10 20 30 40 50 60 70 80 2DBG - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 15-DEC-05 2DBG
TITLE SOLUTION STRUCTURE OF THE PYRIN (PAAD-DAPIN) DOMAIN IN TITLE 2 HUMAN MYELOID CELL NUCLEAR DIFFERENTIATION ANTIGEN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYELOID CELL NUCLEAR DIFFERENTIATION ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PYRIN DOMAIN; COMPND 5 SYNONYM: MNDA; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AB1735_E12; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050613-16; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS INTERFERON INDUCTION, DNA-BINDING, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, IMMUNE SYSTEM
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.SAITO,M.INOUE,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DBG 1 VERSN REVDAT 1 15-JUN-06 2DBG 0
JRNL AUTH K.SAITO,M.INOUE,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PYRIN (PAAD-DAPIN) JRNL TITL 2 DOMAIN IN HUMAN MYELOID CELL NUCLEAR JRNL TITL 3 DIFFERENTIATION ANTIGEN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, AT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DBG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025216.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN, 20MM D-TRIS-HCL, REMARK 210 PH7.0, 100MM NACL, 1MM D-DTT, REMARK 210 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 2002, REMARK 210 NMRVIEW 5, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 10 84.03 60.77 REMARK 500 1 LYS A 19 61.40 -114.03 REMARK 500 1 LEU A 82 44.54 -95.91 REMARK 500 1 SER A 102 96.50 60.40 REMARK 500 2 SER A 3 37.22 -99.02 REMARK 500 2 SER A 5 -54.16 -145.78 REMARK 500 2 ASN A 10 150.34 64.55 REMARK 500 2 LYS A 19 50.92 -90.78 REMARK 500 2 ALA A 76 31.43 -98.45 REMARK 500 2 LEU A 82 32.92 -96.68 REMARK 500 2 ALA A 97 33.09 -143.73 REMARK 500 2 SER A 102 94.95 58.70 REMARK 500 3 SER A 2 101.16 60.46 REMARK 500 3 MET A 8 31.84 -163.43 REMARK 500 3 LYS A 19 47.08 -93.37 REMARK 500 3 ALA A 76 32.35 -98.16 REMARK 500 3 ASP A 78 40.08 -102.08 REMARK 500 3 LEU A 82 30.95 -98.21 REMARK 500 3 LYS A 95 45.82 -92.64 REMARK 500 3 SER A 98 -46.67 -151.19 REMARK 500 4 SER A 3 104.01 60.43 REMARK 500 4 SER A 5 -53.40 -123.23 REMARK 500 4 SER A 6 -50.94 -132.76 REMARK 500 4 MET A 8 111.45 60.86 REMARK 500 4 LYS A 19 58.94 -101.64 REMARK 500 4 ASP A 78 30.96 -98.10 REMARK 500 4 LEU A 82 35.08 -98.19 REMARK 500 5 SER A 3 -61.99 -147.98 REMARK 500 5 SER A 5 34.06 -167.40 REMARK 500 5 MET A 8 -60.85 -135.02 REMARK 500 5 ALA A 76 50.72 -93.20 REMARK 500 5 ASP A 78 48.55 -93.06 REMARK 500 5 LYS A 95 53.80 -100.64 REMARK 500 5 ALA A 97 120.30 62.12 REMARK 500 6 SER A 2 -46.92 -150.40 REMARK 500 6 SER A 5 -54.20 -149.67 REMARK 500 6 SER A 6 -74.19 -76.61 REMARK 500 6 LYS A 19 55.93 -94.66 REMARK 500 6 ASN A 51 -167.16 -110.13 REMARK 500 6 ALA A 76 31.35 -98.50 REMARK 500 6 ALA A 97 -172.24 61.09 REMARK 500 6 SER A 101 78.52 -110.26 REMARK 500 7 SER A 2 -46.28 -156.18 REMARK 500 7 SER A 6 168.53 60.28 REMARK 500 7 MET A 8 30.96 -99.07 REMARK 500 7 VAL A 9 -66.73 -133.04 REMARK 500 7 LYS A 19 55.16 -93.21 REMARK 500 7 ASP A 78 30.68 -98.78 REMARK 500 7 LEU A 82 40.01 -96.86 REMARK 500 7 VAL A 96 74.50 -67.32 REMARK 500 7 SER A 98 167.20 60.64 REMARK 500 8 SER A 2 32.02 -161.80 REMARK 500 8 VAL A 9 -56.64 -130.48 REMARK 500 8 LYS A 19 52.94 -92.29 REMARK 500 8 ASP A 39 -63.29 -96.67 REMARK 500 8 LEU A 82 32.02 -98.75 REMARK 500 8 ALA A 97 -169.51 -110.61 REMARK 500 8 SER A 98 35.68 -167.33 REMARK 500 9 MET A 8 88.13 -158.31 REMARK 500 9 LYS A 19 54.15 -90.25 REMARK 500 9 LEU A 82 39.83 -97.15 REMARK 500 9 VAL A 96 43.02 -95.56 REMARK 500 9 ALA A 97 -45.82 -132.31 REMARK 500 10 SER A 6 31.79 -149.07 REMARK 500 10 LYS A 19 45.99 -95.45 REMARK 500 10 ALA A 76 30.63 -99.17 REMARK 500 10 ASP A 78 46.64 -93.93 REMARK 500 10 ALA A 97 -79.10 64.37 REMARK 500 10 SER A 101 102.15 63.57 REMARK 500 10 SER A 102 99.92 60.78 REMARK 500 11 SER A 6 -58.22 -140.36 REMARK 500 11 ASP A 78 34.85 -98.01 REMARK 500 11 VAL A 96 32.59 -97.81 REMARK 500 11 SER A 101 -68.46 -156.05 REMARK 500 12 SER A 2 -50.71 -147.56 REMARK 500 12 SER A 3 -42.74 -174.82 REMARK 500 12 ASN A 10 117.83 62.23 REMARK 500 12 LYS A 19 47.46 -92.76 REMARK 500 12 LEU A 23 42.25 -107.22 REMARK 500 12 ASP A 78 46.45 -99.92 REMARK 500 12 LEU A 82 30.65 -98.57 REMARK 500 12 ALA A 97 175.21 62.23 REMARK 500 13 VAL A 9 -41.22 -174.95 REMARK 500 13 LYS A 19 59.75 -103.38 REMARK 500 13 LYS A 95 -69.40 -95.33 REMARK 500 13 ALA A 97 -178.10 -177.02 REMARK 500 14 SER A 2 -58.84 -134.93 REMARK 500 14 VAL A 9 -45.12 -157.93 REMARK 500 14 LYS A 19 48.13 -92.97 REMARK 500 14 ASP A 78 30.85 -98.27 REMARK 500 15 SER A 2 29.91 -140.74 REMARK 500 15 SER A 3 91.66 58.60 REMARK 500 15 SER A 5 -51.61 -131.56 REMARK 500 15 VAL A 9 138.67 63.82 REMARK 500 15 LYS A 19 48.98 -94.94 REMARK 500 15 LEU A 23 34.67 -99.75 REMARK 500 15 ASP A 78 32.47 -99.72 REMARK 500 15 ALA A 97 125.93 63.32 REMARK 500 16 SER A 2 117.71 -171.84 REMARK 500 16 SER A 3 94.65 60.31 REMARK 500 16 MET A 8 -49.17 -136.89 REMARK 500 16 LYS A 19 54.75 -107.15 REMARK 500 16 ASP A 78 47.82 -93.51 REMARK 500 16 LEU A 82 32.98 -99.86 REMARK 500 16 VAL A 96 40.53 -96.28 REMARK 500 16 ALA A 97 106.89 -170.31 REMARK 500 17 SER A 5 35.35 -156.28 REMARK 500 17 SER A 6 133.06 63.63 REMARK 500 17 MET A 8 34.88 -99.87 REMARK 500 17 LYS A 19 45.76 -94.36 REMARK 500 17 ALA