10 20 30 40 50 60 70 80 2DAP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 23-DEC-97 2DAP
TITLE C. GLUTAMICUM DAP DEHYDROGENASE IN COMPLEX WITH DAP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIAMINOPIMELIC ACID DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DAPDH; COMPND 5 EC: 1.4.1.16
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 1718; SOURCE 4 ATCC: 13032; SOURCE 5 PLASMID: PET23A
KEYWDS OXIDOREDUCTASE, DEHYDROGENASE, D-AMINO ACID DEHYDROGENASE, LYSINE KEYWDS 2 BIOSYNTHESIS, DIAMINOPIMELATE
EXPDTA X-RAY DIFFRACTION
AUTHOR G.SCAPIN,M.CIRILLI,S.G.REDDY,Y.GAO,J.C.VEDERAS,J.S.BLANCHARD
REVDAT 3 13-JUL-11 2DAP 1 VERSN REVDAT 2 24-FEB-09 2DAP 1 VERSN REVDAT 1 08-APR-98 2DAP 0
JRNL AUTH G.SCAPIN,M.CIRILLI,S.G.REDDY,Y.GAO,J.C.VEDERAS,J.S.BLANCHARD JRNL TITL SUBSTRATE AND INHIBITOR BINDING SITES IN CORYNEBACTERIUM JRNL TITL 2 GLUTAMICUM DIAMINOPIMELATE DEHYDROGENASE. JRNL REF BIOCHEMISTRY V. 37 3278 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9521647 JRNL DOI 10.1021/BI9727949
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.SCAPIN,S.G.REDDY,J.S.BLANCHARD REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF MESO-DIAMINOPIMELIC ACID REMARK 1 TITL 2 DEHYDROGENASE FROM CORYNEBACTERIUM GLUTAMICUM REMARK 1 REF BIOCHEMISTRY V. 35 13540 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.G.REDDY,G.SCAPIN,J.S.BLANCHARD REMARK 1 TITL EXPRESSION, PURIFICATION, AND CRYSTALLIZATION OF REMARK 1 TITL 2 MESO-DIAMINOPIMELATE DEHYDROGENASE FROM CORYNEBACTERIUM REMARK 1 TITL 3 GLUTAMICUM REMARK 1 REF PROTEINS V. 25 514 1996 REMARK 1 REFN ISSN 0887-3585
REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 21456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2069 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1854 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 211 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2445 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.27 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : DAP.PAR REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : DAP.PRO REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JAN-96 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTERS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : XENGEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21456 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 1DAP REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-17% PEG 8000 IN 100 MM NA- REMARK 280 CACODYLATE, PH 6.5, 150-300 MM MG-ACETATE CRYSTAL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.36000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1049 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 933 LIES ON A SPECIAL POSITION.
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 THR A 2 OG1 CG2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 GLU A 207 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1027 O HOH A 1027 3565 0.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 41.37 -85.25 REMARK 500 TYR A 11 50.92 -147.50 REMARK 500 ASP A 41 56.20 -69.19 REMARK 500 ALA A 56 -6.15 -53.46 REMARK 500 SER A 68 -128.03 58.74 REMARK 500 ALA A 69 31.98 -91.60 REMARK 500 THR A 70 -72.39 -149.49 REMARK 500 ASP A 120 98.00 -161.88 REMARK 500 ASP A 218 -57.98 71.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 154 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: DAP REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: DIAMINOPIMELATE BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE API A 902
