10 20 30 40 50 60 70 80 2DB3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE/RNA 14-DEC-05 2DB3
TITLE STRUCTURAL BASIS FOR RNA UNWINDING BY THE DEAD-BOX PROTEIN TITLE 2 DROSOPHILA VASA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'; COMPND 3 CHAIN: E, F, G, H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ATP-DEPENDENT RNA HELICASE VASA; COMPND 7 CHAIN: A, B, C, D; COMPND 8 FRAGMENT: RESIDUES 200-623; COMPND 9 SYNONYM: VASA PROTEIN, ANTIGEN MAB46F11; COMPND 10 EC: 3.6.1.3; COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 5 ORGANISM_COMMON: FRUIT FLY; SOURCE 6 ORGANISM_TAXID: 7227; SOURCE 7 GENE: VASA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 CODON PLUS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1
KEYWDS DEAD-BOX, HELICASE, PROTEIN-RNA COMPLEX, ATPASE, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL KEYWDS 3 GENOMICS, HYDROLASE/RNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR T.SENGOKU,O.NUREKI,A.NAKAMURA,S.KOBAYASHI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DB3 1 VERSN REVDAT 1 02-MAY-06 2DB3 0
JRNL AUTH T.SENGOKU,O.NUREKI,A.NAKAMURA,S.KOBAYASHI, JRNL AUTH 2 S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR RNA UNWINDING BY THE DEAD-BOX JRNL TITL 2 PROTEIN DROSOPHILA VASA. JRNL REF CELL(CAMBRIDGE,MASS.) V. 125 287 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16630817 JRNL DOI 10.1016/J.CELL.2006.01.054
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.SENGOKU,O.NUREKI,N.DOHMAE,A.NAKAMURA,S.YOKOYAMA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 THE HELICASE DOMAINS OF VASA COMPLEXED WITH RNA REMARK 1 TITL 3 AND AN ATP ANALOGUE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 320 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 14747711 REMARK 1 DOI 10.1107/S0907444903025897
REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2369677.490 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 117457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 11749 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 15530 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1761 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13184 REMARK 3 NUCLEIC ACID ATOMS : 488 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 1319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.10000 REMARK 3 B22 (A**2) : 8.11000 REMARK 3 B33 (A**2) : -4.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.92 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.960 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.660 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.490 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.330 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 45.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ANP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : ANP.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : WATER.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DB3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025204.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-02; 01-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0; 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL41XU; BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.912; 0.9794, 0.9796, REMARK 200 0.9840, 0.9710 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117511 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M ADA PH 6.5, 0.1M LI2SO4, 1-2% REMARK 280 ISOPROPYL ALCOHOL, 69MM CYMAL-3, 9-12% PEG4000, PH 6.50, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 71.16550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U E 8 REMARK 465 U E 9 REMARK 465 U E 10 REMARK 465 U F 8 REMARK 465 U F 9 REMARK 465 U F 10 REMARK 465 U G 8 REMARK 465 U G 9 REMARK 465 U G 10 REMARK 465 U H 