10 20 30 40 50 60 70 80 2DGT - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 15-MAR-06 2DGT
TITLE SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN IN RNA- TITLE 2 BINDING PROTEIN 30
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 30; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 30, RNA-BINDING MOTIF COMPND 6 PROTEIN 4B; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM30; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051017-04; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DGT 1 VERSN REVDAT 1 15-SEP-06 2DGT 0
JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND RNA BINDING JRNL TITL 2 DOMAIN IN RNA-BINDING PROTEIN 30 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DGT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025401.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 72 98.94 -69.70 REMARK 500 1 ALA A 76 -65.69 -100.01 REMARK 500 1 PRO A 103 88.97 -69.86 REMARK 500 1 ILE A 105 -61.13 -99.91 REMARK 500 1 LYS A 111 -75.38 -36.27 REMARK 500 1 GLU A 135 99.85 -53.45 REMARK 500 1 SER A 158 -44.75 -132.22 REMARK 500 2 SER A 69 42.40 35.38 REMARK 500 2 SER A 73 42.29 -100.47 REMARK 500 2 SER A 77 175.19 -47.40 REMARK 500 2 PRO A 103 90.06 -69.78 REMARK 500 2 LYS A 111 -74.97 -35.21 REMARK 500 2 GLU A 135 99.67 -53.13 REMARK 500 3 SER A 72 83.76 -69.95 REMARK 500 3 PRO A 103 85.51 -69.72 REMARK 500 3 LYS A 111 -75.31 -34.19 REMARK 500 3 GLU A 119 -61.77 -92.89 REMARK 500 3 GLU A 135 103.66 -52.42 REMARK 500 3 ARG A 151 142.50 -36.29 REMARK 500 4 SER A 70 -54.38 -125.56 REMARK 500 4 LYS A 75 101.93 -47.82 REMARK 500 4 SER A 77 177.73 -59.05 REMARK 500 4 PRO A 103 92.55 -69.70 REMARK 500 4 LYS A 111 -75.12 -33.74 REMARK 500 4 GLU A 135 102.47 -50.12 REMARK 500 4 PRO A 156 85.24 -69.72 REMARK 500 5 SER A 73 175.11 -58.42 REMARK 500 5 PRO A 103 83.38 -69.80 REMARK 500 5 LYS A 111 -71.07 -35.87 REMARK 500 5 GLU A 119 -61.03 -92.02 REMARK 500 5 GLU A 135 102.22 -54.83 REMARK 500 5 SER A 154 136.18 -39.74 REMARK 500 6 SER A 70 117.18 -167.22 REMARK 500 6 SER A 77 -177.18 -170.29 REMARK 500 6 PRO A 103 80.99 -69.81 REMARK 500 6 VAL A 104 152.31 -46.79 REMARK 500 6 LYS A 111 -75.20 -34.08 REMARK 500 6 ARG A 129 -18.34 -49.66 REMARK 500 6 SER A 146 42.78 -97.66 REMARK 500 6 ARG A 151 153.63 -40.30 REMARK 500 6 SER A 154 104.03 -57.07 REMARK 500 7 SER A 73 44.59 -82.44 REMARK 500 7 SER A 77 -178.73 -175.01 REMARK 500 7 PRO A 103 88.11 -69.79 REMARK 500 7 LYS A 111 -75.20 -38.43 REMARK 500 7 GLU A 119 -61.65 -92.80 REMARK 500 7 GLU A 135 97.85 -59.89 REMARK 500 7 ALA A 153 119.49 -171.66 REMARK 500 8 SER A 77 171.50 -46.68 REMARK 500 8 PRO A 103 83.67 -69.77 REMARK 500 8 ILE A 105 -60.49 -100.36 REMARK 500 8 LYS A 111 -75.02 -36.58 REMARK 500 8 GLU A 119 -60.63 -107.03 REMARK 500 8 GLU A 135 101.13 -57.74 REMARK 500 8 LEU A 145 157.40 -40.36 REMARK 500 8 THR A 152 106.22 -49.43 REMARK 500 8 SER A 158 170.27 -44.93 REMARK 500 9 SER A 70 -58.92 -125.65 REMARK 500 9 PRO A 103 88.85 -69.65 REMARK 500 9 LYS A 111 -71.08 -37.23 REMARK 500 9 GLU A 119 -62.62 -92.72 REMARK 500 9 ARG A 129 -18.41 -48.75 REMARK 500 9 ASN A 133 43.39 72.85 REMARK 500 9 GLU A 135 102.74 -52.91 REMARK 500 10 PRO A 103 90.04 -69.70 REMARK 500 10 GLU A 106 118.86 -164.57 REMARK 500 10 LYS A 111 -75.01 -35.68 REMARK 500 10 PRO A 156 0.19 -69.74 REMARK 500 11 SER A 70 42.29 37.77 REMARK 500 11 LYS A 75 47.40 -84.24 REMARK 500 11 SER A 77 -178.69 -51.99 REMARK 500 11 PRO A 103 92.22 -69.75 REMARK 500 11 LYS A 111 -75.11 -36.59 REMARK 500 11 ARG A 129 -17.90 -49.67 REMARK 500 11 GLU A 135 99.43 -49.91 REMARK 500 11 SER A 154 85.63 -67.50 REMARK 500 12 SER A 70 108.03 -59.50 REMARK 500 12 SER A 72 76.57 -100.54 REMARK 500 12 SER A 73 107.81 -163.95 REMARK 500 12 SER A 77 -174.73 -64.53 REMARK 500 12 PRO A 103 79.90 -69.73 REMARK 500 12 VAL A 104 155.98 -44.02 REMARK 500 12 LYS A 111 -75.31 -34.97 REMARK 500 12 GLU A 135 99.51 -54.51 REMARK 500 12 LEU A 150 35.82 -85.60 REMARK 500 12 ARG A 151 