10 20 30 40 50 60 70 80 2D8Z - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN, STRUCTURAL PROTEIN 08-DEC-05 2D8Z
TITLE SOLUTION STRUCTURE OF THE THIRD LIM DOMAIN OF FOUR AND A TITLE 2 HALF LIM DOMAINS PROTEIN 2 (FHL-2)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOUR AND A HALF LIM DOMAINS 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIM DOMAIN; COMPND 5 SYNONYM: LIM-DOMAIN PROTEIN DRAL, SKELETAL MUSCLE LIM- COMPND 6 PROTEIN 3, FHL-2, SLIM 3; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FHL2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050302-10; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS LIM DOMAIN, SKELETAL MUSCLE LIM-PROTEIN 3, LIM-DOMAIN KEYWDS 2 PROTEIN DRAL, FOUR AND A HALF LIM DOMAINS PROTEIN 2, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 4 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN, KEYWDS 6 STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2D8Z 1 VERSN REVDAT 1 08-JUN-06 2D8Z 0
JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD LIM DOMAIN OF FOUR JRNL TITL 2 AND A HALF LIM DOMAINS PROTEIN 2 (FHL-2) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2D8Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025136.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.27MM 13C,15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 0.05MM ZNCL2+ REMARK 210 1MM IDA; 90%H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 12 48.32 73.28 REMARK 500 1 PHE A 32 48.75 -76.07 REMARK 500 1 GLN A 40 94.39 -55.93 REMARK 500 1 SER A 42 98.63 -50.10 REMARK 500 1 ASP A 50 -56.38 -133.68 REMARK 500 1 ASP A 51 -41.66 -133.74 REMARK 500 1 ASP A 61 -48.12 -132.54 REMARK 500 1 PRO A 67 -167.19 -69.75 REMARK 500 2 SER A 6 97.80 -58.19 REMARK 500 2 LYS A 12 49.95 71.25 REMARK 500 2 TYR A 22 117.22 -163.06 REMARK 500 2 PHE A 32 49.69 -75.97 REMARK 500 2 ASP A 50 -56.46 -132.19 REMARK 500 2 ASP A 51 -43.35 -133.88 REMARK 500 2 ASP A 61 -46.01 -132.68 REMARK 500 2 PRO A 67 2.79 -69.73 REMARK 500 3 LYS A 12 49.46 72.04 REMARK 500 3 PHE A 32 44.85 -78.64 REMARK 500 3 GLN A 40 93.59 -53.32 REMARK 500 3 SER A 42 42.69 -79.69 REMARK 500 3 ASP A 50 -63.56 -123.01 REMARK 500 3 ASP A 51 -41.66 -133.71 REMARK 500 3 ASP A 61 -49.21 -133.45 REMARK 500 3 PRO A 67 2.07 -69.76 REMARK 500 3 SER A 68 111.99 -34.59 REMARK 500 3 SER A 69 132.81 -39.20 REMARK 500 4 SER A 2 40.00 -93.81 REMARK 500 4 SER A 6 107.42 -53.01 REMARK 500 4 LYS A 12 49.56 71.26 REMARK 500 4 PHE A 32 44.47 -79.25 REMARK 500 4 GLN A 40 101.59 -53.80 REMARK 500 4 GLN A 44 -177.90 -175.05 REMARK 500 4 ASP A 50 -62.03 -126.48 REMARK 500 4 ASP A 51 -42.60 -132.74 REMARK 500 4 ASP A 61 -45.07 -131.68 REMARK 500 4 SER A 68 42.94 -91.54 REMARK 500 5 SER A 6 110.07 -34.28 REMARK 500 5 LYS A 12 49.49 71.54 REMARK 500 5 TYR A 22 117.48 -162.48 REMARK 500 5 PHE A 32 46.92 -77.60 REMARK 500 5 GLN A 40 93.66 -63.19 REMARK 500 5 SER A 42 90.23 -48.86 REMARK 500 5 ASP A 50 -67.00 -121.34 REMARK 500 5 ASP A 51 -36.89 -132.10 REMARK 500 5 ASP A 61 -57.67 -130.08 REMARK 500 5 SER A 69 91.05 -63.56 REMARK 500 6 SER A 2 112.60 -160.53 REMARK 500 6 LYS A 12 49.80 72.19 REMARK 500 6 TYR A 22 115.33 -163.39 REMARK 500 6 PHE A 32 47.90 -76.23 REMARK 500 6 THR A 47 47.88 31.04 REMARK 500 6 ALA A 48 140.91 -34.05 REMARK 500 6 ASP A 50 -64.92 -131.59 REMARK 500 6 ASN A 57 -73.92 -49.38 REMARK 500 6 ASP A 61 -46.17 -132.79 REMARK 500 7 SER A 6 97.72 -60.59 REMARK 500 7 LYS A 12 49.17 74.18 REMARK 500 7 THR A 16 -63.51 -97.31 REMARK 500 7 TYR A 22 115.04 -162.46 REMARK 500 7 PHE A 32 48.99 -76.88 REMARK 500 7 LEU A 41 30.61 -93.06 REMARK 500 7 SER A 42 39.33 -91.40 REMARK 500 7 ARG A 45 47.84 -76.36 REMARK 500 7 ASP A 50 -64.13 -121.60 REMARK 500 7 ASP A 51 -37.39 -131.43 REMARK 500 7 ASN A 57 -70.52 -48.24 REMARK 500 7 ASP A 61 -46.32 -131.34 REMARK 500 7 SER A 69 135.16 -174.35 REMARK 500 8 SER A 6 101.87 -58.91 REMARK 500 8 LYS A 12 46.67 74.69 REMARK 500 8 THR A 16 -61.06 -99.51 REMARK 500 8 LEU A 41 31.09 -95.48 REMARK 500 8 SER A 42 47.97 -93.96 REMARK 500 8 ARG A 45 92.87 -62.90 REMARK 500 8 ASP A 50 -70.23 -133.27 REMARK 500 8 ASP A 61 -56.59 -129.00 REMARK 500 8 ALA A 64 93.76 -62.62 REMARK 500 8 SER A 68 40.60 -109.30 REMARK 500 9 SER A 6 109.87 -58.25 REMARK 500 9 LYS A 12 50.23 71.42 REMARK 500 9 PHE A 32 49.35 -75.78 REMARK 500 9 LEU A 41 33.41 -96.13 REMARK 500 9 ARG A 45 49.40 -88.13 REMARK 500 9 PHE A 46 156.00 -39.21 REMARK 500 9 ASP A 50 -60.91 -132.41 REMARK 500 9 ASP A 51 -44.61 -134.11 REMARK 500 9 CYS A 55 166.99 -46.60 REMARK 500 9 ASN A 57 -73.54 -44.21 REMARK 500 9 ASP A 61 -45.96 -132.29 REMARK 500 9 TYR A 63 -70.34 -89.95 REMARK 500 9 PRO A 67 90.55 -69.76 REMARK 500 10 SER A 5 42.92 -85.01 REMARK 500 10 SER A 6 90.33 -64.94 REMARK 500 10 LYS A 12 49.99 72.12 REMARK 500 10 PHE A 32 48.59 -76.65 REMARK 500 10 LEU A 41 35.62 -98.72 REMARK 500 10 SER A 42 -60.13 -94.36 REMARK 500 10 ASP A 50 -61.88 -133.30 REMARK 500 10 ASP A 51 -39.18 -133.32 REMARK 500 10 ASP A 61 -57.18 -132.21 REMARK 500 10 PRO A 67 -178.67 -69.77 REMARK 500 11 SER A 6 100.65 -59.68 REMARK 500 11 LYS A 12 49.77 72.09 REMARK 500 11 LYS A 29 -9.70 -59.80 REMARK 500 11 PHE A 32 48.83 -75.91 REMARK 500 11 SER A 42 -61.02 -90.77 REMARK 500 11 ALA A 48 119.11 -161.23 REMARK 500 11 ASP A 50 -61.16 -127.03 REMARK 500 