1 REMARK 465 U H 8 REMARK 465 U H 9 REMARK 465 U H 10 REMARK 465 GLY A 190 REMARK 465 PRO A 191 REMARK 465 LEU A 192 REMARK 465 GLY A 193 REMARK 465 SER A 194 REMARK 465 PRO A 195 REMARK 465 GLU A 196 REMARK 465 PHE A 197 REMARK 465 PRO A 198 REMARK 465 GLY A 199 REMARK 465 GLU A 200 REMARK 465 PHE A 201 REMARK 465 THR A 622 REMARK 465 CYS A 623 REMARK 465 GLY B 190 REMARK 465 PRO B 191 REMARK 465 LEU B 192 REMARK 465 GLY B 193 REMARK 465 SER B 194 REMARK 465 PRO B 195 REMARK 465 GLU B 196 REMARK 465 PHE B 197 REMARK 465 PRO B 198 REMARK 465 GLY B 199 REMARK 465 GLU B 200 REMARK 465 PHE B 201 REMARK 465 THR B 622 REMARK 465 CYS B 623 REMARK 465 GLY C 190 REMARK 465 PRO C 191 REMARK 465 LEU C 192 REMARK 465 GLY C 193 REMARK 465 SER C 194 REMARK 465 PRO C 195 REMARK 465 GLU C 196 REMARK 465 PHE C 197 REMARK 465 PRO C 198 REMARK 465 GLY C 199 REMARK 465 GLU C 200 REMARK 465 PHE C 201 REMARK 465 THR C 622 REMARK 465 CYS C 623 REMARK 465 GLY D 190 REMARK 465 PRO D 191 REMARK 465 LEU D 192 REMARK 465 GLY D 193 REMARK 465 SER D 194 REMARK 465 PRO D 195 REMARK 465 GLU D 196 REMARK 465 PHE D 197 REMARK 465 PRO D 198 REMARK 465 GLY D 199 REMARK 465 GLU D 200 REMARK 465 PHE D 201 REMARK 465 THR D 622 REMARK 465 CYS D 623
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U E 1 O5' C5' C4' O4' C3' C2' O2' REMARK 470 U E 1 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U E 1 C5 C6 REMARK 470 U E 7 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U E 7 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U E 7 C5 C6 REMARK 470 U F 1 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U F 1 C6 REMARK 470 U H 2 P OP1 OP2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 238 NH2 ARG B 283 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 203 85.56 57.87 REMARK 500 ASP A 239 72.88 26.71 REMARK 500 SER A 249 31.84 -146.13 REMARK 500 ILE A 349 -100.59 -81.77 REMARK 500 GLU A 363 -74.20 -58.41 REMARK 500 PHE A 435 82.65 -168.05 REMARK 500 GLN A 488 120.69 -174.69 REMARK 500 PRO A 515 98.65 -63.15 REMARK 500 SER A 547 8.76 -64.12 REMARK 500 LYS A 597 -9.91 -153.68 REMARK 500 ALA B 211 -56.86 -25.87 REMARK 500 ASP B 239 74.22 19.10 REMARK 500 SER B 249 57.69 -110.05 REMARK 500 GLN B 290 159.69 -49.76 REMARK 500 GLU B 344 18.79 59.08 REMARK 500 SER B 432 161.86 176.80 REMARK 500 PHE B 435 90.43 -162.48 REMARK 500 ASN B 449 51.31 38.40 REMARK 500 GLU B 483 -72.42 -52.95 REMARK 500 GLU B 487 -70.61 -75.20 REMARK 500 ASP B 490 136.61 -31.58 REMARK 500 SER B 547 1.43 -64.40 REMARK 500 ASP C 239 84.48 25.83 REMARK 500 PHE C 435 89.87 -169.23 REMARK 500 PRO C 515 95.19 -58.68 REMARK 500 SER C 547 3.21 -65.89 REMARK 500 ILE D 203 89.53 75.08 REMARK 500 ASP D 239 75.03 26.47 REMARK 500 ASP D 251 55.58 38.97 REMARK 500 ARG D 367 0.19 -68.68 REMARK 500 PHE D 435 80.39 -164.31 REMARK 500 GLU D 513 30.08 70.53 REMARK 500 PRO D 515 98.42 -66.82 REMARK 500 SER D 547 2.34 -65.13 REMARK 500 LYS D 597 -26.33 -154.04 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D3067 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A3096 DISTANCE = 5.46 ANGSTROMS REMARK 525 HOH B3200 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH C3276 DISTANCE = 6.83 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2903 O REMARK 620 2 HOH A3008 O 170.0 REMARK 620 3 HOH A3054 O 91.8 89.3 REMARK 620 4 HOH A3105 O 91.0 98.7 99.7 REMARK 620 5 ANP A2901 O3G 79.7 90.3 92.4 164.9 REMARK 620 6 ANP A2901 O1B 77.8 99.5 166.5 89.2 77.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B3046 O REMARK 620 2 HOH B3118 O 87.3 REMARK 620 3 ANP B2902 O3G 95.4 91.9 REMARK 620 4 ANP B2902 O1B 171.4 97.2 77.1 REMARK 620 5 HOH B2903 O 94.8 90.8 169.5 92.5 REMARK 620 6 HOH B3044 O 97.1 173.7 83.2 77.9 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C2803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP C2903 O1B REMARK 620 2 HOH C2904 O 166.5 REMARK 620 3 HOH C2905 O 79.8 97.1 REMARK 620 4 HOH C3178 O 90.5 90.3 166.4 REMARK 620 5 HOH C3177 O 91.9 101.6 98.0 91.7 REMARK 620 6 ANP C2903 O3G 74.1 92.6 85.1 83.1 164.