A 76 30.99 -98.38 REMARK 500 17 ASP A 78 38.17 -97.75 REMARK 500 17 LEU A 82 42.25 -95.90 REMARK 500 17 VAL A 96 74.38 -67.58 REMARK 500 17 PRO A 100 101.22 -52.16 REMARK 500 17 SER A 101 -48.65 -150.41 REMARK 500 18 MET A 8 103.54 -169.64 REMARK 500 18 LYS A 19 50.93 -97.13 REMARK 500 18 ASP A 78 43.12 -95.74 REMARK 500 18 LEU A 82 42.61 -101.69 REMARK 500 18 SER A 101 105.43 61.46 REMARK 500 18 SER A 102 157.71 61.21 REMARK 500 19 SER A 2 -178.41 -175.70 REMARK 500 19 SER A 6 158.54 60.57 REMARK 500 19 LYS A 19 59.53 -102.89 REMARK 500 19 ASP A 78 55.73 -105.30 REMARK 500 19 VAL A 96 68.12 -69.95 REMARK 500 19 PRO A 100 95.44 -52.14 REMARK 500 19 SER A 102 36.47 -150.51 REMARK 500 20 SER A 3 99.80 60.46 REMARK 500 20 VAL A 9 87.23 57.94 REMARK 500 20 ASN A 10 175.12 59.94 REMARK 500 20 LYS A 19 60.42 -109.80 REMARK 500 20 LEU A 23 40.40 -109.64 REMARK 500 20 PHE A 63 77.76 -118.82 REMARK 500 20 ALA A 76 30.74 -98.77 REMARK 500 20 ASP A 78 37.15 -99.69 REMARK 500 20 LEU A 82 30.88 -98.81 REMARK 500 20 VAL A 96 -70.72 67.01 REMARK 500 20 ALA A 97 -176.46 61.06 REMARK 500 20 SER A 98 79.38 -116.66 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003001042.1 RELATED DB: TARGETDB
DBREF 2DBG A 8 97 UNP P41218 MNDA_HUMAN 1 90
SEQADV 2DBG GLY A 1 UNP P41218 CLONING ARTIFACT SEQADV 2DBG SER A 2 UNP P41218 CLONING ARTIFACT SEQADV 2DBG SER A 3 UNP P41218 CLONING ARTIFACT SEQADV 2DBG GLY A 4 UNP P41218 CLONING ARTIFACT SEQADV 2DBG SER A 5 UNP P41218 CLONING ARTIFACT SEQADV 2DBG SER A 6 UNP P41218 CLONING ARTIFACT SEQADV 2DBG GLY A 7 UNP P41218 CLONING ARTIFACT SEQADV 2DBG SER A 98 UNP P41218 CLONING ARTIFACT SEQADV 2DBG GLY A 99 UNP P41218 CLONING ARTIFACT SEQADV 2DBG PRO A 100 UNP P41218 CLONING ARTIFACT SEQADV 2DBG SER A 101 UNP P41218 CLONING ARTIFACT SEQADV 2DBG SER A 102 UNP P41218 CLONING ARTIFACT SEQADV 2DBG GLY A 103 UNP P41218 CLONING ARTIFACT
SEQRES 1 A 103 GLY SER SER GLY SER SER GLY MET VAL ASN GLU TYR LYS SEQRES 2 A 103 LYS ILE LEU LEU LEU LYS GLY PHE GLU LEU MET ASP ASP SEQRES 3 A 103 TYR HIS PHE THR SER ILE LYS SER LEU LEU ALA TYR ASP SEQRES 4 A 103 LEU GLY LEU THR THR LYS MET GLN GLU GLU TYR ASN ARG SEQRES 5 A 103 ILE LYS ILE THR ASP LEU MET GLU LYS LYS PHE GLN GLY SEQRES 6 A 103 VAL ALA CYS LEU ASP LYS LEU ILE GLU LEU ALA LYS ASP SEQRES 7 A 103 MET PRO SER LEU LYS ASN LEU VAL ASN ASN LEU ARG LYS SEQRES 8 A 103 GLU LYS SER LYS VAL ALA SER GLY PRO SER SER GLY
HELIX 1 1 ASN A 10 LYS A 19 1 10 HELIX 2 2 ASP A 25 GLY A 41 1 17 HELIX 3 3 THR A 43 TYR A 50 1 8 HELIX 4 4 ASN A 51 PHE A 63 1 13 HELIX 5 5 VAL A 66 ALA A 76 1 11 HELIX 6 6 MET A 79 SER A 81 5 3 HELIX 7 7 LEU A 82 ALA A 97 1 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000