11 ASP A 51 -40.12 -130.33 REMARK 500 11 LEU A 56 -47.05 -28.86 REMARK 500 11 SER A 65 136.13 -174.19 REMARK 500 12 SER A 5 154.74 -39.85 REMARK 500 12 LYS A 12 49.01 73.53 REMARK 500 12 TYR A 22 117.60 -160.31 REMARK 500 12 PHE A 32 48.52 -76.15 REMARK 500 12 GLN A 40 97.04 -62.27 REMARK 500 12 ASP A 50 -64.06 -132.40 REMARK 500 12 ASP A 51 -37.76 -131.58 REMARK 500 12 LEU A 62 -70.22 -32.77 REMARK 500 12 TYR A 63 -69.20 -99.13 REMARK 500 12 ALA A 64 170.49 -48.21 REMARK 500 12 PRO A 67 86.40 -69.76 REMARK 500 12 SER A 68 83.87 -69.75 REMARK 500 13 SER A 6 106.90 -56.83 REMARK 500 13 LYS A 12 47.79 73.18 REMARK 500 13 THR A 16 -61.25 -97.23 REMARK 500 13 PHE A 32 48.32 -76.45 REMARK 500 13 ASP A 50 -62.14 -134.10 REMARK 500 13 ASP A 51 -38.27 -133.63 REMARK 500 13 ASP A 61 -41.82 -134.08 REMARK 500 14 SER A 6 110.52 -34.68 REMARK 500 14 LYS A 12 47.00 74.46 REMARK 500 14 PHE A 32 48.48 -76.53 REMARK 500 14 ASP A 50 -63.30 -124.32 REMARK 500 14 ASP A 51 -41.45 -132.17 REMARK 500 14 LEU A 62 -72.91 -34.58 REMARK 500 14 TYR A 63 -69.67 -94.20 REMARK 500 14 ALA A 64 172.00 -47.45 REMARK 500 15 LYS A 12 49.46 72.83 REMARK 500 15 TYR A 22 118.60 -161.47 REMARK 500 15 PHE A 32 46.59 -80.03 REMARK 500 15 ASP A 50 -64.00 -124.44 REMARK 500 15 ASP A 51 -39.36 -132.34 REMARK 500 15 ASP A 61 -51.81 -131.54 REMARK 500 15 SER A 68 45.41 -85.67 REMARK 500 16 SER A 6 98.33 -62.77 REMARK 500 16 LYS A 12 46.31 74.21 REMARK 500 16 THR A 16 -65.25 -100.94 REMARK 500 16 TYR A 22 115.75 -161.10 REMARK 500 16 PHE A 32 48.46 -76.51 REMARK 500 16 GLN A 40 97.61 -55.90 REMARK 500 16 GLN A 44 -176.88 -175.29 REMARK 500 16 THR A 47 133.96 -170.26 REMARK 500 16 ASP A 50 -61.89 -128.78 REMARK 500 16 ASP A 51 -38.12 -131.52 REMARK 500 16 ASP A 61 -48.74 -132.86 REMARK 500 17 LYS A 12 50.46 71.25 REMARK 500 17 PHE A 32 47.56 -76.81 REMARK 500 17 LEU A 41 33.21 -94.50 REMARK 500 17 THR A 47 54.51 32.84 REMARK 500 17 ALA A 48 132.72 -37.28 REMARK 500 17 ASP A 50 -62.21 -134.35 REMARK 500 17 ASP A 51 -34.29 -132.66 REMARK 500 17 ASP A 61 -47.88 -131.82 REMARK 500 17 PRO A 67 0.24 -69.81 REMARK 500 18 LYS A 12 50.14 72.50 REMARK 500 18 PHE A 32 49.61 -75.79 REMARK 500 18 ASP A 50 -67.89 -134.87 REMARK 500 18 CYS A 55 144.05 -39.62 REMARK 500 18 ASP A 61 -53.80 -131.66 REMARK 500 18 SER A 65 42.86 -93.62 REMARK 500 19 LYS A 12 49.98 71.49 REMARK 500 19 PHE A 32 46.02 -77.53 REMARK 500 19 GLN A 40 109.41 -59.54 REMARK 500 19 ASP A 50 -63.39 -131.51 REMARK 500 19 ASP A 61 -45.52 -134.95 REMARK 500 19 TYR A 63 -63.52 -91.25 REMARK 500 19 SER A 69 42.14 -88.80 REMARK 500 20 SER A 3 79.04 -108.60 REMARK 500 20 LYS A 12 48.50 74.64 REMARK 