10 20 30 40 50 60 70 80 2DA6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 13-DEC-05 2DA6
TITLE SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF HEPATOCYTE TITLE 2 NUCLEAR FACTOR 1-BETA (HNF-1BETA)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 1-BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEOBOX DOMAIN; COMPND 5 SYNONYM: HNF-1BETA, HNF-1B, VARIANT HEPATIC NUCLEAR FACTOR COMPND 6 1, VHNF1, HOMEOPROTEIN LFB3, TRANSCRIPTION FACTOR 2, TCF-2; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HNF1B; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050404-17; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HOMEOBOX DOMAIN, THREE HELICES WITH THE DNA BINDING HELIX- KEYWDS 2 TURN-HELIX MOTIF, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA KEYWDS 5 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.OHNISHI,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DA6 1 VERSN REVDAT 1 26-DEC-06 2DA6 0
JRNL AUTH S.OHNISHI,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF JRNL TITL 2 HEPATOCYTE NUCLEAR FACTOR 1-BETA (HNF-1BETA) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DA6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025177.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM PROTEIN U-15N,13C; 20MM REMARK 210 D-TRIS-HCL (PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 38 -19.91 -47.30 REMARK 500 1 VAL A 53 172.17 -56.61 REMARK 500 1 LEU A 61 -36.34 -34.47 REMARK 500 1 SER A 95 44.74 -86.27 REMARK 500 1 ASN A 96 148.61 -174.72 REMARK 500 1 SER A 101 144.69 -174.02 REMARK 500 2 PHE A 11 107.09 -172.24 REMARK 500 2 VAL A 53 173.97 -60.00 REMARK 500 2 LEU A 61 -35.63 -39.73 REMARK 500 2 ASP A 91 176.79 -55.62 REMARK 500 2 PRO A 99 2.40 -69.75 REMARK 500 3 SER A 5 109.62 -163.04 REMARK 500 3 SER A 6 134.06 -37.91 REMARK 500 3 LEU A 61 -34.58 -39.11 REMARK 500 3 SER A 95 43.85 -108.60 REMARK 500 3 SER A 101 46.61 35.97 REMARK 500 4 LEU A 61 -35.40 -37.36 REMARK 500 5 ARG A 10 49.03 -105.24 REMARK 500 5 VAL A 53 174.59 -59.44 REMARK 500 5 HIS A 59 -19.17 -49.03 REMARK 500 5 LEU A 61 -39.78 -35.84 REMARK 500 5 GLU A 68 -37.92 -34.22 REMARK 500 5 SER A 97 155.62 -38.87 REMARK 500 6 SER A 3 160.12 -49.29 REMARK 500 6 VAL A 53 174.51 -58.81 REMARK 500 6 PRO A 55 2.61 -69.74 REMARK 500 6 LEU A 61 -33.66 -39.66 REMARK 500 6 ASP A 91 175.75 -59.25 REMARK 500 6 SER A 101 112.13 -165.09 REMARK 500 7 SER A 3 -51.58 -130.44 REMARK 500 7 SER A 6 135.54 -35.05 REMARK 500 7 VAL A 53 174.10 -58.76 REMARK 500 7 ASP A 91 -178.91 -54.55 REMARK 500 7 SER A 95 174.00 -50.31 REMARK 500 7 ASN A 96 132.62 -35.19 REMARK 500 7 SER A 100 123.67 -175.01 REMARK 500 8 ASN A 9 109.30 -55.17 REMARK 500 8 PHE A 11 126.88 -36.80 REMARK 500 8 VAL A 53 174.13 -59.94 REMARK 500 9 VAL A 53 173.76 -59.73 REMARK 500 9 LEU A 61 -35.05 -34.60 REMARK 500 9 SER A 95 133.84 -34.66 REMARK 500 10 SER A 2 153.02 -40.81 REMARK 500 10 LYS A 33 -37.64 -36.50 REMARK 500 10 LEU A 61 -30.49 -36.27 REMARK 500 10 GLU A 68 -39.46 -36.41 REMARK 500 10 PRO A 99 85.15 -69.74 REMARK 500 10 SER A 100 88.22 -68.64 REMARK 500 11 ASN A 9 37.45 35.86 REMARK 500 11 PHE A 11 127.95 -173.01 REMARK 500 11 GLU A 68 -38.47 -35.24 REMARK 500 11 TYR A 93 123.04 -36.41 REMARK 500 11 SER A 95 150.32 -35.06 REMARK 500 11 SER A 97 164.16 -42.82 REMARK 500 11 PRO A 99 -177.31 -69.73 REMARK 500 12 ARG A 8 120.36 -37.32 REMARK 500 