10 20 30 40 50 60 70 80 2D8H - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER UNKNOWN FUNCTION 06-DEC-05 2D8H
TITLE SOLUTION STRUCTURE OF THE SH3 DOMAIN OF HYPOTHETICAL TITLE 2 PROTEIN SH3YL1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3YL1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SH3YL1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050425-18; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS SH3 DOMAIN, HYPOTHETICAL PROTEIN SH3YL1, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,T.NAGASIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2D8H 1 VERSN REVDAT 1 06-JUN-06 2D8H 0
JRNL AUTH X.R.QIN,T.NAGASIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN OF JRNL TITL 2 HYPOTHETICAL PROTEIN SH3YL1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2D8H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025118.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.19MM 13C,15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 17 -178.51 -69.78 REMARK 500 1 ALA A 38 105.05 -45.09 REMARK 500 1 ASP A 49 44.36 -89.40 REMARK 500 1 PHE A 52 46.84 -89.51 REMARK 500 2 GLU A 9 100.90 -54.80 REMARK 500 2 PRO A 17 -175.09 -69.73 REMARK 500 2 ALA A 38 103.15 -52.67 REMARK 500 2 ASP A 53 155.80 -42.92 REMARK 500 2 PRO A 77 86.75 -69.74 REMARK 500 3 PRO A 17 -179.41 -69.76 REMARK 500 3 PRO A 31 2.89 -69.80 REMARK 500 3 ASP A 49 39.85 -83.75 REMARK 500 3 PHE A 52 -37.78 -39.98 REMARK 500 3 MET A 73 37.49 -99.37 REMARK 500 3 PRO A 77 86.08 -69.78 REMARK 500 4 SER A 2 41.94 70.62 REMARK 500 4 SER A 5 105.83 -161.78 REMARK 500 4 ASP A 33 -176.95 -61.20 REMARK 500 4 ALA A 38 104.26 -51.02 REMARK 500 4 ASP A 49 44.08 -87.06 REMARK 500 4 PRO A 77 -176.34 -69.71 REMARK 500 5 SER A 5 150.59 -48.23 REMARK 500 5 VAL A 11 105.35 -171.70 REMARK 500 5 ASN A 13 128.80 -172.71 REMARK 500 5 ALA A 38 101.56 -54.52 REMARK 500 5 ASP A 49 47.26 -89.54 REMARK 500 5 PHE A 52 48.95 -88.75 REMARK 500 5 PRO A 77 -179.44 -69.70 REMARK 500 6 HIS A 8 172.30 -49.12 REMARK 500 6 VAL A 11 151.24 -38.89 REMARK 500 6 LEU A 14 38.28 75.04 REMARK 500 6 PRO A 17 -174.16 -69.68 REMARK 500 6 ALA A 38 103.35 -55.34 REMARK 500 6 MET A 73 45.57 -102.69 REMARK 500 6 SER A 75 172.29 -59.85 REMARK 500 7 ASN A 15 -39.70 -35.60 REMARK 500 7 PRO A 17 -176.19 -69.81 REMARK 500 7 ALA A 38 103.07 -57.03 REMARK 500 7 ASP A 49 43.22 -89.05 REMARK 500 8 VAL A 11 108.74 -44.61 REMARK 500 8 GLN A 16 144.01 -170.29 REMARK 500 8 ALA A 22 105.24 -58.86 REMARK 500 8 ASP A 33 176.83 -57.85 REMARK 500 8 ALA A 38 104.54 -49.54 REMARK 500 8 THR A 43 97.64 -67.30 REMARK 500 8 ASP A 49 44.70 -83.09 REMARK 500 8 MET A 73 42.21 -91.23 REMARK 500 8 PRO A 77 97.08 -69.78 REMARK 500 9 PRO A 31 2.57 -69.76 REMARK 500 9 ALA A 38 104.29 -55.93 REMARK 500 9 PHE A 52 -39.98 -35.70 REMARK 500 10 VAL A 11 34.12 36.22 REMARK 500 10 PRO A 17 -179.67 -69.77 REMARK 500 10 ALA A 22 109.76 -55.88 REMARK 500 10 PRO A 31 1.52 -69.78 REMARK 500 10 ALA A 38 104.48 -49.40 REMARK 500 10 SER A 78 42.46 38.04 REMARK 500 11 ARG A 10 43.92 -105.62 REMARK 500 11 ALA A 38 104.09 -59.57 REMARK 500 11 MET A 73 45.11 -102.08 REMARK 500 11 SER A 78 111.96 -34.50 REMARK 500 12 ARG A 10 108.35 -38.70 REMARK 500 12 ASP A 33 -175.54 -61.85 REMARK 500 12 ALA A 38 104.36 -52.71 REMARK 500 12 ASP A 49 47.84 -78.65 REMARK 500 12 ASN A 74 139.60 -34.48 REMARK 500 13 PRO A 17 -172.84 -69.85 REMARK 