10 20 30 40 50 60 70 80 2DCE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 06-JAN-06 2DCE
TITLE SOLUTION STRUCTURE OF THE SWIRM DOMAIN OF HUMAN KIAA1915 TITLE 2 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: KIAA1915 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SWIRM DOMAIN, RESIDUES 8-111; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA1915; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P041018-14; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS SWIRM DOMAIN, KIAA1915, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.YONEYAMA,N.TOCHIO,T.UMEHARA,S.KOSHIBA,M.INOUE,A.TANAKA, AUTHOR 2 T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI)
REVDAT 4 24-FEB-09 2DCE 1 VERSN REVDAT 3 15-MAY-07 2DCE 3 ATOM REVDAT 2 15-MAY-07 2DCE 1 JRNL REVDAT 1 06-JUL-06 2DCE 0
JRNL AUTH M.YONEYAMA,N.TOCHIO,T.UMEHARA,S.KOSHIBA,M.INOUE, JRNL AUTH 2 T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA,S.WATANABE,Y.TOMO, JRNL AUTH 3 Y.NISHIMURA,T.HARADA,T.TERADA,M.SHIROUZU, JRNL AUTH 4 Y.HAYASHIZAKI,O.OHARA,A.TANAKA,T.KIGAWA,S.YOKOYAMA JRNL TITL STRUCTURAL AND FUNCTIONAL DIFFERENCES OF SWIRM JRNL TITL 2 DOMAIN SUBTYPES JRNL REF J.MOL.BIOL. V. 369 222 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17428495 JRNL DOI 10.1016/J.JMB.2007.03.027
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DCE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-06. REMARK 100 THE RCSB ID CODE IS RCSB025248.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 320MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM SWIRM DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS HCL; 300MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9318, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 12 29.04 37.57 REMARK 500 1 LYS A 65 154.68 -40.55 REMARK 500 1 ALA A 99 -33.73 -34.00 REMARK 500 1 GLN A 106 42.80 -96.84 REMARK 500 2 SER A 6 97.78 -55.83 REMARK 500 2 HIS A 8 124.52 -37.52 REMARK 500 2 GLU A 40 -72.84 -59.70 REMARK 500 2 LYS A 65 155.05 -38.41 REMARK 500 2 LYS A 79 -66.76 -104.36 REMARK 500 2 ALA A 99 -34.62 -33.81 REMARK 500 2 GLU A 105 -35.04 -34.41 REMARK 500 2 GLN A 106 39.45 -83.09 REMARK 500 3 GLU A 9 128.54 -171.45 REMARK 500 3 GLU A 12 48.15 35.01 REMARK 500 3 LYS A 65 154.83 -36.40 REMARK 500 3 ASN A 80 46.00 -79.81 REMARK 500 3 GLN A 106 36.54 -95.47 REMARK 500 4 GLU A 11 73.03 -110.88 REMARK 500 4 LYS A 65 154.56 -43.51 REMARK 500 4 LEU A 78 45.31 71.74 REMARK 500 4 CYS A 81 -75.07 -63.16 REMARK 500 4 ALA A 99 -37.07 -34.09 REMARK 500 5 HIS A 8 42.88 -87.39 REMARK 500 5 GLU A 10 155.98 -43.14 REMARK 500 5 GLU A 30 -36.43 -38.05 REMARK 500 5 ARG A 42 155.44 -37.04 REMARK 500 5 ARG A 54 -70.02 -51.64 REMARK 500 5 LYS A 65 154.47 -39.38 REMARK 500 5 PRO A 76 1.33 -69.76 REMARK 500 5 LYS A 79 -74.58 -98.12 REMARK 500 5 CYS A 81 50.42 -106.25 REMARK 500 5 VAL A 84 -36.89 -35.83 REMARK 500 5 ALA A 107 164.54 -45.08 REMARK 500 6 