DBREF 2DAP A 1 320 UNP P04964 DDH_CORGL 1 320
SEQRES 1 A 320 MET THR ASN ILE ARG VAL ALA ILE VAL GLY TYR GLY ASN SEQRES 2 A 320 LEU GLY ARG SER VAL GLU LYS LEU ILE ALA LYS GLN PRO SEQRES 3 A 320 ASP MET ASP LEU VAL GLY ILE PHE SER ARG ARG ALA THR SEQRES 4 A 320 LEU ASP THR LYS THR PRO VAL PHE ASP VAL ALA ASP VAL SEQRES 5 A 320 ASP LYS HIS ALA ASP ASP VAL ASP VAL LEU PHE LEU CYS SEQRES 6 A 320 MET GLY SER ALA THR ASP ILE PRO GLU GLN ALA PRO LYS SEQRES 7 A 320 PHE ALA GLN PHE ALA CYS THR VAL ASP THR TYR ASP ASN SEQRES 8 A 320 HIS ARG ASP ILE PRO ARG HIS ARG GLN VAL MET ASN GLU SEQRES 9 A 320 ALA ALA THR ALA ALA GLY ASN VAL ALA LEU VAL SER THR SEQRES 10 A 320 GLY TRP ASP PRO GLY MET PHE SER ILE ASN ARG VAL TYR SEQRES 11 A 320 ALA ALA ALA VAL LEU ALA GLU HIS GLN GLN HIS THR PHE SEQRES 12 A 320 TRP GLY PRO GLY LEU SER GLN GLY HIS SER ASP ALA LEU SEQRES 13 A 320 ARG ARG ILE PRO GLY VAL GLN LYS ALA VAL GLN TYR THR SEQRES 14 A 320 LEU PRO SER GLU ASP ALA LEU GLU LYS ALA ARG ARG GLY SEQRES 15 A 320 GLU ALA GLY ASP LEU THR GLY LYS GLN THR HIS LYS ARG SEQRES 16 A 320 GLN CYS PHE VAL VAL ALA ASP ALA ALA ASP HIS GLU ARG SEQRES 17 A 320 ILE GLU ASN ASP ILE ARG THR MET PRO ASP TYR PHE VAL SEQRES 18 A 320 GLY TYR GLU VAL GLU VAL ASN PHE ILE ASP GLU ALA THR SEQRES 19 A 320 PHE ASP SER GLU HIS THR GLY MET PRO HIS GLY GLY HIS SEQRES 20 A 320 VAL ILE THR THR GLY ASP THR GLY GLY PHE ASN HIS THR SEQRES 21 A 320 VAL GLU TYR ILE LEU LYS LEU ASP ARG ASN PRO ASP PHE SEQRES 22 A 320 THR ALA SER SER GLN ILE ALA PHE GLY ARG ALA ALA HIS SEQRES 23 A 320 ARG MET LYS GLN GLN GLY GLN SER GLY ALA PHE THR VAL SEQRES 24 A 320 LEU GLU VAL ALA PRO TYR LEU LEU SER PRO GLU ASN LEU SEQRES 25 A 320 ASP ASP LEU ILE ALA ARG ASP VAL
HET API A 902 13
HETNAM API 2,6-DIAMINOPIMELIC ACID
FORMUL 2 API C7 H14 N2 O4 FORMUL 3 HOH *150(H2 O)
HELIX 1 1 ASN A 13 LYS A 24 1 12 HELIX 2 2 VAL A 49 HIS A 55 5 7 HELIX 3 3 ASP A 71 ALA A 80 1 10 HELIX 4 4 ILE A 95 ALA A 109 1 15 HELIX 5 5 MET A 123 VAL A 134 1 12 HELIX 6 6 GLN A 150 ARG A 158 1 9 HELIX 7 7 GLU A 173 ARG A 181 1 9 HELIX 8 8 HIS A 206 ARG A 214 1 9 HELIX 9 9 GLU A 232 GLU A 238 1 7 HELIX 10 10 ASN A 270 GLN A 290 1 21 HELIX 11 11 VAL A 299 GLU A 301 5 3 HELIX 12 12 PRO A 304 LEU A 307 5 4 HELIX 13 13 LEU A 312 ARG A 318 1 7
SHEET 1 A 5 CYS A 84 ASP A 87 0 SHEET 2 A 5 VAL A 61 LEU A 64 1 N LEU A 62 O CYS A 84 SHEET 3 A 5 ILE A 4 VAL A 9 1 N ALA A 7 O VAL A 61 SHEET 4 A 5 MET A 28 SER A 35 1 N ASP A 29 O ILE A 4 SHEET 5 A 5 VAL A 46 ASP A 48 1 N PHE A 47 O ILE A 33 SHEET 1 B 2 VAL A 112 LEU A 114 0 SHEET 2 B 2 GLY A 295 PHE A 297 1 N GLY A 295 O ALA A 113 SHEET 1 C 3 HIS A 138 TRP A 144 0 SHEET 2 C 3 HIS A 244 ASP A 253 -1 N THR A 251 O GLN A 139 SHEET 3 C 3 ASN A 258 LEU A 267 -1 N LEU A 267 O HIS A 244 SHEET 1 D 3 LYS A 164 PRO A 171 0 SHEET 2 D 3 HIS A 193 VAL A 200 -1 N VAL A 200 O LYS A 164 SHEET 3 D 3 GLU A 224 PHE A 229 1 N GLU A 224 O ARG A 195
CISPEP 1 ASP A 120 PRO A 121 0 0.28 CISPEP 2 GLY A 145 PRO A 146 0 0.16
SITE 1 DAP 7 ASP A 90 ASP A 120 GLN A 150 GLY A 151 SITE 2 DAP 7 THR A 169 ARG A 195 HIS A 244 SITE 1 AC1 16 ASP A 90 TRP A 119 ASP A 120 TRP A 144 SITE 2 AC1 16 SER A 149 GLN A 150 GLY A 151 THR A 169 SITE 3 AC1 16 ARG A 195 HIS A 244 ASN A 270 HOH A 918 SITE 4 AC1 16 HOH A 956 HOH A 962 HOH A 975 HOH A 976
CRYST1 121.640 121.640 52.360 90.00 90.00 120.00 P 3 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008221 0.004746 0.000000 0.00000
SCALE2 0.000000 0.009493 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019099 0.00000