10 20 30 40 50 60 70 80 2DAV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN, CONTRACTILE PROTEIN 14-DEC-05 2DAV
TITLE SOLUTION STRUCTURE OF THE FIRST IG-LIKE DOMAIN OF MYOSIN- TITLE 2 BINDING PROTEIN C, SLOW-TYPE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-BINDING PROTEIN C, SLOW-TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG DOMAIN; COMPND 5 SYNONYM: SLOW MYBP-C; C-PROTEIN, SKELETAL MUSCLE SLOW- COMPND 6 ISOFORM; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYBPC1, MYBPCS; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050302-60; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS IG DOMAIN, MYOSIN-BINDING PROTEIN C, SLOW-TYPE, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL PROTEIN, KEYWDS 5 CONTRACTILE PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DAV 1 VERSN REVDAT 1 14-JUN-06 2DAV 0
JRNL AUTH X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST IG-LIKE DOMAIN OF JRNL TITL 2 MYOSIN-BINDING PROTEIN C, SLOW-TYPE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DAV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025196.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.32MM 13C,15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 52.23 -96.14 REMARK 500 1 PHE A 10 83.77 -59.76 REMARK 500 1 ILE A 11 -75.84 -33.28 REMARK 500 1 PRO A 14 94.72 -69.74 REMARK 500 1 LYS A 58 -75.53 -129.33 REMARK 500 1 ASP A 98 -74.16 -58.53 REMARK 500 1 THR A 116 146.15 -35.57 REMARK 500 2 PHE A 10 101.93 -37.04 REMARK 500 2 ILE A 11 -75.28 -71.84 REMARK 500 2 PRO A 14 85.06 -69.75 REMARK 500 2 GLN A 15 107.44 -56.33 REMARK 500 2 ALA A 56 109.57 -55.79 REMARK 500 2 LYS A 58 -52.55 -121.16 REMARK 500 2 ASP A 98 -70.64 -66.16 REMARK 500 2 ASN A 118 161.31 -49.16 REMARK 500 3 ASP A 98 -74.33 -63.48 REMARK 500 4 PHE A 10 76.05 -66.54 REMARK 500 4 ILE A 11 -76.07 -45.45 REMARK 500 4 PRO A 14 82.71 -69.71 REMARK 500 4 GLU A 34 -48.43 -132.23 REMARK 500 4 LYS A 58 -63.08 -132.20 REMARK 500 4 LYS A 97 -74.75 -27.82 REMARK 500 5 SER A 3 81.60 -66.51 REMARK 500 5 ILE A 8 118.74 -166.50 REMARK 500 5 PHE A 10 84.71 -54.26 REMARK 500 5 GLU A 34 -43.88 -133.81 REMARK 500 5 LYS A 58 -63.68 -123.07 REMARK 500 5 ASP A 98 -72.54 -64.69 REMARK 500 5 SER A 121 166.13 -46.67 REMARK 500 6 ILE A 11 -75.07 -41.84 REMARK 500 6 PRO A 14 83.11 -69.78 REMARK 500 6 ASP A 98 -73.43 -63.60 REMARK 500 7 PHE A 10 76.13 -62.19 REMARK 500 7 LYS A 48 -60.25 -102.91 REMARK 500 7 LYS A 58 -58.24 -129.86 REMARK 500 7 ASP A 98 -70.19 -65.02 REMARK 500 7 PRO A 123 -179.72 -69.77 REMARK 500 8 SER A 5 178.84 -50.12 REMARK 500 8 ILE A 11 -75.06 -33.97 REMARK 500 8 GLN A 15 39.25 -82.12 REMARK 500 8 ALA A 82 105.67 -54.09 REMARK 500 8 LYS A 97 -71.95 -33.30 REMARK 500 8 PRO A 117 -176.63 -69.78 REMARK 500 8 SER A 125 45.15 39.69 REMARK 500 9 PRO A 14 97.64 -69.78 REMARK 500 9 LYS A 58 -72.07 -129.06 REMARK 500 9 ASP A 98 -70.80 -72.07 REMARK 500 9 PRO A 123 -177.09 -69.74 REMARK 500 10 LEU A 9 75.68 -112.88 REMARK 500 10 ILE A 11 -75.07 -61.72 REMARK 500 10 PRO A 14 82.70 -69.74 REMARK 500 10 LYS A 58 -72.29 -100.94 REMARK 500 10 ALA A 82 106.69 -51.12 REMARK 500 10 LYS A 97 -74.09 -32.83 REMARK 500 10 ASN A 118 153.84 -49.26 REMARK 500 10 ASP A 120 105.95 -48.07 REMARK 500 11 PHE A 10 89.29 -52.78 REMARK 500 11 PRO A 14 97.43 -69.79 REMARK 500 11 ALA A 56 109.13 -54.36 REMARK 500 11 LYS A 58 -58.40 -126.11 REMARK 500 11 ASP A 98 -72.60 -63.84 REMARK 500 12 PHE A 10 79.71 -60.12 REMARK 500 12 LYS A 58 -50.32 -131.05 REMARK 500 12 ASP A 98 -70.94 -62.87 REMARK 500 12 PRO A 117 96.37 -69.73 REMARK 500 13 SER A 6 149.69 -173.63 REMARK 500 13 ALA A 56 107.80 -54.38 REMARK 500 13 LYS A 58 -56.08 -126.16 REMARK 500 13 TYR A 96 -73.67 -116.99 REMARK 500 13 LYS A 97 -76.94 -120.27 REMARK 500 14 ILE A 8 -52.58 -127.54 REMARK 500 14 ILE A 11 -72.04 -41.28 REMARK 500 14 GLN A 15 38.72 -83.71 REMARK 500 14 LYS A 97 -71.20 -63.03 REMARK 500 14 ASP A 98 -75.29 -40.13 REMARK 500 14 SER A 121 146.68 -37.60 REMARK 500 15 PRO A 14 85.97 -69.79 REMARK 500 15 ALA A 56 109.72 -59.30 REMARK 500 15 LYS A 97 -75.71 -30.60 REMARK 500 15 ASN A 118 162.70 -45.23 REMARK 500 15 PRO A 123 2.28 -69.78 REMARK 500 16 ILE A 8 -52.10 -130.50 REMARK 500 16 PHE A 10 91.06 -41.86 REMARK 500 16 GLN A 15 30.31 -90.57 REMARK 500 16 LYS A 58 -54.65 -120.26 REMARK 500 16 ALA A 82 109.87 -53.17 REMARK 500 16 ASP A 98 -70.75 -69.94 REMARK 500 16 SER A 121 161.84 -49.84 REMARK 500 17 PHE A 10 50.83 72.52 REMARK 500 17 ALA A 56 108.19 -54.15 REMARK 500 17 LYS A 58 -60.98 -133.04 REMARK 500 17 ALA A 82 101.98 -51.57 REMARK 500 17 TYR A 96 -76.17 -78.55 REMARK 500 17 LYS A 97 -76.07 -135.04 REMARK 500 17 ASP A 120 50.46 33.73 REMARK 500 18 SER A 2 -61.36 -120.87 REMARK 500 18 PHE A 10 106.64 -51.76 REMARK 500 18 ILE A 11 -74.82 -57.06 REMARK 500 18 LYS A 58 -60.28 -124.22 REMARK 500 18 ASP A 98 -71.50 -66.55 REMARK 500 19 LEU A 9 -175.44 -64.88 REMARK 500 19 PHE A 10 53.87 36.01 REMARK 500 19 GLN A 15 43.94 -80.68 REMARK 500 19 LYS A 58 -50.81 -125.92 REMARK 500 19 ASP A 98 -72.72 -62.39 REMARK 500 20 SER A 2 114.52 -167.37 REMARK 500 20 GLN A 15 35.02 -86.25 REMARK 500 20 LYS A 58 -56.63 -128.99 REMARK 500 20 ALA A 82 108.98 -52.30 REMARK 500 20 LYS A 97 -74.51 -28.87 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000567.2 RELATED DB: TARGETDB
DBREF 2DAV A 8 120 UNP Q00872 MYPC1_HUMAN 58 170
SEQADV 2DAV GLY A 1 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV SER A 2 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV SER A 3 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV GLY A 4 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV SER A 5 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV SER A 6 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV GLY A 7 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV SER A 121 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV GLY A 122 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV PRO A 123 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV SER A 124 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV SER A 125 UNP Q00872 CLONING ARTIFACT SEQADV 2DAV GLY A 126 UNP Q00872 CLONING ARTIFACT
SEQRES 1 A 126 GLY SER SER GLY SER SER GLY ILE LEU PHE ILE GLU LYS SEQRES 2 A 126 PRO GLN GLY GLY THR VAL LYS VAL GLY GLU ASP ILE THR SEQRES 3 A 126 PHE ILE ALA LYS VAL LYS ALA GLU ASP LEU LEU ARG LYS SEQRES 4 A 126 PRO THR ILE LYS TRP PHE LYS GLY LYS TRP MET ASP LEU SEQRES 5 A 126 ALA SER LYS ALA GLY LYS HIS LEU GLN LEU LYS GLU THR SEQRES 6 A 126 PHE GLU ARG HIS SER ARG VAL TYR THR PHE GLU MET GLN SEQRES 7 A 126 ILE ILE LYS ALA LYS ASP ASN PHE ALA GLY ASN TYR ARG SEQRES 8 A 126 CYS GLU VAL THR TYR LYS ASP LYS PHE ASP SER CYS SER SEQRES 9 A 126 PHE ASP LEU GLU VAL HIS GLU SER THR GLY THR THR PRO SEQRES 10 A 126 ASN ILE ASP SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 51 ALA A 56 1 6
SHEET 1 A 4 THR A 18 LYS A 20 0 SHEET 2 A 4 ASP A 106 HIS A 110 1 O GLU A 108 N VAL A 19 SHEET 3 A 4 GLY A 88 THR A 95 -1 N GLY A 88 O LEU A 107 SHEET 4 A 4 THR A 41 LYS A 46 -1 N PHE A 45 O ARG A 91 SHEET 1 B 4 THR A 18 LYS A 20 0 SHEET 2 B 4 ASP A 106 HIS A 110 1 O GLU A 108 N VAL A 19 SHEET 3 B 4 GLY A 88 THR A 95 -1 N GLY A 88 O LEU A 107 SHEET 4 B 4 PHE A 100 CYS A 103 -1 O ASP A 101 N VAL A 94 SHEET 1 C 3 ILE A 25 LYS A 32 0 SHEET 2 C 3 VAL A 72 ILE A 79 -1 O PHE A 75 N ALA A 29 SHEET 3 C 3 LEU A 60 GLU A 67 -1 N THR A 65 O THR A 74
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000