SER A 2 44.56 38.99 REMARK 500 6 HIS A 8 39.13 -89.95 REMARK 500 6 GLU A 29 -32.60 -34.73 REMARK 500 6 ARG A 42 -178.97 -66.23 REMARK 500 6 GLN A 43 -70.39 -95.22 REMARK 500 6 LYS A 65 154.31 -44.04 REMARK 500 6 LEU A 78 69.23 -106.90 REMARK 500 6 ASN A 80 -72.53 -40.83 REMARK 500 6 ALA A 99 -33.65 -35.01 REMARK 500 7 ARG A 54 -70.69 -51.88 REMARK 500 7 LYS A 65 154.86 -35.99 REMARK 500 7 LYS A 79 -66.04 -99.80 REMARK 500 7 ALA A 99 -36.73 -33.77 REMARK 500 7 GLN A 106 44.07 -98.06 REMARK 500 8 SER A 2 140.90 -170.48 REMARK 500 8 GLU A 10 157.24 -48.12 REMARK 500 8 GLU A 11 53.31 -90.37 REMARK 500 8 LYS A 65 154.64 -38.89 REMARK 500 8 GLN A 106 46.88 -98.31 REMARK 500 9 HIS A 8 78.96 -106.51 REMARK 500 9 GLU A 11 -27.03 -39.01 REMARK 500 9 GLU A 12 42.08 -108.70 REMARK 500 9 GLU A 29 -34.04 -34.26 REMARK 500 9 LYS A 65 154.51 -42.73 REMARK 500 9 ASN A 80 49.82 38.37 REMARK 500 9 ALA A 99 -35.72 -34.01 REMARK 500 9 ASN A 101 51.26 34.68 REMARK 500 10 GLU A 10 -50.10 -122.10 REMARK 500 10 GLU A 29 -38.96 -34.10 REMARK 500 10 ASN A 55 -35.35 -37.28 REMARK 500 10 LYS A 65 154.47 -43.53 REMARK 500 10 ALA A 99 -37.14 -33.65 REMARK 500 10 ASN A 101 50.67 36.05 REMARK 500 11 GLU A 11 -61.65 -98.32 REMARK 500 11 PRO A 36 0.07 -69.76 REMARK 500 11 ARG A 42 139.93 -35.80 REMARK 500 11 LYS A 65 154.11 -43.02 REMARK 500 11 LYS A 79 -60.36 -94.46 REMARK 500 11 ALA A 99 -37.12 -34.63 REMARK 500 11 GLN A 106 31.67 -97.01 REMARK 500 12 GLU A 10 119.02 -34.82 REMARK 500 12 LYS A 14 133.85 -174.97 REMARK 500 12 ASN A 55 -39.91 -35.40 REMARK 500 12 LYS A 65 154.67 -37.77 REMARK 500 12 LYS A 67 151.36 -49.18 REMARK 500 12 GLN A 106 58.27 -104.56 REMARK 500 13 GLU A 40 40.36 -93.74 REMARK 500 13 GLN A 43 -70.31 -86.68 REMARK 500 13 LYS A 65 154.61 -44.09 REMARK 500 13 LYS A 79 -66.82 -107.21 REMARK 500 13 CYS A 81 -75.17 -52.58 REMARK 500 13 ALA A 99 -37.59 -33.82 REMARK 500 14 LYS A 14 135.74 -172.35 REMARK 500 14 GLU A 19 136.19 -39.54 REMARK 500 14 ARG A 54 -74.19 -52.12 REMARK 500 14 LYS A 65 154.49 -39.98 REMARK 500 14 PRO A 76 97.03 -69.74 REMARK 500 14 LEU A 78 66.97 -101.41 REMARK 500 14 ALA A 99 -35.76 -35.75 REMARK 500 14 GLN A 106 36.90 -90.10 REMARK 500 15 GLU A 11 78.95 -111.76 REMARK 500 15 GLN A 43 -75.04 -77.37 REMARK 500 15 ASN A 55 -39.17 -36.49 REMARK 500 15 LYS A 65 154.59 -38.57 REMARK 500 15 LYS A 67 152.70 -47.08 REMARK 500 15 PRO A 76 97.63 -69.78 REMARK 500 15 ASP A 83 78.68 -101.78 REMARK 500 15 VAL A 84 34.10 33.90 REMARK 500 15 ALA A 99 -38.68 -34.88 REMARK 500 15 ALA A 107 162.55 -40.87 REMARK 500 16 GLU A 11 58.98 -90.93 REMARK 500 16 GLU A 29 -26.75 -39.47 REMARK 500 16 PRO A 36 2.97 -69.77 REMARK 500 16 LYS A 65 154.84 -37.51 REMARK 500 16 PRO A 76 2.58 -69.77 REMARK 500 16 ALA A 99 -36.01 -33.84 REMARK 500 16 ALA A 107 159.91 -39.57 REMARK 500 17 LEU A 13 147.24 -35.83 REMARK 500 17 GLU A 29 -35.20 -39.52 REMARK 500 17 LYS A 65 155.27 -39.49 REMARK 