10 20 30 40 50 60 70 80 2DAG - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 14-DEC-05 2DAG
TITLE SOLUTION STRUCTURE OF THE FIRST UBA DOMAIN IN THE HUMAN TITLE 2 UBIQUITIN SPECIFIC PROTEASE 5 (ISOPEPTIDASE 5)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA DOMAIN; COMPND 5 SYNONYM: UBIQUITIN THIOLESTERASE 5, UBIQUITIN-SPECIFIC COMPND 6 PROCESSING PROTEASE 5, DEUBIQUITINATING ENZYME 5, COMPND 7 ISOPEPTIDASE T; COMPND 8 EC: 3.1.2.15; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP5; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050613-08; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ISOPEPTIDASE T, UBIQUITIN SPECIFIC PROTEASE 5 (USP 5), UBA KEYWDS 2 DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ZHAO,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DAG 1 VERSN REVDAT 1 14-JUN-06 2DAG 0
JRNL AUTH C.ZHAO,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST UBA DOMAIN IN THE JRNL TITL 2 HUMAN UBIQUITIN SPECIFIC PROTEASE 5 (ISOPEPTIDASE JRNL TITL 3 5) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.8 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DAG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025183.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.05MM UBA DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 1.0.8 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 92.81 -59.74 REMARK 500 1 SER A 5 -61.93 69.97 REMARK 500 1 SER A 6 157.23 64.68 REMARK 500 1 LEU A 8 167.94 55.70 REMARK 500 1 TYR A 31 -70.89 -48.33 REMARK 500 1 ASN A 35 98.20 50.86 REMARK 500 1 SER A 36 46.96 -148.39 REMARK 500 1 ASN A 56 155.96 -40.55 REMARK 500 1 SER A 69 -60.97 -129.22 REMARK 500 2 SER A 3 138.78 -173.33 REMARK 500 2 TYR A 31 -71.05 -50.99 REMARK 500 2 ASN A 35 94.39 47.52 REMARK 500 2 SER A 36 54.79 -143.79 REMARK 500 2 ASP A 50 44.31 -88.85 REMARK 500 2 ILE A 59 109.61 58.18 REMARK 500 2 SER A 63 85.30 -154.53 REMARK 500 2 SER A 64 95.01 -65.12 REMARK 500 2 SER A 68 -61.52 -156.84 REMARK 500 2 SER A 69 153.25 -49.06 REMARK 500 2 SER A 72 80.80 -177.68 REMARK 500 2 SER A 73 88.95 62.15 REMARK 500 3 ALA A 29 -70.16 -54.16 REMARK 500 3 HIS A 48 -62.49 -91.95 REMARK 500 3 ASN A 56 157.36 -40.52 REMARK 500 3 SER A 63 -61.69 -150.47 REMARK 500 3 SER A 68 162.31 60.13 REMARK 500 4 SER A 2 119.52 -174.40 REMARK 500 4 SER A 3 -60.95 71.30 REMARK 500 4 SER A 5 -62.57 -103.79 REMARK 500 4 SER A 6 91.45 51.85 REMARK 500 4 ASN A 35 85.59 40.24 REMARK 500 4 MET A 46 -30.67 -37.94 REMARK 500 4 ASP A 50 42.43 -90.71 REMARK 500 4 ASN A 56 157.33 -40.97 REMARK 500 4 PRO A 57 -169.09 -75.08 REMARK 500 4 LEU A 60 160.38 -46.39 REMARK 500 4 SER A 72 105.55 -55.27 REMARK 500 4 SER A 73 151.70 61.89 REMARK 500 5 SER A 5 -58.47 -142.34 REMARK 500 5 SER A 68 134.15 64.91 REMARK 500 5 SER A 72 -58.92 -130.18 