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D2804 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP D2904 O1B REMARK 620 2 HOH D3034 O 80.5 REMARK 620 3 HOH D3095 O 92.9 95.9 REMARK 620 4 HOH D3096 O 96.2 170.4 93.2 REMARK 620 5 HOH D2905 O 166.8 87.3 93.4 95.0 REMARK 620 6 ANP D2904 O3G 79.2 79.2 171.3 91.3 93.6 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2801 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2802 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 2803 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 2804 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 2901 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 2902 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP C 2903 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP D 2904
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TRT001000262.1 RELATED DB: TARGETDB
DBREF 2DB3 A 200 623 UNP P09052 VASA_DROME 200 623 DBREF 2DB3 B 200 623 UNP P09052 VASA_DROME 200 623 DBREF 2DB3 C 200 623 UNP P09052 VASA_DROME 200 623 DBREF 2DB3 D 200 623 UNP P09052 VASA_DROME 200 623 DBREF 2DB3 E 1 10 PDB 2DB3 2DB3 1 10 DBREF 2DB3 F 1 10 PDB 2DB3 2DB3 1 10 DBREF 2DB3 G 1 10 PDB 2DB3 2DB3 1 10 DBREF 2DB3 H 1 10 PDB 2DB3 2DB3 1 10
SEQADV 2DB3 GLY A 190 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO A 191 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 LEU A 192 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY A 193 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 SER A 194 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO A 195 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLU A 196 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PHE A 197 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO A 198 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY A 199 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY B 190 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO B 191 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 LEU B 192 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY B 193 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 SER B 194 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO B 195 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLU B 196 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PHE B 197 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO B 198 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY B 199 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY C 190 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO C 191 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 LEU C 192 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY C 193 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 SER C 194 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO C 195 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLU C 196 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PHE C 197 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO C 198 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY C 199 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY D 190 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO D 191 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 LEU D 192 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY D 193 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 SER D 194 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO D 195 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLU D 196 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PHE D 197 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 PRO D 198 UNP P09052 CLONING ARTIFACT SEQADV 2DB3 GLY D 199 UNP P09052 CLONING ARTIFACT
