10 20 30 40 50 60 70 80 2D92 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 08-DEC-05 2D92
TITLE SOLUTION STRUCTURE OF THE FIFTH PDZ DOMAIN OF INAD-LIKE TITLE 2 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INAD-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: INADL PROTEIN, HINADL, PALS1-ASSOCIATED TIGHT COMPND 6 JUNCTION PROTEIN, PROTEIN ASSOCIATED TO TIGHT JUNCTIONS; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INADL, PATJ; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050214-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PDZ DOMAIN, INAD-LIKE PROTEIN, INADL PROTEIN, HINADL, PALS1- KEYWDS 2 ASSOCIATED TIGHT JUNCTION PROTEIN, PROTEIN ASSOCIATED TO KEYWDS 3 TIGHT JUNCTIONS, INADL, PATJ, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 4 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 5 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 6 RSGI, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.INOUE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2D92 1 VERSN REVDAT 1 08-JUN-06 2D92 0
JRNL AUTH K.INOUE,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIFTH PDZ DOMAIN OF JRNL TITL 2 INAD-LIKE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2D92 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025139.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.43MM U-15N, 13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.93191, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 8 136.81 -36.56 REMARK 500 1 LEU A 9 107.66 -55.36 REMARK 500 1 LEU A 11 -33.32 -36.25 REMARK 500 1 PRO A 14 1.83 -69.75 REMARK 500 1 GLU A 74 50.92 70.16 REMARK 500 1 CYS A 76 103.40 -58.22 REMARK 500 1 ASN A 79 41.46 39.12 REMARK 500 1 PRO A 105 87.84 -69.73 REMARK 500 2 SER A 5 41.94 34.60 REMARK 500 2 PRO A 14 0.73 -69.75 REMARK 500 2 VAL A 56 -37.43 -35.56 REMARK 500 2 GLU A 74 51.40 73.04 REMARK 500 2 PRO A 105 95.21 -69.74 REMARK 500 3 PRO A 14 2.57 -69.68 REMARK 500 3 VAL A 56 -39.42 -36.83 REMARK 500 3 GLU A 74 52.45 74.21 REMARK 500 3 PRO A 105 93.42 -69.86 REMARK 500 4 SER A 6 142.03 -34.68 REMARK 500 4 PRO A 14 0.50 -69.73 REMARK 500 4 VAL A 56 -38.88 -34.94 REMARK 500 4 GLU A 74 51.76 70.87 REMARK 500 4 SER A 103 108.85 -48.32 REMARK 500 4 PRO A 105 81.61 -69.71 REMARK 500 5 LEU A 11 -29.52 -36.93 REMARK 500 5 PRO A 14 2.51 -69.74 REMARK 500 5 PRO A 105 87.53 -69.79 REMARK 500 5 SER A 107 128.36 -173.13 REMARK 500 6 SER A 3 42.92 37.67 REMARK 500 6 PRO A 14 0.87 -69.82 REMARK 500 6 VAL A 52 154.66 -48.07 REMARK 500 6 VAL A 56 -38.28 -33.78 REMARK 500 6 GLU A 74 49.68 73.05 REMARK 500 6 PRO A 105 90.02 -69.76 REMARK 500 7 PRO A 14 2.89 -69.71 REMARK 500 7 VAL A 56 -36.64 -34.40 REMARK 500 7 LEU A 77 38.03 -99.02 REMARK 500 7 PRO A 105 80.14 -69.82 REMARK 500 8 LEU A 9 100.94 -47.87 REMARK 500 8 PRO A 14 2.92 -69.79 REMARK 500 8 LEU A 28 -75.24 -88.20 REMARK 500 8 VAL A 56 -35.20 -39.02 REMARK 500 8 CYS A 76 93.02 -60.06 REMARK 500 8 LEU A 77 31.65 -89.06 REMARK 500 8 PRO A 105 95.39 -69.72 REMARK 500 9 PRO A 14 0.87 -69.82 REMARK 500 9 SER A 50 148.39 -171.59 REMARK 500 9 VAL A 56 -39.69 -35.79 REMARK 500 9 CYS A 76 95.91 -64.83 REMARK 500 9 LEU A 77 31.43 -93.83 REMARK 500 9 PRO A 105 99.05 -69.78 REMARK 500 10 PRO A 14 2.76 -69.79 REMARK 500 10 PRO A 105 94.11 -69.78 REMARK 500 11 LEU A 9 98.60 -64.17 REMARK 500 11 PRO A 14 2.79 -69.74 REMARK 500 11 VAL A 56 -36.92 -35.11 REMARK 500 11 GLU A 74 