10 20 30 40 50 60 70 80 2DGS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 15-MAR-06 2DGS
TITLE SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN IN DAZ- TITLE 2 ASSOCIATED PROTEIN 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DAZ-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: DELETED IN AZOOSPERMIA-ASSOCIATED PROTEIN 1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DAZAP1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051017-03; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DGS 1 VERSN REVDAT 1 15-SEP-06 2DGS 0
JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.TERADA,T.KIGAWA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND RNA BINDING JRNL TITL 2 DOMAIN IN DAZ-ASSOCIATED PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DGS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025400.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL (PH7.0), REMARK 210 100MM NACL, 1MM D-DTT, 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 113 38.74 -88.21 REMARK 500 1 GLU A 164 -37.70 -36.30 REMARK 500 1 HIS A 174 28.17 48.17 REMARK 500 1 SER A 199 -175.78 -172.05 REMARK 500 2 SER A 108 43.07 -105.45 REMARK 500 2 ASN A 113 34.60 -92.33 REMARK 500 2 ASN A 123 -62.02 -100.23 REMARK 500 2 CYS A 124 120.96 -37.62 REMARK 500 3 SER A 107 100.84 -57.37 REMARK 500 3 SER A 110 40.28 -92.99 REMARK 500 3 LYS A 111 108.99 -53.13 REMARK 500 3 ASN A 113 41.94 -82.63 REMARK 500 3 VAL A 138 109.99 -161.42 REMARK 500 3 SER A 196 143.78 -35.46 REMARK 500 4 SER A 110 109.87 -171.35 REMARK 500 4 HIS A 174 26.46 48.61 REMARK 500 4 ASP A 192 132.07 -38.47 REMARK 500 5 ASN A 113 48.19 -90.41 REMARK 500 5 PHE A 175 144.80 -172.37 REMARK 500 5 ARG A 191 125.24 -35.50 REMARK 500 5 PRO A 198 -177.87 -69.77 REMARK 500 6 PHE A 175 148.32 -171.87 REMARK 500 6 MET A 179 48.22 38.81 REMARK 500 6 LYS A 181 142.81 -175.13 REMARK 500 7 SER A 105 85.04 -69.02 REMARK 500 7 SER A 110 -62.97 -100.71 REMARK 500 7 ASN A 113 56.46 -104.11 REMARK 500 7 GLU A 164 -39.03 -35.17 REMARK 500 8 ASN A 113 34.20 -88.60 REMARK 500 8 ASN A 123 -62.86 -102.43 REMARK 500 8 CYS A 124 128.76 -34.38 REMARK 500 8 PHE A 175 134.72 -172.01 REMARK 500 8 LYS A 181 149.21 -174.15 REMARK 500 8 ASP A 192 75.71 -107.09 REMARK 500 9 ASN A 113 41.75 34.42 REMARK 500 9 GLU A 126 -70.17 -34.57 REMARK 500 10 SER A 110 115.06 -35.27 REMARK 500 10 LYS A 111 111.48 -39.34 REMARK 500 10 ARG A 191 39.66 34.30 REMARK 500 10 LYS A 194 136.85 -173.02 REMARK 500 11 LYS A 111 125.53 -39.39 REMARK 500 11 ASN A 113 42.51 -86.84 REMARK 500 11 ASN A 123 -64.22 -100.25 REMARK 500 11 CYS A 124 126.57 -35.13 REMARK 500 11 HIS A 174 25.22 49.31 REMARK 500 11 PHE A 175 145.99 -170.13 REMARK 500 11 SER A 193 168.35 -45.54 REMARK 500 11 PRO A 198 -168.67 -69.70 REMARK 500 11 SER A 200 -69.19 -99.47 REMARK 500 12 LYS A 194 152.97 -41.31 REMARK 500 13 LYS A 111 119.73 -161.70 REMARK 500 13 ASN A 123 -33.84 -133.63 REMARK 500 13 GLU A 189 153.47 -48.42 REMARK 500 14 SER A 104 123.09 -36.45 REMARK 500 14 SER A 108 169.07 -47.14 REMARK 500 14 GLN A 169 -38.30 -39.12 REMARK 500 15 ASP A 192 148.28 -35.17 REMARK 500 16 SER A 105 113.31 -35.21 REMARK 500 16 SER A 107 38.29 -98.87 REMARK 500 16 SER A 112 108.80 -50.76 REMARK 500 16 ARG A 187 108.93 -55.69 REMARK 500 16 SER A 193 48.89 -90.64 REMARK 500 17 SER A 105 97.90 -68.77 REMARK 500 17 LYS A 111 99.73 -59.25 REMARK 500 17 SER A 200 149.70 -39.47 REMARK 500 18 ASN A 113 40.20 -90.64 REMARK 500 18 PHE A 175 147.50 -172.85 REMARK 500 18 PRO A 190 0.00 -69.77 REMARK 500 18 PRO A 198 97.00 -69.68 REMARK 500 18 SER A 199 43.96 -106.31 REMARK 500 19 ASN A 113 43.14 -87.47 REMARK 500 19 PRO A 190 87.84 -69.76 REMARK 500 19 SER A 196 148.92 -39.09 REMARK 500 20 SER A 110 168.61 -47.83 REMARK 500 20 PRO A 121 -174.24 -69.78 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012495.2 RELATED DB: TARGETDB
DBREF 2DGS A 110 195 UNP Q96EP5 DAZP1_HUMAN 110 195
SEQADV 2DGS GLY A 103 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 104 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 105 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS GLY A 106 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 107 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 108 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS GLY A 109 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 196 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS GLY A 197 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS PRO A 198 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 199 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 200 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS GLY A 201 UNP Q96EP5 CLONING ARTIFACT
SEQRES 1 A 99 GLY SER SER GLY SER SER GLY SER LYS SER ASN LYS ILE SEQRES 2 A 99 PHE VAL GLY GLY ILE PRO HIS ASN CYS GLY GLU THR GLU SEQRES 3 A 99 LEU ARG GLU TYR PHE LYS LYS PHE GLY VAL VAL THR GLU SEQRES 4 A 99 VAL VAL MET ILE TYR ASP ALA GLU LYS GLN ARG PRO ARG SEQRES 5 A 99 GLY PHE GLY PHE ILE THR PHE GLU ASP GLU GLN SER VAL SEQRES 6 A 99 ASP GLN ALA VAL ASN MET HIS PHE HIS ASP ILE MET GLY SEQRES 7 A 99 LYS LYS VAL GLU VAL LYS ARG ALA GLU PRO ARG ASP SER SEQRES 8 A 99 LYS SER SER GLY PRO SER SER GLY
HELIX 1 1 GLY A 125 LYS A 134 1 10 HELIX 2 2 ASP A 163 HIS A 174 1 12
SHEET 1 A 4 VAL A 139 MET A 144 0 SHEET 2 A 4 PHE A 156 PHE A 161 -1 O THR A 160 N GLU A 141 SHEET 3 A 4 LYS A 114 GLY A 118 -1 N ILE A 115 O ILE A 159 SHEET 4 A 4 GLU A 184 ARG A 187 -1 O LYS A 186 N PHE A 116
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000