SEQRES 1 E 10 U U U U U U U U U U SEQRES 1 F 10 U U U U U U U U U U SEQRES 1 G 10 U U U U U U U U U U SEQRES 1 H 10 U U U U U U U U U U SEQRES 1 A 434 GLY PRO LEU GLY SER PRO GLU PHE PRO GLY GLU PHE TYR SEQRES 2 A 434 ILE PRO PRO GLU PRO SER ASN ASP ALA ILE GLU ILE PHE SEQRES 3 A 434 SER SER GLY ILE ALA SER GLY ILE HIS PHE SER LYS TYR SEQRES 4 A 434 ASN ASN ILE PRO VAL LYS VAL THR GLY SER ASP VAL PRO SEQRES 5 A 434 GLN PRO ILE GLN HIS PHE THR SER ALA ASP LEU ARG ASP SEQRES 6 A 434 ILE ILE ILE ASP ASN VAL ASN LYS SER GLY TYR LYS ILE SEQRES 7 A 434 PRO THR PRO ILE GLN LYS CYS SER ILE PRO VAL ILE SER SEQRES 8 A 434 SER GLY ARG ASP LEU MET ALA CYS ALA GLN THR GLY SER SEQRES 9 A 434 GLY LYS THR ALA ALA PHE LEU LEU PRO ILE LEU SER LYS SEQRES 10 A 434 LEU LEU GLU ASP PRO HIS GLU LEU GLU LEU GLY ARG PRO SEQRES 11 A 434 GLN VAL VAL ILE VAL SER PRO THR ARG GLU LEU ALA ILE SEQRES 12 A 434 GLN ILE PHE ASN GLU ALA ARG LYS PHE ALA PHE GLU SER SEQRES 13 A 434 TYR LEU LYS ILE GLY ILE VAL TYR GLY GLY THR SER PHE SEQRES 14 A 434 ARG HIS GLN ASN GLU CYS ILE THR ARG GLY CYS HIS VAL SEQRES 15 A 434 VAL ILE ALA THR PRO GLY ARG LEU LEU ASP PHE VAL ASP SEQRES 16 A 434 ARG THR PHE ILE THR PHE GLU ASP THR ARG PHE VAL VAL SEQRES 17 A 434 LEU ASP GLU ALA ASP ARG MET LEU ASP MET GLY PHE SER SEQRES 18 A 434 GLU ASP MET ARG ARG ILE MET THR HIS VAL THR MET ARG SEQRES 19 A 434 PRO GLU HIS GLN THR LEU MET PHE SER ALA THR PHE PRO SEQRES 20 A 434 GLU GLU ILE GLN ARG MET ALA GLY GLU PHE LEU LYS ASN SEQRES 21 A 434 TYR VAL PHE VAL ALA ILE GLY ILE VAL GLY GLY ALA CYS SEQRES 22 A 434 SER ASP VAL LYS GLN THR ILE TYR GLU VAL ASN LYS TYR SEQRES 23 A 434 ALA LYS ARG SER LYS LEU ILE GLU ILE LEU SER GLU GLN SEQRES 24 A 434 ALA ASP GLY THR ILE VAL PHE VAL GLU THR LYS ARG GLY SEQRES 25 A 434 ALA ASP PHE LEU ALA SER PHE LEU SER GLU LYS GLU PHE SEQRES 26 A 434 PRO THR THR SER ILE HIS GLY ASP ARG LEU GLN SER GLN SEQRES 27 A 434 ARG GLU GLN ALA LEU ARG ASP PHE LYS ASN GLY SER MET SEQRES 28 A 434 LYS VAL LEU ILE ALA THR SER VAL ALA SER ARG GLY LEU SEQRES 29 A 434 ASP ILE LYS ASN ILE LYS HIS VAL ILE ASN TYR ASP MET SEQRES 30 A 434 PRO SER LYS ILE ASP ASP TYR VAL HIS ARG ILE GLY ARG SEQRES 31 A 434 THR GLY ARG VAL GLY ASN ASN GLY ARG ALA THR SER PHE SEQRES 32 A 434 PHE ASP PRO GLU LYS ASP ARG ALA ILE ALA ALA ASP LEU SEQRES 33 A 434 VAL LYS ILE LEU GLU GLY SER GLY GLN THR VAL PRO ASP SEQRES 34 A 434 PHE LEU ARG THR CYS SEQRES 1 B 434 GLY PRO LEU GLY SER PRO GLU PHE PRO GLY GLU PHE TYR SEQRES 2 B 434 ILE PRO PRO GLU PRO SER ASN ASP ALA ILE GLU ILE PHE SEQRES 3 B 434 SER SER GLY ILE ALA SER GLY ILE HIS PHE SER LYS TYR SEQRES 4 B 434 ASN ASN ILE PRO VAL LYS VAL THR GLY SER ASP VAL PRO SEQRES 5 B 434 GLN PRO ILE GLN HIS PHE THR SER ALA ASP LEU ARG ASP SEQRES 6 B 434 ILE ILE ILE ASP ASN VAL ASN LYS SER GLY TYR LYS ILE SEQRES 7 B 434 PRO THR PRO ILE GLN LYS CYS SER ILE PRO VAL ILE SER SEQRES 8 B 434 SER GLY ARG ASP LEU MET ALA CYS ALA GLN THR GLY SER SEQRES 9 B 434 GLY LYS THR ALA ALA PHE LEU LEU PRO ILE LEU SER LYS SEQRES 10 B 434 LEU LEU GLU ASP PRO HIS GLU LEU GLU LEU GLY ARG PRO SEQRES 11 B 434 GLN VAL VAL ILE VAL SER PRO THR ARG GLU LEU ALA ILE SEQRES 12 B 434 GLN ILE PHE ASN GLU ALA ARG LYS PHE ALA PHE GLU SER SEQRES 13 B 434 TYR LEU LYS ILE GLY ILE VAL TYR GLY GLY THR SER PHE SEQRES 14 B 434 ARG HIS GLN ASN GLU CYS ILE THR ARG GLY CYS HIS VAL SEQRES 15 B 434 VAL ILE ALA THR PRO GLY ARG LEU LEU ASP PHE VAL ASP SEQRES 16 B 434 ARG THR PHE ILE THR PHE GLU ASP THR ARG PHE VAL VAL SEQRES 17 B 434 LEU ASP GLU ALA ASP ARG MET LEU ASP MET GLY PHE SER SEQRES 18 B 434 GLU ASP MET ARG ARG