10 20 30 40 50 60 70 80 2D9V - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MEMBRANE PROTEIN 13-DEC-05 2D9V
TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN HOMOLOGY TITLE 2 DOMAIN-CONTAINING PROTEIN FAMILY B MEMBER 1 FROM MOUSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING PROTEIN COMPND 3 FAMILY B MEMBER 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PH DOMAIN; COMPND 6 SYNONYM: PLECKSTRIN HOMOLOGY DOMAIN RETINAL PROTEIN 1, PH COMPND 7 DOMAIN CONTAINING PROTEIN IN RETINA 1, PHRET1; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PHR1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050302-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PH DOMAIN, PHRET1, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 MEMBRANE PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2D9V 1 VERSN REVDAT 1 13-JUN-06 2D9V 0
JRNL AUTH H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN JRNL TITL 2 HOMOLOGY DOMAIN-CONTAINING PROTEIN FAMILY B MEMBER JRNL TITL 3 1 FROM MOUSE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2D9V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025166.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM PH DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O,10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 47 79.13 -117.93 REMARK 500 1 PHE A 56 47.40 37.05 REMARK 500 1 CYS A 67 151.07 -41.53 REMARK 500 1 GLN A 68 -41.47 -130.93 REMARK 500 1 PRO A 73 -165.77 -69.78 REMARK 500 1 ARG A 76 176.98 -48.09 REMARK 500 1 LEU A 81 151.93 -36.74 REMARK 500 1 PRO A 118 2.81 -69.76 REMARK 500 1 ALA A 119 110.85 -34.14 REMARK 500 1 PRO A 124 2.75 -69.76 REMARK 500 1 SER A 125 131.84 -34.61 REMARK 500 1 SER A 128 -55.05 -129.69 REMARK 500 2 ARG A 22 37.70 34.58 REMARK 500 2 ALA A 45 40.36 -82.14 REMARK 500 2 ASP A 47 42.16 -90.59 REMARK 500 2 GLU A 48 114.76 -37.55 REMARK 500 2 PHE A 56 42.74 36.82 REMARK 500 2 GLN A 68 -63.25 -120.19 REMARK 500 2 PRO A 73 -172.94 -69.78 REMARK 500 2 LEU A 81 142.51 -37.82 REMARK 500 2 PRO A 118 2.78 -69.71 REMARK 500 2 SER A 128 48.44 -90.53 REMARK 500 3 SER A 3 -54.31 -122.79 REMARK 500 3 SER A 6 106.39 -170.77 REMARK 500 3 ARG A 22 41.04 34.44 REMARK 500 3 THR A 44 98.81 -67.16 REMARK 500 3 ALA A 45 44.67 -82.40 REMARK 500 3 ASP A 47 43.72 -87.85 REMARK 500 3 GLU A 48 102.83 -35.81 REMARK 500 3 PHE A 56 47.03 38.32 REMARK 500 3 GLU A 66 -33.74 -34.76 REMARK 500 3 CYS A 67 167.11 -45.41 REMARK 500 3 GLN A 68 -53.78 -132.66 REMARK 500 3 GLU A 74 120.61 -37.57 REMARK 500 3 ARG A 76 173.56 -52.72 REMARK 500 3 SER A 90 139.22 -174.64 REMARK 500 3 THR A 115 105.04 -165.71 REMARK 500 3 PRO A 116 -177.98 -69.85 REMARK 500 4 SER A 6 -176.93 -54.06 REMARK 500 4 VAL A 9 -61.64 -91.29 REMARK 500 4 GLU A 43 -27.12 -39.88 REMARK 500 4 THR A 44 97.62 -67.56 REMARK 500 4 ASP A 