.74 -164.46 REMARK 500 2 LYS A 336 36.08 -86.32 REMARK 500 2 ASN A 344 39.61 70.73 REMARK 500 2 GLN A 360 -38.70 -38.84 REMARK 500 2 VAL A 385 -35.35 -36.00 REMARK 500 2 ASN A 392 116.61 -34.12 REMARK 500 3 ASN A 344 54.35 72.22 REMARK 500 3 GLN A 360 -39.18 -35.20 REMARK 500 3 VAL A 385 -38.63 -38.39 REMARK 500 3 ASN A 392 101.73 -34.29 REMARK 500 3 PRO A 409 -175.52 -69.79 REMARK 500 3 LYS A 412 77.92 -63.58 REMARK 500 3 PRO A 426 89.63 -69.75 REMARK 500 3 SER A 428 148.01 -171.11 REMARK 500 4 LYS A 336 42.74 -100.29 REMARK 500 4 ASN A 344 52.38 73.23 REMARK 500 4 ALA A 346 -176.61 -54.58 REMARK 500 4 GLU A 355 -73.48 -68.21 REMARK 500 4 GLN A 360 -38.68 -38.68 REMARK 500 4 VAL A 385 -36.87 -34.92 REMARK 500 4 ASN A 392 92.91 -35.09 REMARK 500 4 ASN A 400 95.88 -69.38 REMARK 500 4 PHE A 405 108.70 -54.71 REMARK 500 4 SER A 427 -60.88 -124.79 REMARK 500 5 LYS A 336 42.11 -107.94 REMARK 500 5 ASN A 344 43.85 73.46 REMARK 500 5 ALA A 346 178.84 -49.40 REMARK 500 5 GLN A 360 -35.37 -34.28 REMARK 500 5 LYS A 371 -72.04 -32.12 REMARK 500 5 VAL A 385 -32.83 -35.39 REMARK 500 5 ARG A 413 119.30 -173.88 REMARK 500 5 LYS A 414 148.74 -174.61 REMARK 500 5 GLN A 421 114.25 -165.65 REMARK 500 5 PRO A 426 -174.17 -69.78 REMARK 500 6 SER A 329 118.14 -168.71 REMARK 500 6 ASN A 344 39.19 70.24 REMARK 500 6 ALA A 346 172.29 -50.26 REMARK 500 6 VAL A 385 -39.87 -38.47 REMARK 500 6 ASN A 392 97.58 -36.68 REMARK 500 6 LYS A 414 143.78 -170.18 REMARK 500 6 GLU A 415 117.93 -163.74 REMARK 500 6 ARG A 420 105.63 -165.73 REMARK 500 6 SER A 427 44.92 34.79 REMARK 500 7 SER A 328 114.42 -164.50 REMARK 500 7 LYS A 336 83.91 -69.90 REMARK 500 7 ASN A 344 52.82 74.76 REMARK 500 7 GLN A 360 -32.24 -36.57 REMARK 500 7 VAL A 385 -35.03 -38.52 REMARK 500 7 ASN A 392 92.95 -37.19 REMARK 500 7 ARG A 413 106.17 -160.33 REMARK 500 7 LYS A 417 135.63 -172.15 REMARK 500 7 GLN A 421 139.74 -172.72 REMARK 500 8 ASN A 344 49.99 74.59 REMARK 500 8 ALA A 346 -179.47 -53.06 REMARK 500 8 GLU A 355 -70.09 -72.26 REMARK 500 8 LYS A 371 -71.65 -32.90 REMARK 500 8 VAL A 385 -36.04 -36.40 REMARK 500 8 ASN A 392 93.40 -34.00 REMARK 500 8 PHE A 405 108.73 -52.49 REMARK 500 8 ASP A 410 92.73 -61.83 REMARK 500 8 LYS A 412 151.18 -38.11 REMARK 500 8 LYS A 414 138.03 -170.35 REMARK 500 8 ARG A 420 119.16 -166.74 REMARK 500 8 ALA A 422 112.29 -174.89 REMARK 500 8 PRO A 426 -175.65 -69.71 REMARK 500 9 ASN A 344 33.27 72.54 REMARK 500 9 ALA A 346 176.83 -53.01 REMARK 500 9 GLU A 355 -71.49 -76.43 