10 20 30 40 50 60 70 80 2DAH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-DEC-05 2DAH
TITLE SOLUTION STRUCTURE OF THE C-TERMINAL UBA DOMAIN IN THE TITLE 2 HUMAN UBIQUILIN 3
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUILIN-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBQLN3; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050613-28; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS UBIQUILIN-3, UBA DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ZHAO,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DAH 1 VERSN REVDAT 1 14-JUN-06 2DAH 0
JRNL AUTH C.ZHAO,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL UBA DOMAIN IN JRNL TITL 2 THE HUMAN UBIQUILIN 3 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.8 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DAH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025184.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.80MM UBA DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL (PH 7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 1.0.8 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 96.10 57.54 REMARK 500 1 SER A 5 163.31 -48.47 REMARK 500 1 HIS A 8 -76.62 -76.36 REMARK 500 1 PHE A 9 63.66 -106.57 REMARK 500 1 GLN A 10 -74.41 -81.41 REMARK 500 1 ASN A 23 51.22 -141.37 REMARK 500 1 SER A 49 103.05 -53.01 REMARK 500 1 SER A 52 80.98 66.23 REMARK 500 2 SER A 6 -59.34 -135.23 REMARK 500 2 HIS A 8 -168.73 -103.58 REMARK 500 2 PHE A 9 70.75 45.73 REMARK 500 2 GLN A 10 -70.57 -93.39 REMARK 500 2 LEU A 22 48.30 -86.87 REMARK 500 2 SER A 49 98.86 -167.06 REMARK 500 2 SER A 53 82.79 46.92 REMARK 500 3 HIS A 8 -168.73 -116.42 REMARK 500 3 PHE A 9 70.29 45.04 REMARK 500 3 GLN A 10 -72.33 -93.20 REMARK 500 3 LEU A 22 31.45 -92.80 REMARK 500 3 LEU A 28 -70.99 -57.50 REMARK 500 3 SER A 49 -57.41 -171.03 REMARK 500 3 SER A 53 -59.16 72.11 REMARK 500 4 SER A 5 78.66 43.06 REMARK 500 4 SER A 6 -58.81 -161.91 REMARK 500 4 HIS A 8 -173.42 -54.10 REMARK 500 4 GLN A 10 -72.68 -87.18 REMARK 500 4 LEU A 28 -70.84 -52.42 REMARK 500 4 THR A 34 35.56 -91.84 REMARK 500 4 VAL A 38 -60.87 -90.91 REMARK 500 4 SER A 53 -58.80 -165.22 REMARK 500 5 SER A 5 -59.64 -128.09 REMARK 500 5 SER A 6 88.49 45.63 REMARK 500 5 GLN A 10 -72.76 -87.78 REMARK 500 5 LEU A 22 40.94 -93.50 REMARK 500 5 LEU A 28 -70.79 -53.82 REMARK 500 5 SER A 52 -62.91 -101.57 REMARK 500 6 SER A 6 -60.07 -174.42 REMARK 500 6 HIS A 8 -81.93 -143.93 REMARK 500 6 PHE A 9 66.57 -100.98 REMARK 500 6 GLN A 10 -72.70 -84.85 REMARK 500 6 ARG A 17 -39.47 -39.91 REMARK 500 6 ASN A 23 52.67 -145.48 REMARK 500 6 SER A 49 -58.83 -168.70 REMARK 500 6 SER A 52 154.85 -47.65 REMARK 500 7 SER A 6 115.08 60.22 REMARK 500 7 HIS A 8 -79.89 -58.92 REMARK 500 7 PHE A 9 65.37 -100.13 REMARK 500 7 GLN A 10 -72.48 -84.91 REMARK 500 7 ASN A 23 57.04 -141.95 REMARK 500 7 LEU A 28 -70.62 -58.80 REMARK 500 8 SER A 3 83.73 53.12 REMARK 500 8 SER A 5 169.45 55.32 REMARK 500 8 PHE A 9 50.62 37.68 REMARK 500 8 GLN A 10 -71.90 -79.12 REMARK 500 8 LEU A 22 48.54 -86.41 REMARK 500 8 ASN A 23 58.31 -141.93 REMARK 500 8 SER A 52 100.21 56.46 REMARK 500 9 HIS A 8 -81.11 -131.25 REMARK 500 9 PHE A 9 66.00 -101.99 REMARK 500 9 GLN A 10 -72.57 -87.44 REMARK 500 9 THR A 34 38.10 -90.15 REMARK 500 9 SER A 49 84.09 -175.95 REMARK 500 9 SER A 52 115.99 61.70 REMARK 500 9 SER A 53 79.26 -113.95 REMARK 500 10 SER A 2 112.68 -173.90 REMARK 500 10 HIS A 8 -83.12 -130.18 REMARK 500 10 GLN A 10 -73.60 -86.54 REMARK 500 10 SER A 49 81.57 44.80 REMARK 500 10 SER A 53 103.44 -179.36 REMARK 500 11 SER A 6 82.52 48.87 