ILE MET THR HIS VAL THR MET ARG SEQRES 19 B 434 PRO GLU HIS GLN THR LEU MET PHE SER ALA THR PHE PRO SEQRES 20 B 434 GLU GLU ILE GLN ARG MET ALA GLY GLU PHE LEU LYS ASN SEQRES 21 B 434 TYR VAL PHE VAL ALA ILE GLY ILE VAL GLY GLY ALA CYS SEQRES 22 B 434 SER ASP VAL LYS GLN THR ILE TYR GLU VAL ASN LYS TYR SEQRES 23 B 434 ALA LYS ARG SER LYS LEU ILE GLU ILE LEU SER GLU GLN SEQRES 24 B 434 ALA ASP GLY THR ILE VAL PHE VAL GLU THR LYS ARG GLY SEQRES 25 B 434 ALA ASP PHE LEU ALA SER PHE LEU SER GLU LYS GLU PHE SEQRES 26 B 434 PRO THR THR SER ILE HIS GLY ASP ARG LEU GLN SER GLN SEQRES 27 B 434 ARG GLU GLN ALA LEU ARG ASP PHE LYS ASN GLY SER MET SEQRES 28 B 434 LYS VAL LEU ILE ALA THR SER VAL ALA SER ARG GLY LEU SEQRES 29 B 434 ASP ILE LYS ASN ILE LYS HIS VAL ILE ASN TYR ASP MET SEQRES 30 B 434 PRO SER LYS ILE ASP ASP TYR VAL HIS ARG ILE GLY ARG SEQRES 31 B 434 THR GLY ARG VAL GLY ASN ASN GLY ARG ALA THR SER PHE SEQRES 32 B 434 PHE ASP PRO GLU LYS ASP ARG ALA ILE ALA ALA ASP LEU SEQRES 33 B 434 VAL LYS ILE LEU GLU GLY SER GLY GLN THR VAL PRO ASP SEQRES 34 B 434 PHE LEU ARG THR CYS SEQRES 1 C 434 GLY PRO LEU GLY SER PRO GLU PHE PRO GLY GLU PHE TYR SEQRES 2 C 434 ILE PRO PRO GLU PRO SER ASN ASP ALA ILE GLU ILE PHE SEQRES 3 C 434 SER SER GLY ILE ALA SER GLY ILE HIS PHE SER LYS TYR SEQRES 4 C 434 ASN ASN ILE PRO VAL LYS VAL THR GLY SER ASP VAL PRO SEQRES 5 C 434 GLN PRO ILE GLN HIS PHE THR SER ALA ASP LEU ARG ASP SEQRES 6 C 434 ILE ILE ILE ASP ASN VAL ASN LYS SER GLY TYR LYS ILE SEQRES 7 C 434 PRO THR PRO ILE GLN LYS CYS SER ILE PRO VAL ILE SER SEQRES 8 C 434 SER GLY ARG ASP LEU MET ALA CYS ALA GLN THR GLY SER SEQRES 9 C 434 GLY LYS THR ALA ALA PHE LEU LEU PRO ILE LEU SER LYS SEQRES 10 C 434 LEU LEU GLU ASP PRO HIS GLU LEU GLU LEU GLY ARG PRO SEQRES 11 C 434 GLN VAL VAL ILE VAL SER PRO THR ARG GLU LEU ALA ILE SEQRES 12 C 434 GLN ILE PHE ASN GLU ALA ARG LYS PHE ALA PHE GLU SER SEQRES 13 C 434 TYR LEU LYS ILE GLY ILE VAL TYR GLY GLY THR SER PHE SEQRES 14 C 434 ARG HIS GLN ASN GLU CYS ILE THR ARG GLY CYS HIS VAL SEQRES 15 C 434 VAL ILE ALA THR PRO GLY ARG LEU LEU ASP PHE VAL ASP SEQRES 16 C 434 ARG THR PHE ILE THR PHE GLU ASP THR ARG PHE VAL VAL SEQRES 17 C 434 LEU ASP GLU ALA ASP ARG MET LEU ASP MET GLY PHE SER SEQRES 18 C 434 GLU ASP MET ARG ARG ILE MET THR HIS VAL THR MET ARG SEQRES 19 C 434 PRO GLU HIS GLN THR LEU MET PHE SER ALA THR PHE PRO SEQRES 20 C 434 GLU GLU ILE GLN ARG MET ALA GLY GLU PHE LEU LYS ASN SEQRES 21 C 434 TYR VAL PHE VAL ALA ILE GLY ILE VAL GLY GLY ALA CYS SEQRES 22 C 434 SER ASP VAL LYS GLN THR ILE TYR GLU VAL ASN LYS TYR SEQRES 23 C 434 ALA LYS ARG SER LYS LEU ILE GLU ILE LEU SER GLU GLN SEQRES 24 C 434 ALA ASP GLY THR ILE VAL PHE VAL GLU THR LYS ARG GLY SEQRES 25 C 434 ALA ASP PHE LEU ALA SER PHE LEU SER GLU LYS GLU PHE SEQRES 26 C 434 PRO THR THR SER ILE HIS GLY ASP ARG LEU GLN SER GLN SEQRES 27 C 434 ARG GLU GLN ALA LEU ARG ASP PHE LYS ASN GLY SER MET SEQRES 28 C 434 LYS VAL LEU ILE ALA THR SER VAL ALA SER ARG GLY LEU SEQRES 29 C 434 ASP ILE LYS ASN ILE LYS HIS VAL ILE ASN TYR ASP MET SEQRES 30 C 434 PRO SER LYS ILE ASP ASP TYR VAL HIS ARG ILE GLY ARG SEQRES 31 C 434 THR GLY ARG VAL GLY ASN ASN GLY ARG ALA THR SER PHE SEQRES 32 C 434 PHE ASP PRO GLU LYS ASP ARG ALA ILE ALA ALA ASP LEU SEQRES 33 C 434 VAL LYS ILE LEU GLU GLY SER GLY GLN THR VAL PRO ASP SEQRES 34 C 434 PHE LEU ARG THR CYS SEQRES 1 D 434 GLY PRO LEU GLY SER PRO GLU PHE PRO GLY GLU PHE TYR SEQRES 2 D 434 ILE PRO PRO GLU PRO SER ASN ASP ALA ILE GLU ILE PHE SEQRES 3 D 434 SER SER GLY ILE ALA SER GLY ILE HIS PHE SER LYS TYR SEQRES 4 D 434 ASN ASN ILE PRO VAL LYS VAL THR GLY SER ASP VAL PRO SEQRES 5 D 434 GLN PRO ILE GLN HIS PHE THR SER ALA ASP LEU ARG ASP SEQRES 6 D 434 ILE ILE ILE ASP ASN VAL ASN LYS SER GLY TYR LYS ILE SEQRES 7 D 434 PRO THR