10 20 30 40 50 60 70 80 2D9E - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 09-DEC-05 2D9E
TITLE SOLUTION STRUCTURE OF THE BROMODOMAIN OF PEREGRIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEREGRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROMODOMAIN; COMPND 5 SYNONYM: BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, COMPND 6 BR140 PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRPF1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050314-10; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS FOUR-HELIX BUNDLE, TRANSCRIPTION ACTIVATOR, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.HATTA,F.HAYASHI,K.IZUMI,M.YOSHIDA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2D9E 1 VERSN REVDAT 1 09-JUN-06 2D9E 0
JRNL AUTH R.HATTA,F.HAYASHI,K.IZUMI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE BROMODOMAIN OF PEREGRIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2D9E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025149.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 294.5 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.26 MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL REMARK 210 (PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMR VIEW 5.0.4, KUJIRA 0.932, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 75 -38.40 -36.23 REMARK 500 1 THR A 87 174.71 -57.70 REMARK 500 1 PHE A 89 -25.62 -38.90 REMARK 500 1 SER A 116 88.19 -62.14 REMARK 500 2 SER A 3 44.59 -80.06 REMARK 500 2 SER A 5 35.45 -86.49 REMARK 500 2 PHE A 89 -25.75 -38.84 REMARK 500 3 SER A 5 89.72 -55.16 REMARK 500 3 ASP A 42 -36.33 -38.13 REMARK 500 3 PRO A 47 93.76 -69.82 REMARK 500 3 ILE A 75 -27.93 -38.93 REMARK 500 3 PHE A 89 -25.68 -39.03 REMARK 500 3 SER A 120 -55.80 -126.31 REMARK 500 4 SER A 5 53.58 -100.31 REMARK 500 4 ASP A 42 -30.47 -37.08 REMARK 500 4 PHE A 89 -26.65 -37.92 REMARK 500 4 SER A 116 114.58 -173.68 REMARK 500 5 SER A 29 -18.73 -49.32 REMARK 500 5 ASN A 78 -31.16 -36.18 REMARK 500 5 THR A 87 170.87 -49.07 REMARK 500 5 PHE A 89 -26.33 -38.16 REMARK 500 5 MET A 114 -38.74 -39.37 REMARK 500 6 PRO A 47 97.80 -69.79 REMARK 500 6 SER A 77 -70.83 -56.08 REMARK 500 6 ASN A 78 -28.58 -37.33 REMARK 500 6 PHE A 89 -26.11 -38.46 REMARK 500 6 PRO A 118 95.45 -69.65 REMARK 500 7 SER A 77 -70.30 -55.07 REMARK 500 7 LYS A 85 -30.34 -39.85 REMARK 500 7 PHE A 89 -26.03 -38.60 REMARK 500 8 ASP A 42 -39.82 -34.41 REMARK 500 8 SER A 77 -70.43 -62.31 REMARK 500 8 ASN A 78 -32.98 -36.18 REMARK 500 8 LYS A 85 -37.91 -37.48 REMARK 500 8 PHE A 89 -26.21 -38.53 REMARK 500 8 SER A 116 110.53 -173.21 REMARK 500 8 PRO A 118 95.65 -69.71 REMARK 500 9 SER A 5 43.23 -82.87 REMARK 500 9 ASP A 66 -36.49 -38.67 REMARK 500 9 ASN A 78 -35.69 -38.11 REMARK 500 9 ASP A 86 45.84 -102.99 REMARK 500 9 PHE A 89 -26.19 -38.29 REMARK 500 10 SER A 5 43.91 -99.90 REMARK 500 10 ILE A 75 -35.23 -36.12 REMARK 500 10 ASN A 78 -32.91 -37.60 REMARK 500 10 LYS A 85 -35.16 -35.87 REMARK 500 10 PHE A 89 -26.63 -37.92 REMARK 500 10 ALA A 111 -17.99 -49.81 REMARK 500 11 SER A 3 -57.05 -126.52 REMARK 500 11 SER A 5 82.30 -66.32 REMARK 500 11 ASP A 42 -33.75 -39.80 REMARK 500 11 ASN A 78 -36.23 -34.49 REMARK 500 11 PHE A 89 -26.30 -38.29 REMARK 500 12 SER A 5 46.28 -90.86 REMARK 500 12 ASN A 78 -37.58 -35.86 REMARK 500 12 PHE A 89 -26.36 -38.08 REMARK 500 13 THR A 87 171.38 -56.89 REMARK 500 13 PHE A 89 -26.14 -38.40 REMARK 500 13 PRO A 118 1.71 -69.70 REMARK 500 14 SER A 77 -70.18 -60.52 REMARK 500 14 ASN A 78 -31.21 -38.21 REMARK 500 14 PHE A 89 -26.45 -38.24 REMARK 500 14 MET A 114 -33.55 -36.66 REMARK 500 14 PRO A 118 99.24 -69.87 REMARK 500 15 ASP A 23 83.14 -69.91 REMARK 500 15 ASP A 42 -27.14 -38.63 REMARK 500 15 ILE A 75 -31.58 -39.74 REMARK 500 15 PHE A 89 -26.24 -38.37 REMARK 500 15 SER A 116 79.72 -101.78 REMARK 500 16 SER A 5 43.90 -88.73 REMARK 500 16 ASP A 42 -34.83 -37.23 REMARK 500 16 ASP A 66 -33.87 -34.86 REMARK 500 16 ILE A 75 -30.48 -37.47 REMARK 500 16 ASN A 83 -175.83 -68.28 REMARK 500 16 PHE A 89 -25.57 -39.25 REMARK 500 17 LEU A 16 -36.51 -37.37 REMARK 500 17 ASP A 42 -33.14 -39.72 REMARK 500 17 PHE A 89 -26.62 -38.06 REMARK 500 17 PRO A 118 92.13 -69.74 REMARK 500 18 ASP A 42 -38.84 -38.66 REMARK 500 18 SER A 77 -70.41 -51.91 REMARK 500 18 THR A 87 173.22 -52.28 REMARK 500 18 PHE A 89 -26.53 -37.92 REMARK 500 18 ALA A 111 -24.82 -39.99 REMARK 500 18 PRO A 118 98.43 -69.80 REMARK 500 19 SER A 2 82.44 -61.82 REMARK 500 19 PRO A 31 -179.11 -69.72 REMARK 500 19 ASP A 42 -32.06 -37.95 REMARK 500 19 ILE A 75 -37.31 -33.43 REMARK 500 19 SER A 77 -73.84 -66.94 REMARK 500 19 LYS A 85 -39.78 -38.65 REMARK 500 19 PHE A 89 -25.95 -38.75 REMARK 500 19 SER A 119 159.46 -39.78 REMARK 500 20 ASP A 42 -33.50 -37.88 REMARK 500 20 PRO A 47 89.23 -69.76 REMARK 500 20 ILE A 75 -39.38 -34.03 REMARK 500 20 THR A 87 179.48 -55.52 REMARK 500 20 ILE A 88 -62.80 -93.58 REMARK 500 20 PHE A 89 -27.14 -37.38 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000027.1 RELATED DB: TARGETDB
DBREF 2D9E A 8 115 GB 19584408 CAD28495 633 740
SEQADV 2D9E GLY A 1 GB 19584408 CLONING ARTIFACT SEQADV 2D9E SER A 2 GB 19584408 CLONING ARTIFACT SEQADV 2D9E SER A 3 GB 19584408 CLONING ARTIFACT SEQADV 2D9E GLY A 4 GB 19584408 CLONING ARTIFACT SEQADV 2D9E SER A 5 GB 19584408 CLONING ARTIFACT SEQADV 2D9E SER A 6 GB 19584408 CLONING ARTIFACT SEQADV 2D9E GLY A 7 GB 19584408 CLONING ARTIFACT SEQADV 2D9E SER A 116 GB 19584408 CLONING ARTIFACT SEQADV 2D9E GLY A 117 GB 19584408 CLONING ARTIFACT SEQADV 2D9E PRO A 118 GB 19584408 CLONING ARTIFACT SEQADV 2D9E SER A 119 GB 19584408 CLONING ARTIFACT SEQADV 2D9E SER A 120 GB 19584408 CLONING ARTIFACT SEQADV 2D9E GLY A 121 GB 19584408 CLONING ARTIFACT
SEQRES 1 A 121 GLY SER SER GLY SER SER GLY PHE LEU ILE LEU LEU ARG SEQRES 2 A 121 LYS THR LEU GLU GLN LEU GLN GLU LYS ASP THR GLY ASN SEQRES 3 A 121 ILE PHE SER GLU PRO VAL PRO LEU SER GLU VAL PRO ASP SEQRES 4 A 121 TYR LEU ASP HIS ILE LYS LYS PRO MET ASP PHE PHE THR SEQRES 5 A 121 MET LYS GLN ASN LEU GLU ALA TYR ARG TYR LEU ASN PHE SEQRES 6 A 121 ASP ASP PHE GLU GLU ASP PHE ASN LEU ILE VAL SER ASN SEQRES 7 A 121 CYS LEU LYS TYR ASN ALA LYS ASP THR ILE PHE TYR ARG SEQRES 8 A 121 ALA ALA VAL ARG LEU ARG GLU GLN GLY GLY ALA VAL LEU SEQRES 9 A 121 ARG GLN ALA ARG ARG GLN ALA GLU LYS MET GLY SER GLY SEQRES 10 A 121 PRO SER SER GLY
HELIX 1 1 SER A 6 ASP A 23 1 18 HELIX 2 2 ASP A 39 ILE A 44 1 6 HELIX 3 3 ASP A 49 ALA A 59 1 11 HELIX 4 4 ASN A 64 ASN A 83 1 20 HELIX 5 5 THR A 87 MET A 114 1 28
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000