REMARK 500 11 HIS A 8 -75.13 -115.51 REMARK 500 11 PHE A 9 62.90 -101.10 REMARK 500 11 GLN A 10 -74.05 -87.79 REMARK 500 11 LEU A 22 46.70 -88.27 REMARK 500 11 LEU A 28 -70.18 -64.41 REMARK 500 11 SER A 53 114.74 59.09 REMARK 500 12 SER A 6 77.71 40.77 REMARK 500 12 HIS A 8 -73.42 -87.19 REMARK 500 12 PHE A 9 58.10 -113.96 REMARK 500 12 GLN A 10 -71.05 -76.86 REMARK 500 12 LEU A 22 32.39 -92.71 REMARK 500 12 ASN A 23 78.12 -119.76 REMARK 500 12 SER A 52 80.29 53.69 REMARK 500 13 SER A 2 135.67 63.38 REMARK 500 13 SER A 3 88.66 64.85 REMARK 500 13 HIS A 8 -83.04 -140.83 REMARK 500 13 GLU A 14 -70.36 -45.21 REMARK 500 13 SER A 52 160.19 179.14 REMARK 500 13 SER A 53 94.43 -178.72 REMARK 500 14 SER A 2 119.98 60.61 REMARK 500 14 SER A 5 132.01 63.28 REMARK 500 14 HIS A 8 -80.73 -80.19 REMARK 500 14 GLN A 10 -73.79 -85.27 REMARK 500 14 PHE A 21 75.35 -100.04 REMARK 500 14 LEU A 22 49.94 -87.24 REMARK 500 14 LEU A 28 -71.22 -56.20 REMARK 500 15 HIS A 8 -78.86 72.13 REMARK 500 15 GLN A 10 -71.90 -83.12 REMARK 500 16 HIS A 8 -74.60 -133.35 REMARK 500 16 PHE A 9 61.34 -110.04 REMARK 500 16 GLN A 10 -73.34 -81.61 REMARK 500 16 LEU A 22 49.71 -86.33 REMARK 500 16 SER A 53 88.98 39.54 REMARK 500 17 SER A 5 105.01 -47.57 REMARK 500 17 PHE A 9 51.11 37.53 REMARK 500 17 GLN A 10 -73.44 -77.08 REMARK 500 17 LEU A 28 -70.79 -53.87 REMARK 500 17 THR A 34 38.43 -92.37 REMARK 500 17 VAL A 38 -65.96 -90.08 REMARK 500 17 SER A 49 118.19 -169.05 REMARK 500 17 SER A 52 110.45 64.14 REMARK 500 17 SER A 53 -58.75 -150.23 REMARK 500 18 SER A 3 109.71 62.29 REMARK 500 18 SER A 5 142.66 63.02 REMARK 500 18 SER A 6 -64.18 -128.12 REMARK 500 18 PHE A 9 51.12 37.58 REMARK 500 18 GLN A 10 -72.53 -75.36 REMARK 500 18 LEU A 28 -70.10 -52.25 REMARK 500 18 SER A 52 -54.60 -142.72 REMARK 500 18 SER A 53 -67.91 67.97 REMARK 500 19 SER A 2 85.41 39.92 REMARK 500 19 PHE A 9 51.23 37.47 REMARK 500 19 LEU A 22 47.10 -88.33 REMARK 500 19 LEU A 28 -71.18 -51.53 REMARK 500 19 THR A 34 38.09 -89.93 REMARK 500 19 SER A 53 -70.54 69.34 REMARK 500 20 SER A 3 83.68 -165.31 REMARK 500 20 HIS A 8 -81.13 -56.11 REMARK 500 20 PHE A 9 57.58 -110.23 REMARK 500 20 GLN A 10 -72.39 -81.06 REMARK 500 20 SER A 53 99.62 -62.52 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSG002000983.1 RELATED DB: TARGETDB
DBREF 2DAH A 8 48 UNP Q9H347 UBQL3_HUMAN 615 655
SEQADV 2DAH GLY A 1 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH SER A 2 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH SER A 3 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH GLY A 4 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH SER A 5 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH SER A 6 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH GLY A 7 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH SER A 49 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH GLY A 50 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH PRO A 51 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH SER A 52 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH SER A 53 UNP Q9H347 CLONING ARTIFACT SEQADV 2DAH GLY A 54 UNP Q9H347 CLONING ARTIFACT
SEQRES 1 A 54 GLY SER SER GLY SER SER GLY HIS PHE GLN VAL GLN LEU SEQRES 2 A 54 GLU GLN LEU ARG SER MET GLY PHE LEU ASN ARG GLU ALA SEQRES 3 A 54 ASN LEU GLN ALA LEU ILE ALA THR GLY GLY ASP VAL ASP SEQRES 4 A 54 ALA ALA VAL GLU LYS LEU ARG GLN SER SER GLY PRO SER SEQRES 5 A 54 SER GLY
HELIX 1 1 PHE A 9 GLY A 20 1 12 HELIX 2 2 ASN A 23 GLY A 35 1 13 HELIX 3 3 ASP A 37 SER A 49 1 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000