PRO ILE GLN LYS CYS SER ILE PRO VAL ILE SER SEQRES 8 D 434 SER GLY ARG ASP LEU MET ALA CYS ALA GLN THR GLY SER SEQRES 9 D 434 GLY LYS THR ALA ALA PHE LEU LEU PRO ILE LEU SER LYS SEQRES 10 D 434 LEU LEU GLU ASP PRO HIS GLU LEU GLU LEU GLY ARG PRO SEQRES 11 D 434 GLN VAL VAL ILE VAL SER PRO THR ARG GLU LEU ALA ILE SEQRES 12 D 434 GLN ILE PHE ASN GLU ALA ARG LYS PHE ALA PHE GLU SER SEQRES 13 D 434 TYR LEU LYS ILE GLY ILE VAL TYR GLY GLY THR SER PHE SEQRES 14 D 434 ARG HIS GLN ASN GLU CYS ILE THR ARG GLY CYS HIS VAL SEQRES 15 D 434 VAL ILE ALA THR PRO GLY ARG LEU LEU ASP PHE VAL ASP SEQRES 16 D 434 ARG THR PHE ILE THR PHE GLU ASP THR ARG PHE VAL VAL SEQRES 17 D 434 LEU ASP GLU ALA ASP ARG MET LEU ASP MET GLY PHE SER SEQRES 18 D 434 GLU ASP MET ARG ARG ILE MET THR HIS VAL THR MET ARG SEQRES 19 D 434 PRO GLU HIS GLN THR LEU MET PHE SER ALA THR PHE PRO SEQRES 20 D 434 GLU GLU ILE GLN ARG MET ALA GLY GLU PHE LEU LYS ASN SEQRES 21 D 434 TYR VAL PHE VAL ALA ILE GLY ILE VAL GLY GLY ALA CYS SEQRES 22 D 434 SER ASP VAL LYS GLN THR ILE TYR GLU VAL ASN LYS TYR SEQRES 23 D 434 ALA LYS ARG SER LYS LEU ILE GLU ILE LEU SER GLU GLN SEQRES 24 D 434 ALA ASP GLY THR ILE VAL PHE VAL GLU THR LYS ARG GLY SEQRES 25 D 434 ALA ASP PHE LEU ALA SER PHE LEU SER GLU LYS GLU PHE SEQRES 26 D 434 PRO THR THR SER ILE HIS GLY ASP ARG LEU GLN SER GLN SEQRES 27 D 434 ARG GLU GLN ALA LEU ARG ASP PHE LYS ASN GLY SER MET SEQRES 28 D 434 LYS VAL LEU ILE ALA THR SER VAL ALA SER ARG GLY LEU SEQRES 29 D 434 ASP ILE LYS ASN ILE LYS HIS VAL ILE ASN TYR ASP MET SEQRES 30 D 434 PRO SER LYS ILE ASP ASP TYR VAL HIS ARG ILE GLY ARG SEQRES 31 D 434 THR GLY ARG VAL GLY ASN ASN GLY ARG ALA THR SER PHE SEQRES 32 D 434 PHE ASP PRO GLU LYS ASP ARG ALA ILE ALA ALA ASP LEU SEQRES 33 D 434 VAL LYS ILE LEU GLU GLY SER GLY GLN THR VAL PRO ASP SEQRES 34 D 434 PHE LEU ARG THR CYS
HET MG A2801 1 HET MG B2802 1 HET MG C2803 1 HET MG D2804 1 HET ANP A2901 31 HET ANP B2902 31 HET ANP C2903 31 HET ANP D2904 31
HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
FORMUL 9 MG 4(MG 2+) FORMUL 13 ANP 4(C10 H17 N6 O12 P3) FORMUL 17 HOH *1319(H2 O)
HELIX 1 1 ASP A 210 PHE A 215 1 6 HELIX 2 2 HIS A 224 ILE A 231 5 8 HELIX 3 3 HIS A 246 ALA A 250 5 5 HELIX 4 4 ARG A 253 SER A 263 1 11 HELIX 5 5 THR A 269 SER A 281 1 13 HELIX 6 6 GLY A 294 ASP A 310 1 17 HELIX 7 7 THR A 327 ALA A 342 1 16 HELIX 8 8 SER A 357 THR A 366 1 10 HELIX 9 9 THR A 375 ARG A 385 1 11 HELIX 10 10 GLU A 400 LEU A 405 1 6 HELIX 11 11 PHE A 409 HIS A 419 1 11 HELIX 12 12 PRO A 436 GLU A 445 1 10 HELIX 13 13 ASN A 473 TYR A 475 5 3 HELIX 14 14 ALA A 476 GLN A 488 1 13 HELIX 15 15 THR A 498 LYS A 512 1 15 HELIX 16 16 LEU A 524 ASN A 537 1 14 HELIX 17 17 SER A 547 SER A 550 5 4 HELIX 18 18 LYS A 569 GLY A 578 1 10 HELIX 19 19 ASP A 598 ALA A 600 5 3 HELIX 20 20 ILE A 601 SER A 612 1 12 HELIX 21 21 PRO A 617 ARG A 621 5 5 HELIX 22 22 ASP B 210 PHE B 215 1 6 HELIX 23 23 HIS B 224 ILE B 231 5 8 HELIX 24 24 ARG B 253 SER B 263 1 11 HELIX 25 25 THR B 269 SER B 281 1 13 HELIX 26 26 GLY B 294 ASP B 310 1 17 HELIX 27 27 THR B 327 ALA B 342 1 16 HELIX 28 28 SER B 357 ARG B 367 1 11 HELIX 29 29 THR B 375 ARG B 385 1 11 HELIX 30 30 GLU B 400 LEU B 405 1 6 HELIX 31 31 ASP B 406 THR B 418 1 13 HELIX 32 32 PRO B 436 GLY B 444 1 9 HELIX 33 33 GLU B 445 LEU B 447 5 3 HELIX 34 34 ASN B 473 TYR B 475 5 3 HELIX 35 35 ALA B 476 GLN B 488 1 13 HELIX 36 36 THR B 498 GLU B 511 1 14 HELIX 37 37 LEU B 524 ASN B 537 1 14 HELIX 38 38 SER B 547 SER B 550 5 4 HELIX 39 39 LYS B 569 GLY B 578 1 10 HELIX 40 40 ASP B 598 ALA B 600 5 3 HELIX 41 41 ILE B 601 SER B 612 1 12 HELIX 42 42 PRO B 617 ARG B 621 5 5 HELIX 43 43 ASP C 210 PHE C 215 1 6 HELIX 44 44 HIS C 224 ILE C 231 5 8 HELIX 45 45 HIS C 246 ALA C 250 5 5 HELIX 46 46 ARG C 253 SER C 263 1 11 HELIX 