47 45.18 -103.93 REMARK 500 4 GLU A 48 106.96 -49.94 REMARK 500 4 PHE A 56 47.98 35.00 REMARK 500 4 ARG A 76 -178.98 -64.86 REMARK 500 4 LEU A 81 151.78 -46.24 REMARK 500 4 LEU A 82 110.78 -166.23 REMARK 500 5 VAL A 9 -60.75 -99.58 REMARK 500 5 SER A 18 177.65 -56.92 REMARK 500 5 ARG A 22 25.62 40.04 REMARK 500 5 THR A 44 88.81 -65.30 REMARK 500 5 ALA A 45 82.59 -57.47 REMARK 500 5 ASP A 47 73.01 -102.61 REMARK 500 5 PHE A 56 41.05 37.51 REMARK 500 5 GLU A 66 -25.51 -39.76 REMARK 500 5 CYS A 67 167.20 -43.76 REMARK 500 5 ASP A 69 37.19 38.41 REMARK 500 5 ARG A 76 174.16 -55.98 REMARK 500 5 LEU A 82 110.39 -161.71 REMARK 500 5 PRO A 118 87.15 -69.75 REMARK 500 5 PRO A 127 90.89 -69.72 REMARK 500 6 SER A 3 43.58 39.00 REMARK 500 6 SER A 18 -177.53 -65.26 REMARK 500 6 ASP A 47 74.24 -117.82 REMARK 500 6 PHE A 56 41.44 36.66 REMARK 500 6 CYS A 67 153.92 -42.31 REMARK 500 6 ASP A 69 37.62 35.07 REMARK 500 6 PRO A 73 -163.69 -69.75 REMARK 500 6 LEU A 81 153.39 -46.39 REMARK 500 6 LEU A 82 112.64 -164.15 REMARK 500 6 THR A 115 111.48 -166.16 REMARK 500 6 SER A 125 170.35 -59.02 REMARK 500 7 SER A 2 126.47 -172.08 REMARK 500 7 VAL A 9 -61.88 -97.57 REMARK 500 7 SER A 18 175.83 -50.98 REMARK 500 7 HIS A 55 108.76 -43.17 REMARK 500 7 PHE A 56 47.99 36.84 REMARK 500 7 ARG A 76 -174.95 -51.52 REMARK 500 7 LEU A 81 146.52 -39.04 REMARK 500 7 LEU A 82 110.97 -162.67 REMARK 500 7 PRO A 118 0.61 -69.77 REMARK 500 7 PRO A 124 -179.54 -69.79 REMARK 500 7 SER A 128 171.05 -58.34 REMARK 500 8 THR A 44 93.79 -65.74 REMARK 500 8 ALA A 45 95.99 -56.98 REMARK 500 8 GLU A 48 93.40 -58.38 REMARK 500 8 PHE A 56 43.33 35.69 REMARK 500 8 ARG A 76 172.10 -58.08 REMARK 500 8 LEU A 81 146.47 -39.02 REMARK 500 8 LEU A 82 110.37 -163.13 REMARK 500 8 PRO A 118 0.11 -69.75 REMARK 500 8 PRO A 124 -176.26 -69.79 REMARK 500 9 PHE A 56 47.56 38.32 REMARK 500 9 ARG A 76 -175.78 -51.11 REMARK 500 9 LEU A 81 142.84 -38.79 REMARK 500 9 THR A 115 112.05 -166.79 REMARK 500 9 PRO A 116 -170.96 -69.81 REMARK 500 9 PRO A 118 1.12 -69.78 REMARK 500 9 VAL A 123 136.61 -171.19 REMARK 500 10 SER A 18 -175.47 -67.37 REMARK 500 10 ARG A 22 38.18 37.07 REMARK 500 10 ALA A 45 87.48 -65.59 REMARK 500 10 GLN A 46 -46.49 -133.45 REMARK 500 10 PHE A 56 48.29 36.14 REMARK 500 10 GLU A 66 -36.74 -34.25 REMARK 500 10 CYS A 67 158.46 -41.04 REMARK 500 10 GLN A 68 -70.42 -114.41 REMARK 500 10 ARG A 76 -173.00 -68.92 REMARK 500 10 SER A 90 127.40 -174.64 REMARK 500 10 THR A 115 106.60 -163.36 REMARK 500 10 PRO A 124 1.33 -69.78 REMARK 500 10 PRO A 127 90.70 -69.69 REMARK 500 11 ARG A 22 26.15 38.74 REMARK 500 11 ALA A 45 49.60 -78.48 REMARK 500 11 ASP A 47 46.05 -101.30 REMARK 500 11 GLU A 48 113.50 -34.44 REMARK 500 11 PHE A 56 35.15 37.18 REMARK 500 11 CYS A 67 151.75 -48.41 REMARK 500 11 ARG A 76 -173.00 -55.03 REMARK 