95.09 -69.18 REMARK 500 13 SER A 73 79.02 -117.57 REMARK 500 13 PRO A 103 84.50 -69.77 REMARK 500 13 LYS A 111 -75.32 -35.30 REMARK 500 13 GLU A 135 105.81 -52.98 REMARK 500 14 SER A 70 118.32 -161.03 REMARK 500 14 ALA A 76 -51.33 -123.44 REMARK 500 14 PRO A 103 89.46 -69.82 REMARK 500 14 LYS A 111 -75.36 -34.29 REMARK 500 14 GLU A 119 -61.71 -92.53 REMARK 500 14 ASN A 133 50.93 72.97 REMARK 500 14 GLU A 135 106.68 -47.19 REMARK 500 14 THR A 147 139.23 -172.70 REMARK 500 15 PRO A 103 81.70 -69.74 REMARK 500 15 LYS A 111 -71.21 -36.00 REMARK 500 15 GLU A 135 107.72 -50.55 REMARK 500 15 GLN A 137 29.48 47.72 REMARK 500 15 SER A 154 127.72 -38.07 REMARK 500 15 SER A 157 143.20 -38.89 REMARK 500 16 SER A 70 121.80 -173.64 REMARK 500 16 LYS A 75 38.70 37.32 REMARK 500 16 PRO A 103 89.23 -69.77 REMARK 500 16 LYS A 111 -74.90 -36.54 REMARK 500 16 ARG A 129 -19.80 -47.97 REMARK 500 16 GLU A 135 106.72 -53.28 REMARK 500 16 GLN A 137 25.78 49.83 REMARK 500 16 SER A 148 38.11 -98.29 REMARK 500 16 ALA A 153 103.50 -34.88 REMARK 500 17 SER A 70 41.79 -100.44 REMARK 500 17 SER A 77 -178.94 -63.71 REMARK 500 17 PRO A 103 83.42 -69.76 REMARK 500 17 ILE A 105 -61.08 -99.99 REMARK 500 17 LYS A 111 -75.22 -35.37 REMARK 500 17 GLU A 135 107.58 -56.46 REMARK 500 17 SER A 146 41.48 -83.61 REMARK 500 17 THR A 147 28.65 46.20 REMARK 500 17 SER A 148 125.96 -34.79 REMARK 500 18 LYS A 75 43.30 -105.72 REMARK 500 18 PRO A 103 91.15 -69.78 REMARK 500 18 LYS A 111 -71.11 -37.65 REMARK 500 18 ASN A 133 50.45 72.13 REMARK 500 18 GLU A 135 102.94 -51.48 REMARK 500 18 SER A 154 40.28 38.46 REMARK 500 19 SER A 69 176.70 -55.07 REMARK 500 19 ALA A 76 159.56 -46.95 REMARK 500 19 PRO A 103 90.60 -69.71 REMARK 500 19 LYS A 111 -75.36 -34.75 REMARK 500 19 GLU A 135 104.66 -49.37 REMARK 500 19 THR A 152 -31.07 -130.58 REMARK 500 19 SER A 154 42.42 37.54 REMARK 500 19 SER A 158 41.53 39.89 REMARK 500 20 SER A 72 42.74 37.06 REMARK 500 20 SER A 77 -179.21 -67.76 REMARK 500 20 PRO A 103 83.85 -69.69 REMARK 500 20 GLU A 106 119.32 -166.65 REMARK 500 20 LYS A 111 -75.27 -35.52 REMARK 500 20 LEU A 150 -31.93 -35.83 REMARK 500 20 SER A 157 83.24 -63.36 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002005506.1 RELATED DB: TARGETDB
DBREF 2DGT A 75 153 UNP Q9BQ04 RBM4B_HUMAN 75 155
SEQADV 2DGT GLY A 68 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT SER A 69 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT SER A 70 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT GLY A 71 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT SER A 72 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT SER A 73 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT GLY A 74 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT SER A 154 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT GLY A 155 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT PRO A 156 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT SER A 157 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT SER A 158 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DGT GLY A 159 UNP Q9BQ04 CLONING ARTIFACT
SEQRES 1 A 92 GLY SER SER GLY SER SER GLY LYS ALA SER THR LYS LEU SEQRES 2 A 92 HIS VAL GLY ASN ILE SER PRO THR CYS THR ASN GLN GLU SEQRES 3 A 92 LEU ARG ALA LYS PHE GLU GLU TYR GLY PRO VAL ILE GLU SEQRES 4 A 92 CYS ASP ILE VAL LYS ASP TYR ALA PHE VAL HIS MET GLU SEQRES 5 A 92 ARG ALA GLU ASP ALA VAL GLU ALA ILE ARG GLY LEU ASP SEQRES 6 A 92 ASN THR GLU PHE GLN GLY LYS ARG MET HIS VAL GLN LEU SEQRES 7 A 92 SER THR SER ARG LEU ARG THR ALA SER GLY PRO SER SER SEQRES 8 A 92 GLY
HELIX 1 1 THR A 90 GLU A 100 1 11 HELIX 2 2 ARG A 120 ASP A 132 1 13
SHEET 1 A 5 GLU A 106 ILE A 109 0 SHEET 2 A 5 TYR A 113 MET A 118 -1 O HIS A 117 N GLU A 106 SHEET 3 A 5 THR A 78 GLY A 83 -1 N LEU A 80 O VAL A 116 SHEET 4 A 5 LYS A 139 LEU A 145 -1 O GLN A 144 N HIS A 81 SHEET 5 A 5 THR A 134 PHE A 136 -1 N PHE A 136 O LYS A 139
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000