REMARK 500 9 GLN A 360 -37.24 -39.46 REMARK 500 9 LYS A 371 -73.64 -33.33 REMARK 500 9 VAL A 385 -39.39 -36.72 REMARK 500 9 ASN A 392 96.55 -34.17 REMARK 500 9 PRO A 426 -174.89 -69.76 REMARK 500 9 SER A 427 -176.62 -172.91 REMARK 500 9 SER A 428 -53.82 -128.05 REMARK 500 10 LYS A 336 79.11 -101.95 REMARK 500 10 ASN A 344 54.34 73.20 REMARK 500 10 VAL A 385 -35.42 -36.82 REMARK 500 10 ASP A 395 99.89 -68.73 REMARK 500 10 PHE A 405 108.95 -51.53 REMARK 500 10 ARG A 420 108.14 -165.96 REMARK 500 10 PRO A 426 -172.69 -69.73 REMARK 500 11 ASN A 344 37.45 72.70 REMARK 500 11 SER A 359 -61.84 -100.06 REMARK 500 11 GLN A 360 -37.84 -37.68 REMARK 500 11 GLU A 365 -44.02 -131.76 REMARK 500 11 VAL A 385 -35.36 -37.44 REMARK 500 11 ASN A 392 93.24 -34.21 REMARK 500 11 PRO A 409 93.72 -69.79 REMARK 500 11 LYS A 412 -64.82 -99.27 REMARK 500 11 ALA A 418 120.29 -172.23 REMARK 500 11 PRO A 426 -176.36 -69.71 REMARK 500 12 ASN A 344 46.81 74.16 REMARK 500 12 GLU A 355 -74.13 -72.18 REMARK 500 12 VAL A 385 -35.61 -36.46 REMARK 500 12 ASN A 392 91.47 -42.54 REMARK 500 12 PHE A 405 109.45 -53.70 REMARK 500 13 SER A 331 105.23 -39.36 REMARK 500 13 SER A 332 153.60 -39.57 REMARK 500 13 ASN A 344 41.21 74.81 REMARK 500 13 ALA A 346 -177.46 -56.17 REMARK 500 13 GLN A 360 -36.02 -39.65 REMARK 500 13 LYS A 371 -70.81 -33.70 REMARK 500 13 VAL A 385 -37.93 -37.90 REMARK 500 13 ASN A 392 94.49 -42.03 REMARK 500 14 SER A 328 -63.96 -109.82 REMARK 500 14 ALA A 335 37.52 35.34 REMARK 500 14 LYS A 336 45.77 34.48 REMARK 500 14 ALA A 346 173.04 -46.26 REMARK 500 14 PHE A 361 -73.92 -75.43 REMARK 500 14 VAL A 385 -39.66 -38.16 REMARK 500 14 GLN A 421 118.99 -174.09 REMARK 500 14 PRO A 426 -178.45 -69.81 REMARK 500 14 SER A 428 154.34 -38.25 REMARK 500 15 ASN A 344 39.12 72.91 REMARK 500 15 GLN A 360 -31.38 -37.96 REMARK 500 15 VAL A 385 -35.18 -37.08 REMARK 500 15 ASN A 392 93.11 -34.35 REMARK 500 15 LYS A 414 139.91 -170.63 REMARK 500 16 MET A 334 41.33 -106.57 REMARK 500 16 ALA A 346 -178.16 -69.41 REMARK 500 16 GLN A 360 -39.42 -37.68 REMARK 500 16 VAL A 385 -33.79 -35.79 REMARK 500 16 ASN A 392 93.98 -33.90 REMARK 500 16 LYS A 412 131.76 -172.87 REMARK 500 16 GLU A 415 119.96 -164.79 REMARK 500 16 LYS A 417 105.70 -167.17 REMARK 500 16 PRO A 426 -177.29 -69.80 REMARK 500 17 ASN A 344 35.47 73.06 REMARK 500 17 ALA A 346 -178.93 -67.52 REMARK 500 17 VAL A 385 -37.51 -36.41 REMARK 500 17 ASN A 392 93.41 -33.23 REMARK 500 17 PHE A 405 108.95 -58.16 REMARK 500 17 GLN A 411 