REMARK 500 6 SER A 2 103.30 -56.00 REMARK 500 6 SER A 3 101.86 54.78 REMARK 500 6 SER A 5 112.43 61.18 REMARK 500 6 ALA A 29 -70.67 -55.03 REMARK 500 6 ASN A 35 89.60 40.70 REMARK 500 6 ILE A 59 140.28 62.05 REMARK 500 6 LEU A 60 161.24 -45.27 REMARK 500 6 SER A 72 -58.47 -144.77 REMARK 500 7 SER A 5 146.60 -170.07 REMARK 500 7 SER A 6 131.59 67.51 REMARK 500 7 ASN A 35 87.94 47.22 REMARK 500 7 ASN A 56 157.30 -44.68 REMARK 500 7 SER A 64 79.11 -168.13 REMARK 500 8 SER A 2 106.09 -168.00 REMARK 500 8 SER A 3 90.27 -161.35 REMARK 500 8 SER A 5 103.15 63.52 REMARK 500 8 LEU A 8 166.82 56.07 REMARK 500 8 ASN A 35 85.69 45.75 REMARK 500 8 ASN A 56 157.12 -41.09 REMARK 500 8 ILE A 59 106.41 -47.15 REMARK 500 8 SER A 63 112.91 -176.45 REMARK 500 9 SER A 2 88.69 43.19 REMARK 500 9 SER A 36 57.09 -104.73 REMARK 500 9 VAL A 45 -72.04 -58.40 REMARK 500 9 ILE A 59 151.03 -46.29 REMARK 500 9 SER A 63 -50.81 -165.18 REMARK 500 9 SER A 64 114.31 62.53 REMARK 500 10 SER A 3 101.80 61.86 REMARK 500 10 SER A 5 94.36 59.01 REMARK 500 10 ALA A 29 -71.12 -53.97 REMARK 500 10 ASN A 35 91.58 45.20 REMARK 500 10 SER A 47 -62.96 -92.13 REMARK 500 10 ASP A 50 39.28 -92.58 REMARK 500 10 SER A 63 -58.91 -174.12 REMARK 500 10 SER A 64 168.35 65.51 REMARK 500 11 TYR A 31 -71.16 -47.03 REMARK 500 11 ASN A 35 89.61 49.02 REMARK 500 11 ASN A 56 156.08 -41.33 REMARK 500 11 ILE A 59 89.00 39.21 REMARK 500 11 LEU A 60 160.23 -41.31 REMARK 500 11 SER A 72 150.80 -46.74 REMARK 500 11 SER A 73 -70.84 74.24 REMARK 500 12 SER A 6 90.03 57.50 REMARK 500 12 ASN A 35 84.20 45.05 REMARK 500 12 SER A 47 -63.88 -92.03 REMARK 500 12 ASP A 50 40.21 -94.99 REMARK 500 12 ASN A 56 157.28 -40.45 REMARK 500 12 PRO A 57 -166.79 -75.06 REMARK 500 13 SER A 5 117.71 -178.93 REMARK 500 13 SER A 6 97.44 68.31 REMARK 500 13 ASN A 35 53.93 39.40 REMARK 500 13 SER A 36 41.25 -88.76 REMARK 500 13 ASN A 56 155.53 -45.99 REMARK 500 13 LEU A 60 155.53 -42.60 REMARK 500 13 SER A 63 81.86 -65.99 REMARK 500 13 SER A 69 135.53 62.67 REMARK 500 13 SER A 73 153.45 64.37 REMARK 500 14 SER A 3 100.39 65.22 REMARK 500 14 ASN A 35 88.29 46.76 REMARK 500 14 HIS A 48 -63.08 -92.11 REMARK 500 14 MET A 49 -28.91 -39.40 REMARK 500 14 ILE A 59 107.31 -41.78 REMARK 500 14 SER A 63 155.21 61.08 REMARK 500 14 SER A 69 -58.47 -166.02 REMARK 500 14 SER A 72 -58.44 -139.01 REMARK 500 15 SER A 3 -69.91 67.43 REMARK 500 15 SER A 5 145.83 -173.75 REMARK 500 15 SER A 6 94.13 48.52 REMARK 500 15 LEU A 8 173.41 53.69 REMARK 500 15 ALA A 29 -71.24 -52.00 REMARK 500 15 ASN A 35 91.91 44.08 REMARK 500 15 ASN A 56 157.31 -40.46 REMARK 500 15 SER A 63 104.86 -176.22 REMARK 500 15 SER A 64 133.62 -39.50 REMARK 500 16 SER A 2 130.69 -173.33 REMARK 500 16 ASN A 35 103.16 56.18 REMARK 500 16 ASN A 56 155.64 -40.98 REMARK 500 16 SER