10 20 30 40 50 60 70 80 2DBK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 15-DEC-05 2DBK
TITLE SOLUTION STRUCTURES OF THE SH3 DOMAIN OF HUMAN CRK-LIKE TITLE 2 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRK-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CRKL; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050207-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS CRKL, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 4 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DBK 1 VERSN REVDAT 1 19-DEC-06 2DBK 0
JRNL AUTH M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE SH3 DOMAIN OF HUMAN JRNL TITL 2 CRK-LIKE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DBK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025220.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SH3 DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 119.09 -34.63 REMARK 500 1 LEU A 9 153.60 -48.54 REMARK 500 1 SER A 11 92.06 -61.89 REMARK 500 1 GLN A 76 49.06 -106.75 REMARK 500 2 SER A 2 41.91 37.16 REMARK 500 2 GLN A 13 44.11 -84.76 REMARK 500 2 LYS A 32 38.52 -96.09 REMARK 500 2 VAL A 39 107.77 -36.70 REMARK 500 2 PRO A 75 2.76 -69.80 REMARK 500 2 GLN A 76 44.03 -79.79 REMARK 500 3 VAL A 39 107.38 -40.23 REMARK 500 3 GLN A 76 49.81 36.18 REMARK 500 3 PRO A 85 0.66 -69.77 REMARK 500 4 PRO A 8 -177.23 -69.70 REMARK 500 4 GLN A 13 174.44 -51.20 REMARK 500 4 LYS A 32 26.98 39.31 REMARK 500 4 VAL A 39 107.42 -36.03 REMARK 500 4 SER A 86 -62.78 -102.60 REMARK 500 5 PRO A 8 -175.91 -69.68 REMARK 500 5 PRO A 10 93.00 -69.70 REMARK 500 5 ALA A 19 117.93 -162.65 REMARK 500 5 CYS A 28 170.84 -56.90 REMARK 500 5 VAL A 39 107.00 -47.87 REMARK 500 5 GLN A 76 39.46 35.00 REMARK 500 6 PRO A 8 -167.85 -69.72 REMARK 500 6 THR A 12 102.27 -55.05 REMARK 500 6 VAL A 39 113.26 -39.24 REMARK 500 6 GLN A 76 53.27 -92.69 REMARK 500 6 ASN A 81 106.31 -51.79 REMARK 500 7 SER A 11 104.58 -41.09 REMARK 500 7 ASN A 14 -177.12 -51.33 REMARK 500 7 TYR A 30 41.82 -104.83 REMARK 500 7 VAL A 39 109.13 -41.63 REMARK 500 7 GLN A 76 52.89 -91.37 REMARK 500 8 SER A 3 117.05 -165.12 REMARK 500 8 PRO A 8 -165.90 -69.77 REMARK 500 8 PRO A 10 86.69 -69.67 REMARK 500 8 ASN A 77 96.10 -32.61 REMARK 500 9 SER A 11 175.95 -50.58 REMARK 500 9 ASN A 59 32.71 39.89 REMARK 500 9 GLN A 76 34.85 -95.24 REMARK 500 9 ASN A 77 96.19 -32.79 REMARK 500 9 GLU A 80 42.94 -106.25 REMARK 500 10 THR A 12 39.70 39.43 REMARK 500 10 ASN A 14 114.41 -39.24 REMARK 500 10 VAL A 39 109.54 -40.65 REMARK 500 10 PRO A 75 2.63 -69.74 REMARK 500 10 GLN A 76 47.36 -79.13 REMARK 500 10 PRO A 78 1.56 -69.79 REMARK 500 10 ASP A 79 -60.46 -108.28 REMARK 500 10 GLU A 82 145.42 -39.38 REMARK 500 10 PRO A 85 87.96 -69.75 REMARK 500 11 PRO A 8 -172.87 -69.74 REMARK 500 11 THR A 12 157.21 -49.16 REMARK 500 11 GLN A 13 36.57 -83.70 REMARK 500 11 ASN A 59 41.19 29.97 REMARK 500 11 GLU A 80 84.57 -66.68 REMARK 500 11 SER A 86 103.36 -47.53 REMARK 500 12 PRO A 10 -177.16 -69.70 