47 47 THR C 269 SER C 281 1 13 HELIX 48 48 GLY C 294 ASP C 310 1 17 HELIX 49 49 THR C 327 ALA C 342 1 16 HELIX 50 50 SER C 357 ARG C 367 1 11 HELIX 51 51 THR C 375 ARG C 385 1 11 HELIX 52 52 GLU C 400 ASP C 406 1 7 HELIX 53 53 ASP C 406 THR C 418 1 13 HELIX 54 54 PRO C 436 GLY C 444 1 9 HELIX 55 55 GLU C 445 LEU C 447 5 3 HELIX 56 56 ASN C 473 TYR C 475 5 3 HELIX 57 57 ALA C 476 GLN C 488 1 13 HELIX 58 58 THR C 498 LYS C 512 1 15 HELIX 59 59 LEU C 524 ASN C 537 1 14 HELIX 60 60 SER C 547 SER C 550 5 4 HELIX 61 61 LYS C 569 GLY C 578 1 10 HELIX 62 62 ASP C 598 ALA C 600 5 3 HELIX 63 63 ILE C 601 SER C 612 1 12 HELIX 64 64 PRO C 617 ARG C 621 5 5 HELIX 65 65 ASP D 210 PHE D 215 1 6 HELIX 66 66 PHE D 225 ILE D 231 5 7 HELIX 67 67 ARG D 253 SER D 263 1 11 HELIX 68 68 THR D 269 SER D 281 1 13 HELIX 69 69 GLY D 294 ASP D 310 1 17 HELIX 70 70 THR D 327 ALA D 342 1 16 HELIX 71 71 SER D 357 ARG D 367 1 11 HELIX 72 72 THR D 375 ARG D 385 1 11 HELIX 73 73 GLU D 400 LEU D 405 1 6 HELIX 74 74 ASP D 406 THR D 418 1 13 HELIX 75 75 PRO D 436 GLY D 444 1 9 HELIX 76 76 GLU D 445 LEU D 447 5 3 HELIX 77 77 ASN D 473 TYR D 475 5 3 HELIX 78 78 ALA D 476 GLN D 488 1 13 HELIX 79 79 THR D 498 GLU D 511 1 14 HELIX 80 80 LEU D 524 ASN D 537 1 14 HELIX 81 81 SER D 547 SER D 550 5 4 HELIX 82 82 LYS D 569 GLY D 578 1 10 HELIX 83 83 ASP D 598 ALA D 600 5 3 HELIX 84 84 ILE D 601 SER D 612 1 12 HELIX 85 85 PRO D 617 ARG D 621 5 5
SHEET 1 A 8 VAL A 233 THR A 236 0 SHEET 2 A 8 VAL A 451 ILE A 455 -1 O PHE A 452 N THR A 236 SHEET 3 A 8 LEU A 285 CYS A 288 1 N CYS A 288 O VAL A 453 SHEET 4 A 8 GLN A 427 SER A 432 1 O MET A 430 N ALA A 287 SHEET 5 A 8 PHE A 395 ASP A 399 1 N LEU A 398 O LEU A 429 SHEET 6 A 8 VAL A 321 VAL A 324 1 N VAL A 324 O VAL A 397 SHEET 7 A 8 VAL A 371 ALA A 374 1 O VAL A 372 N VAL A 321 SHEET 8 A 8 ILE A 351 VAL A 352 1 N VAL A 352 O ILE A 373 SHEET 1 B 6 VAL A 465 GLU A 471 0 SHEET 2 B 6 GLY A 587 PHE A 593 1 O GLY A 587 N LYS A 466 SHEET 3 B 6 HIS A 560 ASN A 563 1 N ASN A 563 O PHE A 592 SHEET 4 B 6 THR A 492 PHE A 495 1 N PHE A 495 O ILE A 562 SHEET 5 B 6 VAL A 542 ALA A 545 1 O ALA A 545 N VAL A 494 SHEET 6 B 6 THR A 516 ILE A 519 1 N THR A 517 O ILE A 544 SHEET 1 C 8 VAL B 233 THR B 236 0 SHEET 2 C 8 VAL B 451 ILE B 455 -1 O ALA B 454 N LYS B 234 SHEET 3 C 8 LEU B 285 ALA B 289 1 N CYS B 288 O VAL B 453 SHEET 4 C 8 GLN B 427 SER B 432 1 O MET B 430 N ALA B 287 SHEET 5 C 8 PHE B 395 ASP B 399 1 N LEU B 398 O LEU B 429 SHEET 6 C 8 VAL B 321 VAL B 324 1 N VAL B 322 O VAL B 397 SHEET 7 C 8 VAL B 371 ALA B 374 1 O VAL B 372 N ILE B 323 SHEET 8 C 8 ILE B 349 VAL B 352 1 N GLY B 350 O VAL B 371 SHEET 1 D 6 VAL B 465 GLU B 471 0 SHEET 2 D 6 GLY B 587 PHE B 593 1 O PHE B 593 N TYR B 470 SHEET 3 D 6 HIS B 560 ASN B 563 1 N VAL B 561 O THR B 590 SHEET 4 D 6 THR B 492 PHE B 495 1 N PHE B 495 O ILE B 562 SHEET 5 D 6 VAL B 542 ALA B 545 1 O LEU B 543 N VAL B 494 SHEET 6 D 6 THR B 516 ILE B 519 1 N ILE B 519 O ILE B 544 SHEET 1 E 8 VAL C 233 THR C 236 0 SHEET 2 E 8 VAL C 451 ILE C 455 -1 O PHE C 452 N THR C 236 SHEET 3 E 8 LEU C 285 CYS C 288 1 N CYS C 288 O VAL C 453 SHEET 4 E 8 GLN C 427 SER C 432 1 O MET C 430 N ALA C 287 SHEET 5 E 8 PHE C 395 LEU C 398 1 N LEU C 398 O LEU C 429 SHEET 6 E 8 VAL C 321 VAL C 324 1 N VAL C 322 O VAL C 397 SHEET 7 E 8 VAL C 371 ALA C 374 1 O VAL C 372 N VAL C 321 SHEET 8 E 8 ILE C 349 VAL C 352 1 N GLY C 350 O VAL C 371 SHEET 1 F 6 VAL C 465 GLU C 471 0 SHEET 2 F 6 GLY C 587 PHE C 593 1 O PHE C 593 N TYR C 470 SHEET 3 F 6 HIS C 560 ASN C 563 1 N ASN C 563 O THR C 590 SHEET 4 F 6 THR C 492 PHE C 495 1 N PHE C 495 O ILE C 562 SHEET 5 F 6 VAL C 542 ALA C 545 1 O ALA C 545 N VAL C 494 SHEET 6 F 6 THR C 516 ILE C 519 1 N ILE C 519 O ILE C 544 SHEET 1 G 8 VAL D 233 THR D 236 0 SHEET 2 G 8 VAL D 451 ILE D 