51.61 70.27 REMARK 500 11 CYS A 76 89.53 -57.97 REMARK 500 11 PRO A 105 88.85 -69.84 REMARK 500 12 PRO A 14 2.82 -69.71 REMARK 500 12 SER A 50 149.85 -174.95 REMARK 500 12 VAL A 56 -34.75 -38.34 REMARK 500 12 CYS A 76 98.12 -63.46 REMARK 500 12 ASN A 79 47.13 38.41 REMARK 500 12 SER A 103 103.85 -42.99 REMARK 500 12 PRO A 105 93.14 -69.72 REMARK 500 13 SER A 6 44.02 -108.09 REMARK 500 13 PRO A 14 2.88 -69.75 REMARK 500 13 VAL A 52 150.79 -49.10 REMARK 500 13 VAL A 56 -39.87 -34.97 REMARK 500 13 PRO A 105 83.40 -69.80 REMARK 500 14 LEU A 11 -35.64 -34.36 REMARK 500 14 VAL A 56 -37.63 -33.72 REMARK 500 14 GLU A 74 48.56 70.64 REMARK 500 14 CYS A 76 104.96 -59.60 REMARK 500 14 ASN A 79 44.45 38.00 REMARK 500 14 PRO A 105 89.22 -69.80 REMARK 500 15 PRO A 14 2.49 -69.75 REMARK 500 15 ALA A 53 107.24 -52.59 REMARK 500 15 ASP A 54 33.60 72.30 REMARK 500 15 VAL A 56 -38.18 -34.43 REMARK 500 15 GLU A 74 53.19 73.09 REMARK 500 15 PRO A 105 93.13 -69.75 REMARK 500 16 PRO A 14 0.90 -69.70 REMARK 500 16 ALA A 53 109.31 -52.63 REMARK 500 16 VAL A 56 -37.11 -36.03 REMARK 500 16 SER A 103 108.13 -52.90 REMARK 500 16 PRO A 105 85.21 -69.81 REMARK 500 17 PRO A 14 3.03 -69.78 REMARK 500 17 VAL A 56 -38.26 -35.58 REMARK 500 17 PRO A 105 89.98 -69.80 REMARK 500 18 GLU A 74 51.30 74.47 REMARK 500 18 LEU A 77 34.68 -97.60 REMARK 500 18 PRO A 105 80.85 -69.76 REMARK 500 19 PRO A 14 1.74 -69.67 REMARK 500 19 PRO A 105 95.62 -69.74 REMARK 500 20 SER A 5 -63.35 -128.61 REMARK 500 20 PRO A 14 2.85 -69.79 REMARK 500 20 VAL A 56 -39.54 -34.77 REMARK 500 20 PRO A 105 87.78 -69.73 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006830.3 RELATED DB: TARGETDB
DBREF 2D92 A 8 102 UNP Q8NI35 INADL_HUMAN 676 770
SEQADV 2D92 GLY A 1 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 SER A 2 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 SER A 3 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 GLY A 4 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 SER A 5 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 SER A 6 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 GLY A 7 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 SER A 103 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 GLY A 104 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 PRO A 105 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 SER A 106 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 SER A 107 UNP Q8NI35 CLONING ARTIFACT SEQADV 2D92 GLY A 108 UNP Q8NI35 CLONING ARTIFACT
SEQRES 1 A 108 GLY SER SER GLY SER SER GLY GLU LEU ALA LEU TRP SER SEQRES 2 A 108 PRO GLU VAL LYS ILE VAL GLU LEU VAL LYS ASP CYS LYS SEQRES 3 A 108 GLY LEU GLY PHE SER ILE LEU ASP TYR GLN ASP PRO LEU SEQRES 4 A 108 ASP PRO THR ARG SER VAL ILE VAL ILE ARG SER LEU VAL SEQRES 5 A 108 ALA ASP GLY VAL ALA GLU ARG SER GLY GLY LEU LEU PRO SEQRES 6 A 108 GLY ASP ARG LEU VAL SER VAL ASN GLU TYR CYS LEU ASP SEQRES 7 A 108 ASN THR SER LEU ALA GLU ALA VAL GLU ILE LEU LYS ALA SEQRES 8 A 108 VAL PRO PRO GLY LEU VAL HIS LEU GLY ILE CYS SER GLY SEQRES 9 A 108 PRO SER SER GLY
HELIX 1 1 GLY A 55 GLY A 61 1 7 HELIX 2 2 SER A 81 VAL A 92 1 12
SHEET 1 A 3 LYS A 17 LYS A 23 0 SHEET 2 A 3 GLY A 95 CYS A 102 -1 O LEU A 99 N VAL A 19 SHEET 3 A 3 ARG A 68 VAL A 72 -1 N ARG A 68 O CYS A 102 SHEET 1 B 2 PHE A 30 GLN A 36 0 SHEET 2 B 2 SER A 44 LEU A 51 -1 O VAL A 45 N TYR A 35
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000