500 11 GLU A 111 -70.06 -74.70 REMARK 500 11 PRO A 124 95.62 -69.80 REMARK 500 12 SER A 19 -62.10 -101.29 REMARK 500 12 ARG A 22 39.66 34.32 REMARK 500 12 GLU A 43 -28.28 -39.23 REMARK 500 12 ALA A 45 47.15 -85.62 REMARK 500 12 ASP A 47 66.40 -114.56 REMARK 500 12 GLU A 48 107.44 -54.54 REMARK 500 12 PHE A 56 45.59 38.23 REMARK 500 12 GLN A 68 -175.27 -54.28 REMARK 500 12 ASP A 69 45.34 -80.52 REMARK 500 12 LEU A 81 143.65 -35.08 REMARK 500 12 LEU A 82 111.25 -163.03 REMARK 500 12 ALA A 121 100.81 -59.46 REMARK 500 12 THR A 122 40.25 -83.79 REMARK 500 12 PRO A 124 95.62 -69.80 REMARK 500 12 SER A 128 143.56 -35.75 REMARK 500 13 VAL A 9 -53.76 -127.55 REMARK 500 13 ALA A 45 47.83 -81.34 REMARK 500 13 ASP A 47 42.46 -105.88 REMARK 500 13 GLU A 48 123.29 -35.44 REMARK 500 13 PHE A 56 47.16 39.36 REMARK 500 13 PRO A 73 -168.61 -69.79 REMARK 500 13 ARG A 76 -176.03 -51.05 REMARK 500 13 LEU A 81 149.03 -34.38 REMARK 500 13 LEU A 82 112.23 -161.44 REMARK 500 13 THR A 115 105.06 -161.05 REMARK 500 14 SER A 5 36.57 39.29 REMARK 500 14 ASP A 47 76.59 -106.70 REMARK 500 14 PHE A 56 45.32 35.88 REMARK 500 14 GLN A 65 -39.66 -38.71 REMARK 500 14 PRO A 73 -178.31 -69.69 REMARK 500 14 ARG A 76 -175.13 -51.36 REMARK 500 14 GLU A 88 -34.16 -36.70 REMARK 500 14 SER A 90 116.69 -166.08 REMARK 500 14 PRO A 116 -177.11 -69.78 REMARK 500 14 SER A 125 -68.08 -92.59 REMARK 500 14 SER A 128 95.64 -40.10 REMARK 500 15 PHE A 56 43.06 35.40 REMARK 500 15 ARG A 76 -172.98 -52.35 REMARK 500 15 LEU A 81 138.42 -38.19 REMARK 500 15 SER A 90 145.93 -171.11 REMARK 500 15 PRO A 116 -176.79 -69.79 REMARK 500 15 PRO A 124 -171.21 -69.75 REMARK 500 15 PRO A 127 86.00 -69.76 REMARK 500 15 SER A 129 154.64 -42.29 REMARK 500 16 VAL A 9 -60.25 -94.70 REMARK 500 16 THR A 44 88.79 -68.21 REMARK 500 16 ALA A 45 88.80 -55.58 REMARK 500 16 GLN A 46 -50.00 -127.73 REMARK 500 16 GLU A 48 106.99 -53.01 REMARK 500 16 PHE A 56 42.20 37.67 REMARK 500 16 GLU A 66 -39.54 -34.46 REMARK 500 16 CYS A 67 149.09 -37.09 REMARK 500 16 GLN A 68 -64.21 -131.84 REMARK 500 16 PRO A 73 -168.73 -69.72 REMARK 500 16 PRO A 124 89.35 -69.77 REMARK 500 17 SER A 5 134.20 -38.41 REMARK 500 17 VAL A 9 -60.88 -95.74 REMARK 500 17 ARG A 22 49.00 37.14 REMARK 500 17 ALA A 45 91.99 -46.31 REMARK 500 17 GLU A 48 92.95 -50.77 REMARK 500 17 ASN A 57 -35.01 -130.66 REMARK 500 17 CYS A 67 124.55 -35.07 REMARK 500 17 PRO A 73 -164.76 -69.81 REMARK 500 17 ARG A 76 172.88 -46.16 REMARK 500 17 THR A 115 105.22 -162.98 REMARK 500 17 PRO A 116 -174.64 -69.78 REMARK 500 17 THR A 122 104.43 -45.76 REMARK 500 17 PRO A 124 1.11 -69.76 REMARK 500 17 SER A 128 152.81 -46.13 REMARK 500 18 GLU A 43 -39.49 -37.62 REMARK 500 18 GLU A 66 -36.96 -34.77 REMARK 500 18 CYS A 67 148.98 -34.25 REMARK 500 18 SER A 90 119.57 -169.79 REMARK 500 18 PRO A 116 -178.07 -69.77 REMARK 500 18 ALA A 119 175.91 -57.09 REMARK 500 18 ALA A 121 141.34 -170.75 REMARK 500 18 SER A 129 108.50 -59.42 REMARK 500 19 VAL A 9 -62.19 -94.61 REMARK 500 19 ARG A 22 42.37 34.38 REMARK 500 19 ASP A 47 44.60 -109.65 REMARK 500 19 GLU A 48 109.34 -36.95 REMARK 500 19 PHE A 56 38.53 35.81 REMARK 500 19 GLU A 74 108.67 -54.90 REMARK 500 19 THR A 115 107.82 -160.51 REMARK 500 19 PRO A 116 -173.26 -69.74 REMARK 500 19 ALA A 121 36.38 71.90 REMARK 500 20 ARG A 22 47.82 34.41 REMARK 500 20 ALA A 45 91.21 -65.05 REMARK 500 20 PHE A 56 45.90 36.03 REMARK 500 20 GLN A 68 -174.96 -58.54 REMARK 500 20 ASP A 69 39.72 -82.03 REMARK 500 20 GLU A 74 145.64 -38.45 REMARK 500 20 PRO A 116 -177.16 -69.67 REMARK 500 20 PRO A 124 98.09 -69.77 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMI002018667.1 RELATED DB: TARGETDB
DBREF 2D9V A 8 124 UNP Q9QYE9 PLEB1_MOUSE 22 138
SEQADV 2D9V GLY A 1 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V SER A 2 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V SER A 3 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V GLY A 4 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V SER A 5 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V SER A 6 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V GLY A 7 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V SER A 125 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V GLY A 126 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V PRO A 127 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V SER A 128 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V SER A 129 UNP Q9QYE9 CLONING ARTIFACT SEQADV 2D9V GLY A 130 UNP Q9QYE9 CLONING ARTIFACT
SEQRES 1 A 130 GLY SER SER GLY SER SER GLY LEU VAL ARG GLY GLY TRP SEQRES 2 A 130 LEU TRP ARG GLN SER SER ILE LEU ARG ARG TRP LYS ARG SEQRES 3 A 130 ASN TRP PHE ALA LEU TRP LEU ASP GLY THR LEU GLY TYR SEQRES 4 A 130 TYR HIS ASP GLU THR ALA GLN ASP GLU GLU ASP ARG VAL SEQRES 5 A 130 VAL ILE HIS PHE ASN VAL ARG ASP ILE LYS VAL GLY GLN SEQRES 6 A 130 GLU CYS GLN ASP VAL GLN PRO PRO GLU GLY ARG SER ARG SEQRES 7 A 130 ASP GLY LEU LEU THR VAL ASN LEU ARG GLU GLY SER ARG SEQRES 8 A 130 LEU HIS LEU CYS ALA GLU THR ARG ASP ASP ALA ILE ALA SEQRES 9 A 130 TRP LYS THR ALA LEU MET GLU ALA ASN SER THR PRO ALA SEQRES 10 A 130 PRO ALA GLY ALA THR VAL PRO SER GLY PRO SER SER GLY
HELIX 1 1 ARG A 99 ASN A 113 1 15
SHEET 1 A 7 ASP A 50 VAL A 53 0 SHEET 2 A 7 THR A 36 TYR A 40 -1 N LEU A 37 O VAL A 52 SHEET 3 A 7 TRP A 24 TRP A 32 -1 N TRP A 32 O THR A 36 SHEET 4 A 7 LEU A 8 GLN A 17 -1 N LEU A 14 O ASN A 27 SHEET 5 A 7 SER A 90 CYS A 95 -1 O CYS A 95 N TRP A 15 SHEET 6 A 7 LEU A 81 LEU A 86 -1 N VAL A 84 O LEU A 92 SHEET 7 A 7 VAL A 58 VAL A 63 -1 N ASP A 60 O ASN A 85
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000