500 13 PRO A 31 2.37 -69.78 REMARK 500 13 SER A 50 133.54 -173.66 REMARK 500 13 ASN A 74 106.66 -59.91 REMARK 500 13 SER A 79 -50.29 -134.12 REMARK 500 14 HIS A 8 99.01 -40.49 REMARK 500 14 ARG A 10 122.61 -35.03 REMARK 500 14 VAL A 11 137.41 -39.08 REMARK 500 14 LEU A 14 79.70 -119.08 REMARK 500 14 ASP A 33 -179.04 -59.82 REMARK 500 14 ALA A 38 104.03 -47.30 REMARK 500 14 MET A 73 50.24 -106.68 REMARK 500 15 SER A 5 -40.30 -133.55 REMARK 500 15 SER A 6 42.42 36.68 REMARK 500 15 VAL A 11 45.01 -107.75 REMARK 500 15 ASN A 15 -25.67 -39.54 REMARK 500 15 PRO A 31 2.57 -69.74 REMARK 500 15 ALA A 38 104.12 -47.59 REMARK 500 15 THR A 43 96.27 -68.87 REMARK 500 15 ASP A 49 42.87 -83.57 REMARK 500 15 MET A 73 78.46 -103.54 REMARK 500 15 PRO A 77 2.78 -69.78 REMARK 500 15 SER A 78 124.58 -34.76 REMARK 500 16 ASN A 13 46.85 -83.59 REMARK 500 16 ASN A 15 -37.73 -34.84 REMARK 500 16 PRO A 17 -177.01 -69.77 REMARK 500 16 PRO A 31 3.05 -69.80 REMARK 500 16 ALA A 38 103.69 -47.79 REMARK 500 16 PHE A 52 -38.64 -38.73 REMARK 500 16 SER A 78 134.28 -39.06 REMARK 500 17 VAL A 11 39.43 -85.08 REMARK 500 17 PRO A 17 -175.75 -69.77 REMARK 500 17 PRO A 31 1.02 -69.81 REMARK 500 17 ALA A 38 104.30 -51.44 REMARK 500 17 HIS A 51 -62.21 -96.78 REMARK 500 17 PHE A 52 -39.84 -35.10 REMARK 500 18 GLN A 16 144.33 -173.48 REMARK 500 18 PRO A 31 1.52 -69.77 REMARK 500 18 ALA A 38 104.32 -51.90 REMARK 500 18 ASP A 49 38.47 -85.34 REMARK 500 18 PRO A 77 -173.79 -69.78 REMARK 500 19 SER A 3 42.25 37.67 REMARK 500 19 SER A 5 118.45 -167.50 REMARK 500 19 PRO A 17 -174.39 -69.80 REMARK 500 19 PRO A 31 1.49 -69.79 REMARK 500 19 ALA A 38 104.13 -51.35 REMARK 500 19 ASP A 49 47.10 -79.59 REMARK 500 20 ARG A 10 42.98 -96.67 REMARK 500 20 VAL A 11 40.79 -85.99 REMARK 500 20 PRO A 31 2.51 -69.73 REMARK 500 20 ALA A 38 104.39 -55.90 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002007134.1 RELATED DB: TARGETDB
DBREF 2D8H A 8 74 GB 14249975 AAH08374 276 342
SEQADV 2D8H GLY A 1 GB 14249975 CLONING ARTIFACT SEQADV 2D8H SER A 2 GB 14249975 CLONING ARTIFACT SEQADV 2D8H SER A 3 GB 14249975 CLONING ARTIFACT SEQADV 2D8H GLY A 4 GB 14249975 CLONING ARTIFACT SEQADV 2D8H SER A 5 GB 14249975 CLONING ARTIFACT SEQADV 2D8H SER A 6 GB 14249975 CLONING ARTIFACT SEQADV 2D8H GLY A 7 GB 14249975 CLONING ARTIFACT SEQADV 2D8H SER A 75 GB 14249975 CLONING ARTIFACT SEQADV 2D8H GLY A 76 GB 14249975 CLONING ARTIFACT SEQADV 2D8H PRO A 77 GB 14249975 CLONING ARTIFACT SEQADV 2D8H SER A 78 GB 14249975 CLONING ARTIFACT SEQADV 2D8H SER A 79 GB 14249975 CLONING ARTIFACT SEQADV 2D8H GLY A 80 GB 14249975 CLONING ARTIFACT
SEQRES 1 A 80 GLY SER SER GLY SER SER GLY HIS GLU ARG VAL GLY ASN SEQRES 2 A 80 LEU ASN GLN PRO ILE GLU VAL THR ALA LEU TYR SER PHE SEQRES 3 A 80 GLU GLY GLN GLN PRO GLY ASP LEU ASN PHE GLN ALA GLY SEQRES 4 A 80 ASP ARG ILE THR VAL ILE SER LYS THR ASP SER HIS PHE SEQRES 5 A 80 ASP TRP TRP GLU GLY LYS LEU ARG GLY GLN THR GLY ILE SEQRES 6 A 80 PHE PRO ALA ASN TYR VAL THR MET ASN SER GLY PRO SER SEQRES 7 A 80 SER GLY
HELIX 1 1 ASN A 69 VAL A 71 5 3
SHEET 1 A 4 ILE A 18 THR A 21 0 SHEET 2 A 4 ARG A 41 SER A 46 -1 O VAL A 44 N ILE A 18 SHEET 3 A 4 TRP A 54 LEU A 59 -1 O LYS A 58 N THR A 43 SHEET 4 A 4 GLN A 62 PRO A 67 -1 O PHE A 66 N TRP A 55 SHEET 1 B 2 PHE A 26 GLU A 27 0 SHEET 2 B 2 ASN A 35 PHE A 36 -1 O PHE A 36 N PHE A 26
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000