12 LYS A 33 -39.08 -36.32 REMARK 500 12 VAL A 53 174.46 -59.79 REMARK 500 12 LEU A 61 -36.89 -35.97 REMARK 500 12 SER A 95 94.50 -67.09 REMARK 500 13 SER A 2 110.42 -166.27 REMARK 500 13 LYS A 57 57.06 -108.21 REMARK 500 13 ARG A 85 -29.14 -38.55 REMARK 500 13 ASP A 91 -178.91 -54.74 REMARK 500 13 ALA A 92 169.66 -47.71 REMARK 500 13 SER A 101 170.29 -58.35 REMARK 500 14 ASN A 9 40.27 -95.85 REMARK 500 14 LEU A 61 -33.16 -36.53 REMARK 500 14 GLU A 68 -39.84 -34.31 REMARK 500 14 ASP A 91 174.90 -48.85 REMARK 500 14 SER A 94 108.94 -55.28 REMARK 500 15 LYS A 33 -36.14 -38.80 REMARK 500 15 ASP A 91 147.31 -38.21 REMARK 500 16 SER A 3 42.09 -109.40 REMARK 500 16 PHE A 11 109.35 -174.01 REMARK 500 16 TRP A 13 174.61 -58.40 REMARK 500 16 VAL A 53 174.22 -59.51 REMARK 500 16 LEU A 61 -37.35 -34.46 REMARK 500 16 ASP A 91 172.26 -54.44 REMARK 500 16 ALA A 92 143.71 -35.37 REMARK 500 16 SER A 94 39.44 72.81 REMARK 500 17 SER A 2 155.99 -40.12 REMARK 500 17 ASN A 9 -64.37 -123.24 REMARK 500 17 VAL A 53 172.22 -57.60 REMARK 500 17 LEU A 61 -35.09 -38.20 REMARK 500 17 GLU A 68 -38.47 -33.88 REMARK 500 17 ASN A 96 41.31 70.29 REMARK 500 17 PRO A 99 86.46 -69.79 REMARK 500 17 SER A 100 106.27 -48.65 REMARK 500 18 LEU A 61 -33.16 -34.47 REMARK 500 18 ASP A 91 178.15 -53.02 REMARK 500 18 PRO A 99 86.68 -69.70 REMARK 500 19 ARG A 10 118.75 -37.70 REMARK 500 19 VAL A 53 174.71 -57.91 REMARK 500 19 LEU A 61 -39.95 -36.12 REMARK 500 19 GLU A 68 -34.44 -33.65 REMARK 500 19 ASP A 91 -179.17 -55.61 REMARK 500 19 PRO A 99 0.27 -69.76 REMARK 500 19 SER A 100 137.40 -35.41 REMARK 500 20 ARG A 8 -64.54 -124.26 REMARK 500 20 ALA A 38 -19.46 -47.84 REMARK 500 20 VAL A 53 173.93 -58.32 REMARK 500 20 GLU A 68 -33.47 -34.08 REMARK 500 20 SER A 100 -61.03 -121.63 REMARK 500 20 SER A 101 128.15 -39.87 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2DA6 A 8 96 UNP P35680 HNF1B_HUMAN 233 321
SEQADV 2DA6 GLY A 1 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 2 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 3 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 GLY A 4 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 5 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 6 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 GLY A 7 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 97 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 GLY A 98 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 PRO A 99 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 100 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 101 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 GLY A 102 UNP P35680 CLONING ARTIFACT
SEQRES 1 A 102 GLY SER SER GLY SER SER GLY ARG ASN ARG PHE LYS TRP SEQRES 2 A 102 GLY PRO ALA SER GLN GLN ILE LEU TYR GLN ALA TYR ASP SEQRES 3 A 102 ARG GLN LYS ASN PRO SER LYS GLU GLU ARG GLU ALA LEU SEQRES 4 A 102 VAL GLU GLU CYS ASN ARG ALA GLU CYS LEU GLN ARG GLY SEQRES 5 A 102 VAL SER PRO SER LYS ALA HIS GLY LEU GLY SER ASN LEU SEQRES 6 A 102 VAL THR GLU VAL ARG VAL TYR ASN TRP PHE ALA ASN ARG SEQRES 7 A 102 ARG LYS GLU GLU ALA PHE ARG GLN LYS LEU ALA MET ASP SEQRES 8 A 102 ALA TYR SER SER ASN SER GLY PRO SER SER GLY
HELIX 1 1 GLY A 14 ASP A 26 1 13 HELIX 2 2 SER A 32 ARG A 51 1 20 HELIX 3 3 LYS A 57 LEU A 65 5 9 HELIX 4 4 THR A 67 ASP A 91 1 25
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000