A 63 -70.19 67.71 REMARK 500 16 SER A 64 95.12 -54.77 REMARK 500 16 SER A 68 126.16 64.20 REMARK 500 16 SER A 72 165.91 60.51 REMARK 500 17 SER A 6 98.26 55.73 REMARK 500 17 ALA A 29 -70.25 -55.99 REMARK 500 17 TYR A 31 -70.99 -53.78 REMARK 500 17 ASN A 35 101.25 53.51 REMARK 500 17 SER A 36 45.27 -146.69 REMARK 500 17 SER A 47 -62.20 -91.67 REMARK 500 17 ASN A 56 170.42 -46.32 REMARK 500 17 PRO A 57 -166.75 -75.01 REMARK 500 17 ILE A 59 107.33 56.99 REMARK 500 17 SER A 69 112.97 -171.42 REMARK 500 17 SER A 72 84.13 -151.27 REMARK 500 18 SER A 2 -58.10 -177.76 REMARK 500 18 SER A 3 83.09 41.92 REMARK 500 18 TYR A 31 -71.02 -44.32 REMARK 500 18 ASN A 35 99.46 52.02 REMARK 500 18 SER A 36 41.18 -147.03 REMARK 500 18 VAL A 45 -71.35 -59.89 REMARK 500 18 MET A 49 -28.90 -39.21 REMARK 500 18 ASN A 56 156.74 -40.64 REMARK 500 19 SER A 2 131.93 64.01 REMARK 500 19 SER A 6 171.14 -55.67 REMARK 500 19 ILE A 59 137.80 71.13 REMARK 500 19 LEU A 60 154.96 -47.67 REMARK 500 19 SER A 63 172.66 53.37 REMARK 500 19 SER A 64 96.93 58.47 REMARK 500 19 SER A 69 170.94 56.78 REMARK 500 19 SER A 73 -59.66 -133.91 REMARK 500 20 SER A 3 -59.42 74.59 REMARK 500 20 SER A 5 79.73 -176.57 REMARK 500 20 ASN A 35 70.17 40.52 REMARK 500 20 SER A 36 52.80 -112.08 REMARK 500 20 MET A 49 -28.55 -39.89 REMARK 500 20 ASN A 56 157.26 -42.60 REMARK 500 20 ILE A 59 154.06 59.88 REMARK 500 20 SER A 63 107.54 60.99 REMARK 500 20 SER A 64 101.19 -41.17 REMARK 500 20 SER A 68 137.92 -177.98 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002005673.1 RELATED DB: TARGETDB
DBREF 2DAG A 8 68 UNP P45974 UBP5_HUMAN 655 715
SEQADV 2DAG GLY A 1 UNP P45974 CLONING ARTIFACT SEQADV 2DAG SER A 2 UNP P45974 CLONING ARTIFACT SEQADV 2DAG SER A 3 UNP P45974 CLONING ARTIFACT SEQADV 2DAG GLY A 4 UNP P45974 CLONING ARTIFACT SEQADV 2DAG SER A 5 UNP P45974 CLONING ARTIFACT SEQADV 2DAG SER A 6 UNP P45974 CLONING ARTIFACT SEQADV 2DAG GLY A 7 UNP P45974 CLONING ARTIFACT SEQADV 2DAG SER A 69 UNP P45974 CLONING ARTIFACT SEQADV 2DAG GLY A 70 UNP P45974 CLONING ARTIFACT SEQADV 2DAG PRO A 71 UNP P45974 CLONING ARTIFACT SEQADV 2DAG SER A 72 UNP P45974 CLONING ARTIFACT SEQADV 2DAG SER A 73 UNP P45974 CLONING ARTIFACT SEQADV 2DAG GLY A 74 UNP P45974 CLONING ARTIFACT
SEQRES 1 A 74 GLY SER SER GLY SER SER GLY LEU ASP GLU SER VAL ILE SEQRES 2 A 74 ILE GLN LEU VAL GLU MET GLY PHE PRO MET ASP ALA CYS SEQRES 3 A 74 ARG LYS ALA VAL TYR TYR THR GLY ASN SER GLY ALA GLU SEQRES 4 A 74 ALA ALA MET ASN TRP VAL MET SER HIS MET ASP ASP PRO SEQRES 5 A 74 ASP PHE ALA ASN PRO LEU ILE LEU PRO GLY SER SER GLY SEQRES 6 A 74 PRO GLY SER SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 9 GLY A 20 1 12 HELIX 2 2 PRO A 22 GLY A 34 1 13 HELIX 3 3 GLY A 37 MET A 49 1 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000