79.14 -113.28 REMARK 500 17 SER A 427 -62.18 -134.11 REMARK 500 18 SER A 331 126.66 -170.04 REMARK 500 18 LYS A 336 43.91 -85.22 REMARK 500 18 ASN A 344 45.34 75.05 REMARK 500 18 ALA A 346 -175.00 -62.31 REMARK 500 18 GLU A 355 -71.14 -76.94 REMARK 500 18 GLN A 360 -39.57 -34.96 REMARK 500 18 VAL A 385 -35.08 -35.43 REMARK 500 18 PHE A 405 105.30 -49.52 REMARK 500 18 LYS A 417 144.53 -170.26 REMARK 500 19 ASN A 344 40.51 73.78 REMARK 500 19 GLN A 360 -39.38 -35.97 REMARK 500 19 VAL A 385 -39.70 -36.79 REMARK 500 19 ASN A 392 99.57 -37.79 REMARK 500 19 PRO A 426 -172.21 -69.76 REMARK 500 20 LYS A 336 75.59 -67.58 REMARK 500 20 GLU A 355 -72.41 -72.72 REMARK 500 20 VAL A 385 -35.47 -36.08 REMARK 500 20 ASN A 392 92.51 -39.20 REMARK 500 20 ARG A 413 -52.07 -123.07 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000744.1 RELATED DB: TARGETDB
DBREF 2DGU A 334 423 UNP O60506 HNRPQ_HUMAN 334 423
SEQADV 2DGU GLY A 327 UNP O60506 CLONING ARTIFACT SEQADV 2DGU SER A 328 UNP O60506 CLONING ARTIFACT SEQADV 2DGU SER A 329 UNP O60506 CLONING ARTIFACT SEQADV 2DGU GLY A 330 UNP O60506 CLONING ARTIFACT SEQADV 2DGU SER A 331 UNP O60506 CLONING ARTIFACT SEQADV 2DGU SER A 332 UNP O60506 CLONING ARTIFACT SEQADV 2DGU GLY A 333 UNP O60506 CLONING ARTIFACT SEQADV 2DGU SER A 424 UNP O60506 CLONING ARTIFACT SEQADV 2DGU GLY A 425 UNP O60506 CLONING ARTIFACT SEQADV 2DGU PRO A 426 UNP O60506 CLONING ARTIFACT SEQADV 2DGU SER A 427 UNP O60506 CLONING ARTIFACT SEQADV 2DGU SER A 428 UNP O60506 CLONING ARTIFACT SEQADV 2DGU GLY A 429 UNP O60506 CLONING ARTIFACT
SEQRES 1 A 103 GLY SER SER GLY SER SER GLY MET ALA LYS VAL LYS VAL SEQRES 2 A 103 LEU PHE VAL ARG ASN LEU ALA ASN THR VAL THR GLU GLU SEQRES 3 A 103 ILE LEU GLU LYS ALA PHE SER GLN PHE GLY LYS LEU GLU SEQRES 4 A 103 ARG VAL LYS LYS LEU LYS ASP TYR ALA PHE ILE HIS PHE SEQRES 5 A 103 ASP GLU ARG ASP GLY ALA VAL LYS ALA MET GLU GLU MET SEQRES 6 A 103 ASN GLY LYS ASP LEU GLU GLY GLU ASN ILE GLU ILE VAL SEQRES 7 A 103 PHE ALA LYS PRO PRO ASP GLN LYS ARG LYS GLU ARG LYS SEQRES 8 A 103 ALA GLN ARG GLN ALA ALA SER GLY PRO SER SER GLY
HELIX 1 1 THR A 350 GLY A 362 1 13 HELIX 2 2 GLU A 380 ASN A 392 1 13
SHEET 1 A 5 LEU A 364 LYS A 369 0 SHEET 2 A 5 ALA A 374 PHE A 378 -1 O HIS A 377 N GLU A 365 SHEET 3 A 5 LEU A 340 ARG A 343 -1 N VAL A 342 O ALA A 374 SHEET 4 A 5 GLU A 399 PHE A 405 -1 O VAL A 404 N PHE A 341 SHEET 5 A 5 LYS A 394 LEU A 396 -1 N LEU A 396 O GLU A 399
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000