455 -1 O ALA D 454 N LYS D 234 SHEET 3 G 8 LEU D 285 CYS D 288 1 N CYS D 288 O ILE D 455 SHEET 4 G 8 GLN D 427 SER D 432 1 O MET D 430 N ALA D 287 SHEET 5 G 8 PHE D 395 ASP D 399 1 N VAL D 396 O LEU D 429 SHEET 6 G 8 VAL D 321 VAL D 324 1 N VAL D 322 O VAL D 397 SHEET 7 G 8 VAL D 371 ALA D 374 1 O ALA D 374 N ILE D 323 SHEET 8 G 8 ILE D 349 VAL D 352 1 N GLY D 350 O VAL D 371 SHEET 1 H 6 VAL D 465 GLU D 471 0 SHEET 2 H 6 GLY D 587 PHE D 593 1 O PHE D 593 N TYR D 470 SHEET 3 H 6 HIS D 560 ASN D 563 1 N VAL D 561 O THR D 590 SHEET 4 H 6 THR D 492 PHE D 495 1 N PHE D 495 O ILE D 562 SHEET 5 H 6 VAL D 542 ALA D 545 1 O LEU D 543 N VAL D 494 SHEET 6 H 6 THR D 516 ILE D 519 1 N THR D 517 O ILE D 544
LINK MG MG A2801 O HOH A2903 1555 1555 2.31 LINK MG MG A2801 O HOH A3008 1555 1555 2.38 LINK MG MG A2801 O HOH A3054 1555 1555 2.18 LINK MG MG A2801 O HOH A3105 1555 1555 2.13 LINK MG MG A2801 O3G ANP A2901 1555 1555 2.20 LINK MG MG A2801 O1B ANP A2901 1555 1555 2.37 LINK MG MG B2802 O HOH B3046 1555 1555 2.14 LINK MG MG B2802 O HOH B3118 1555 1555 2.25 LINK MG MG B2802 O3G ANP B2902 1555 1555 2.15 LINK MG MG B2802 O1B ANP B2902 1555 1555 2.31 LINK MG MG B2802 O HOH B2903 1555 1555 2.23 LINK MG MG B2802 O HOH B3044 1555 1555 2.28 LINK MG MG C2803 O1B ANP C2903 1555 1555 2.34 LINK MG MG C2803 O HOH C2904 1555 1555 2.24 LINK MG MG C2803 O HOH C2905 1555 1555 2.23 LINK MG MG C2803 O HOH C3178 1555 1555 2.24 LINK MG MG C2803 O HOH C3177 1555 1555 2.26 LINK MG MG C2803 O3G ANP C2903 1555 1555 2.12 LINK MG MG D2804 O1B ANP D2904 1555 1555 2.30 LINK MG MG D2804 O HOH D3034 1555 1555 2.29 LINK MG MG D2804 O HOH D3095 1555 1555 2.20 LINK MG MG D2804 O HOH D3096 1555 1555 2.24 LINK MG MG D2804 O HOH D2905 1555 1555 2.11 LINK MG MG D2804 O3G ANP D2904 1555 1555 2.20
SITE 1 AC1 6 ASP A 399 ANP A2901 HOH A2903 HOH A3008 SITE 2 AC1 6 HOH A3054 HOH A3105 SITE 1 AC2 6 ASP B 399 ANP B2902 HOH B2903 HOH B3044 SITE 2 AC2 6 HOH B3046 HOH B3118 SITE 1 AC3 6 ASP C 399 ANP C2903 HOH C2904 HOH C2905 SITE 2 AC3 6 HOH C3177 HOH C3178 SITE 1 AC4 6 ASP D 399 ANP D2904 HOH D2905 HOH D3034 SITE 2 AC4 6 HOH D3095 HOH D3096 SITE 1 AC5 27 GLY A 218 ILE A 219 PHE A 225 PHE A 247 SITE 2 AC5 27 TYR A 265 ILE A 267 GLN A 272 THR A 291 SITE 3 AC5 27 GLY A 292 SER A 293 GLY A 294 LYS A 295 SITE 4 AC5 27 THR A 296 GLU A 400 GLY A 552 ASP A 554 SITE 5 AC5 27 ARG A 579 ARG A 582 VAL A 583 MG A2801 SITE 6 AC5 27 HOH A2902 HOH A2903 HOH A2905 HOH A2910 SITE 7 AC5 27 HOH A2912 HOH A2934 HOH A3030 SITE 1 AC6 25 GLY B 218 ILE B 219 PHE B 247 TYR B 265 SITE 2 AC6 25 ILE B 267 GLN B 272 THR B 291 GLY B 292 SITE 3 AC6 25 SER B 293 GLY B 294 LYS B 295 THR B 296 SITE 4 AC6 25 GLU B 400 GLY B 552 ASP B 554 ARG B 579 SITE 5 AC6 25 ARG B 582 VAL B 583 MG B2802 HOH B2924 SITE 6 AC6 25 HOH B2935 HOH B2945 HOH B2948 HOH B2971 SITE 7 AC6 25 HOH B3044 SITE 1 AC7 29 GLY C 218 ILE C 219 TYR C 265 ILE C 267 SITE 2 AC7 29 THR C 269 GLN C 272 THR C 291 GLY C 292 SITE 3 AC7 29 SER C 293 GLY C 294 LYS C 295 THR C 296 SITE 4 AC7 29 GLU C 400 GLY C 552 ASP C 554 ARG C 579 SITE 5 AC7 29 ARG C 582 VAL C 583 MG C2803 HOH C2905 SITE 6 AC7 29 HOH C2906 HOH C2934 HOH C2937 HOH C2954 SITE 7 AC7 29 HOH C2958 HOH C2987 HOH C3018 HOH C3178 SITE 8 AC7 29 HOH C3296 SITE 1 AC8 23 ILE D 219 TYR D 265 ILE D 267 GLN D 272 SITE 2 AC8 23 THR D 291 GLY D 292 SER D 293 GLY D 294 SITE 3 AC8 23 LYS D 295 THR D 296 GLU D 400 GLY D 552 SITE 4 AC8 23 ASP D 554 ARG D 579 ARG D 582 VAL D 583 SITE 5 AC8 23 MG D2804 HOH D2906 HOH D2913 HOH D2919 SITE 6 AC8 23 HOH D2999 HOH D3034 HOH D3155
CRYST1 71.050 142.331 130.465 90.00 90.86 90.00 P 1 21 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014075 0.000000 0.000211 0.00000
SCALE2 0.000000 0.007026 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007666 0.00000