REMARK 500 12 VAL A 39 110.43 -37.95 REMARK 500 12 PRO A 75 2.13 -69.70 REMARK 500 12 GLN A 76 42.77 -84.41 REMARK 500 12 PRO A 85 89.23 -69.76 REMARK 500 13 LEU A 9 138.38 -39.00 REMARK 500 13 SER A 11 141.93 -172.72 REMARK 500 13 VAL A 39 113.47 -34.69 REMARK 500 13 ASN A 77 96.07 -32.63 REMARK 500 13 PRO A 85 89.50 -69.77 REMARK 500 13 SER A 86 78.95 -66.00 REMARK 500 14 VAL A 39 108.45 -41.43 REMARK 500 14 PRO A 75 1.73 -69.72 REMARK 500 14 ASP A 79 154.41 -41.61 REMARK 500 15 SER A 5 45.45 36.59 REMARK 500 16 VAL A 39 108.70 -40.74 REMARK 500 16 PRO A 75 2.08 -69.82 REMARK 500 16 GLN A 76 48.32 -80.28 REMARK 500 16 GLU A 80 80.58 -61.81 REMARK 500 17 SER A 3 41.51 37.92 REMARK 500 17 SER A 6 158.25 -43.13 REMARK 500 17 ASP A 31 97.91 -66.51 REMARK 500 17 VAL A 39 109.07 -36.01 REMARK 500 17 ASN A 59 25.34 49.22 REMARK 500 17 PRO A 75 1.94 -69.73 REMARK 500 17 PRO A 85 -179.10 -69.81 REMARK 500 18 SER A 11 137.15 -37.27 REMARK 500 18 VAL A 39 113.21 -36.73 REMARK 500 18 ASN A 59 91.48 -31.19 REMARK 500 18 GLN A 76 46.28 -78.30 REMARK 500 18 PRO A 78 2.63 -69.75 REMARK 500 18 GLU A 82 115.49 -161.33 REMARK 500 18 SER A 86 46.23 35.76 REMARK 500 19 TYR A 30 55.00 -106.51 REMARK 500 19 ILE A 50 43.15 -85.18 REMARK 500 19 ASN A 51 -38.77 -131.94 REMARK 500 19 GLN A 76 46.51 38.51 REMARK 500 20 VAL A 39 106.07 -33.88 REMARK 500 20 ASN A 59 99.23 -33.70 REMARK 500 20 GLN A 76 44.32 -98.02 REMARK 500 20 ASN A 77 96.05 -32.68 REMARK 500 20 SER A 87 175.91 -54.66 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2DBK A 8 82 UNP P46109 CRKL_HUMAN 229 303
SEQADV 2DBK GLY A 1 UNP P46109 CLONING ARTIFACT SEQADV 2DBK SER A 2 UNP P46109 CLONING ARTIFACT SEQADV 2DBK SER A 3 UNP P46109 CLONING ARTIFACT SEQADV 2DBK GLY A 4 UNP P46109 CLONING ARTIFACT SEQADV 2DBK SER A 5 UNP P46109 CLONING ARTIFACT SEQADV 2DBK SER A 6 UNP P46109 CLONING ARTIFACT SEQADV 2DBK GLY A 7 UNP P46109 CLONING ARTIFACT SEQADV 2DBK SER A 83 UNP P46109 CLONING ARTIFACT SEQADV 2DBK GLY A 84 UNP P46109 CLONING ARTIFACT SEQADV 2DBK PRO A 85 UNP P46109 CLONING ARTIFACT SEQADV 2DBK SER A 86 UNP P46109 CLONING ARTIFACT SEQADV 2DBK SER A 87 UNP P46109 CLONING ARTIFACT SEQADV 2DBK GLY A 88 UNP P46109 CLONING ARTIFACT
SEQRES 1 A 88 GLY SER SER GLY SER SER GLY PRO LEU PRO SER THR GLN SEQRES 2 A 88 ASN GLY PRO VAL PHE ALA LYS ALA ILE GLN LYS ARG VAL SEQRES 3 A 88 PRO CYS ALA TYR ASP LYS THR ALA LEU ALA LEU GLU VAL SEQRES 4 A 88 GLY ASP ILE VAL LYS VAL THR ARG MET ASN ILE ASN GLY SEQRES 5 A 88 GLN TRP GLU GLY GLU VAL ASN GLY ARG LYS GLY LEU PHE SEQRES 6 A 88 PRO PHE THR HIS VAL LYS ILE PHE ASP PRO GLN ASN PRO SEQRES 7 A 88 ASP GLU ASN GLU SER GLY PRO SER SER GLY
SHEET 1 A 5 LYS A 62 PHE A 65 0 SHEET 2 A 5 TRP A 54 GLU A 57 -1 N GLY A 56 O GLY A 63 SHEET 3 A 5 ILE A 42 MET A 48 -1 N ARG A 47 O GLU A 55 SHEET 4 A 5 VAL A 17 ALA A 21 -1 N ALA A 19 O VAL A 43 SHEET 5 A 5 VAL A 70 ILE A 72 -1 O LYS A 71 N LYS A 20
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000