500 17 GLU A 105 -30.00 -38.09 REMARK 500 17 GLN A 106 45.40 -90.93 REMARK 500 18 HIS A 8 40.79 -83.89 REMARK 500 18 GLU A 10 41.63 -82.92 REMARK 500 18 ASN A 55 -34.42 -38.42 REMARK 500 18 LYS A 65 155.03 -39.06 REMARK 500 18 LYS A 67 157.82 -49.59 REMARK 500 18 VAL A 84 -32.99 -36.52 REMARK 500 18 ALA A 99 -36.49 -33.93 REMARK 500 19 SER A 2 127.42 -174.44 REMARK 500 19 GLU A 10 107.58 -40.28 REMARK 500 19 LYS A 65 154.22 -40.90 REMARK 500 19 PRO A 76 2.84 -69.80 REMARK 500 19 ALA A 99 -33.23 -35.03 REMARK 500 19 GLN A 106 57.13 -104.80 REMARK 500 20 SER A 5 40.01 -88.51 REMARK 500 20 GLU A 9 44.22 -94.20 REMARK 500 20 GLU A 10 79.32 -104.19 REMARK 500 20 PRO A 36 2.96 -69.84 REMARK 500 20 LYS A 65 154.49 -41.33 REMARK 500 20 LYS A 79 -70.03 -94.82 REMARK 500 20 ALA A 99 -37.38 -34.27 REMARK 500 20 ASN A 101 46.60 35.50 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101882.2 RELATED DB: TARGETDB
DBREF 2DCE A 8 111 UNP Q5VVJ2 MYSM1_HUMAN 367 470
SEQADV 2DCE GLY A 1 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE SER A 2 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE SER A 3 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE GLY A 4 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE SER A 5 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE SER A 6 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE GLY A 7 UNP Q5VVJ2 CLONING ARTIFACT
SEQRES 1 A 111 GLY SER SER GLY SER SER GLY HIS GLU GLU GLU GLU LEU SEQRES 2 A 111 LYS PRO PRO GLU GLN GLU ILE GLU ILE ASP ARG ASN ILE SEQRES 3 A 111 ILE GLN GLU GLU GLU LYS GLN ALA ILE PRO GLU PHE PHE SEQRES 4 A 111 GLU GLY ARG GLN ALA LYS THR PRO GLU ARG TYR LEU LYS SEQRES 5 A 111 ILE ARG ASN TYR ILE LEU ASP GLN TRP GLU ILE CYS LYS SEQRES 6 A 111 PRO LYS TYR LEU ASN LYS THR SER VAL ARG PRO GLY LEU SEQRES 7 A 111 LYS ASN CYS GLY ASP VAL ASN CYS ILE GLY ARG ILE HIS SEQRES 8 A 111 THR TYR LEU GLU LEU ILE GLY ALA ILE ASN PHE GLY CYS SEQRES 9 A 111 GLU GLN ALA VAL TYR ASN ARG
HELIX 1 1 GLN A 28 GLN A 33 1 6 HELIX 2 2 ILE A 35 GLU A 40 5 6 HELIX 3 3 THR A 46 LYS A 65 1 20 HELIX 4 4 ASN A 70 VAL A 74 5 5 HELIX 5 5 ASP A 83 GLY A 98 1 16
CISPEP 1 LYS A 65 PRO A 66 1 -0.06 CISPEP 2 LYS A 65 PRO A 66 2 -0.04 CISPEP 3 LYS A 65 PRO A 66 3 -0.12 CISPEP 4 LYS A 65 PRO A 66 4 -0.18 CISPEP 5 LYS A 65 PRO A 66 5 -0.07 CISPEP 6 LYS A 65 PRO A 66 6 -0.04 CISPEP 7 LYS A 65 PRO A 66 7 -0.11 CISPEP 8 LYS A 65 PRO A 66 8 -0.07 CISPEP 9 LYS A 65 PRO A 66 9 -0.18 CISPEP 10 LYS A 65 PRO A 66 10 -0.10 CISPEP 11 LYS A 65 PRO A 66 11 -0.06 CISPEP 12 LYS A 65 PRO A 66 12 -0.10 CISPEP 13 LYS A 65 PRO A 66 13 -0.12 CISPEP 14 LYS A 65 PRO A 66 14 -0.11 CISPEP 15 LYS A 65 PRO A 66 15 -0.14 CISPEP 16 LYS A 65 PRO A 66 16 -0.06 CISPEP 17 LYS A 65 PRO A 66 17 -0.10 CISPEP 18 LYS A 65 PRO A 66 18 -0.09 CISPEP 19 LYS A 65 PRO A 66 19 -0.13 CISPEP 20 LYS A 65 PRO A 66 20 -0.11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000