500 20 PHE A 32 49.67 -75.86 REMARK 500 20 GLN A 40 99.30 -55.07 REMARK 500 20 LEU A 41 36.62 -82.69 REMARK 500 20 ARG A 45 175.33 -59.69 REMARK 500 20 ASP A 61 -44.62 -134.98 REMARK 500 20 ALA A 64 89.49 -65.31 REMARK 500 20 PRO A 67 1.64 -69.74 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 28 ND1 REMARK 620 2 CYS A 8 SG 101.6 REMARK 620 3 CYS A 11 SG 106.6 103.4 REMARK 620 4 CYS A 31 SG 115.8 110.8 116.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 34 SG REMARK 620 2 CYS A 37 SG 101.6 REMARK 620 3 CYS A 55 SG 113.5 112.4 REMARK 620 4 CYS A 58 SG 107.0 109.1 112.6 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002014447.3 RELATED DB: TARGETDB
DBREF 2D8Z A 8 64 GB 17939427 AAH14397 162 218
SEQADV 2D8Z GLY A 1 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z SER A 2 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z SER A 3 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z GLY A 4 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z SER A 5 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z SER A 6 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z GLY A 7 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z SER A 65 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z GLY A 66 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z PRO A 67 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z SER A 68 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z SER A 69 GB 17939427 CLONING ARTIFACT SEQADV 2D8Z GLY A 70 GB 17939427 CLONING ARTIFACT
SEQRES 1 A 70 GLY SER SER GLY SER SER GLY CYS VAL GLN CYS LYS LYS SEQRES 2 A 70 PRO ILE THR THR GLY GLY VAL THR TYR ARG GLU GLN PRO SEQRES 3 A 70 TRP HIS LYS GLU CYS PHE VAL CYS THR ALA CYS ARG LYS SEQRES 4 A 70 GLN LEU SER GLY GLN ARG PHE THR ALA ARG ASP ASP PHE SEQRES 5 A 70 ALA TYR CYS LEU ASN CYS PHE CYS ASP LEU TYR ALA SER SEQRES 6 A 70 GLY PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 CYS A 55 TYR A 63 1 9
SHEET 1 A 2 GLY A 19 THR A 21 0 SHEET 2 A 2 PRO A 26 HIS A 28 -1 O TRP A 27 N VAL A 20 SHEET 1 B 2 THR A 47 ALA A 48 0 SHEET 2 B 2 ALA A 53 TYR A 54 -1 O TYR A 54 N THR A 47
LINK ZN ZN A 201 ND1 HIS A 28 1555 1555 2.09 LINK ZN ZN A 201 SG CYS A 8 1555 1555 2.40 LINK ZN ZN A 201 SG CYS A 11 1555 1555 2.24 LINK ZN ZN A 201 SG CYS A 31 1555 1555 2.29 LINK ZN ZN A 401 SG CYS A 34 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 37 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 55 1555 1555 2.25 LINK ZN ZN A 401 SG CYS A 58 1555 1555 2.35
SITE 1 AC1 4 CYS A 8 CYS A 11 HIS A 28 CYS A 31 SITE 1 AC2 4 CYS A 34 CYS A 37 CYS A 55 CYS A 58
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000