10 20 30 40 50 60 70 80 2D8C - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 02-DEC-05 2D8C
TITLE SOLUTION STRUCTURE OF THE SAM-DOMAIN OF MOUSE PHOSPHATIDYL TITLE 2 CERAMIDECHOLINEPHOSPHOTRANSFERASE 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLCHOLINE:CERAMIDE COMPND 3 CHOLINEPHOSPHOTRANSFERASE 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SAM DOMAIN; COMPND 6 SYNONYM: TRANSMEMBRANE PROTEIN 23, SPHINGOMYELIN SYNTHASE COMPND 7 1, MOB PROTEIN; COMPND 8 EC: 2.7.-.-; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: 9530058O11RIK; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041101-13; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS CELL-FREE PROTEIN SYNTHESIS, PROTEIN REGULATION, LIPID KEYWDS 2 METABOLISM, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 3 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.K.GORONCY,T.KIGAWA,S.KOSHIBA,T.TOMIZAWA,N.KOBAYASHI, AUTHOR 2 N.TOCHIO,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2D8C 1 VERSN REVDAT 1 02-JUN-06 2D8C 0
JRNL AUTH A.K.GORONCY,T.KIGAWA,S.KOSHIBA,T.TOMIZAWA, JRNL AUTH 2 N.KOBAYASHI,N.TOCHIO,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SAM-DOMAIN OF MOUSE JRNL TITL 2 PHOSPHATIDYL CERAMIDECHOLINEPHOSPHOTRANSFERASE 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : PETER GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2D8C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025113.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.51MM SAM DOMAIN, 20MM D- REMARK 210 TRIS-HCL, 100MM NACL, 1MM D- REMARK 210 DTT, 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0.17, XWINNMR 3.5, REMARK 210 NMRPIPE 20020425, NMRVIEW REMARK 210 5.0.4, KUJIRA 0.899A REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -58.76 -121.99 REMARK 500 1 VAL A 17 25.77 39.51 REMARK 500 1 TRP A 20 174.19 -51.51 REMARK 500 1 VAL A 25 -37.61 -39.06 REMARK 500 1 ALA A 33 49.45 70.59 REMARK 500 1 ARG A 64 43.32 33.48 REMARK 500 1 MET A 82 -33.26 -34.05 REMARK 500 1 HIS A 89 170.62 -54.64 REMARK 500 1 ASN A 91 139.94 -39.71 REMARK 500 2 SER A 3 151.07 -41.88 REMARK 500 2 SER A 6 41.28 37.23 REMARK 500 2 THR A 13 138.55 -38.00 REMARK 500 2 VAL A 17 25.08 41.21 REMARK 500 2 TRP A 20 -179.12 -53.37 REMARK 500 2 VAL A 25 -33.23 -39.02 REMARK 500 2 ARG A 64 40.23 30.88 REMARK 500 2 ASP A 68 32.99 -97.71 REMARK 500 2 ASN A 69 27.48 40.83 REMARK 500 2 MET A 82 -34.34 -35.86 REMARK 500 2 HIS A 85 82.81 -62.13 REMARK 500 2 LYS A 90 119.80 -162.99 REMARK 500 3 SER A 3 -60.71 -123.80 REMARK 500 3 ALA A 11 -75.04 -60.82 REMARK 500 3 VAL A 17 25.05 42.59 REMARK 500 3 TRP A 20 -176.04 -52.17 REMARK 500 3 VAL A 25 -33.08 -39.28 REMARK 500 3 ALA A 33 44.16 73.00 REMARK 500 3 SER A 67 37.45 -84.48 REMARK 500 3 ASN A 69 31.12 71.79 REMARK 500 3 LEU A 74 -39.99 -39.49 REMARK 500 3 MET A 82 -33.06 -36.82 REMARK 500 3 HIS A 85 82.38 -68.71 REMARK 500 3 MET A 86 41.91 -103.47 REMARK 500 3 SER A 96 41.80 -87.45 REMARK 500 4 VAL A 17 30.87 34.40 REMARK 500 4 TRP A 20 175.59 -53.50 REMARK 500 4 SER A 67 32.93 -86.46 REMARK 500 4 MET A 82 -33.99 -34.41 REMARK 500 4 PRO A 94 87.05 -69.81 REMARK 500 5 MET A 8 171.32 -46.90 REMARK 500 5 ARG A 12 -58.52 -122.50 REMARK 500 5 VAL A 17 24.93 41.99 REMARK 500 5 TRP A 20 179.51 -51.22 REMARK 500 5 VAL A 25 -37.02 -38.96 REMARK 500 5 LEU A 62 100.49 -59.14 REMARK 500 5 ASP A 68 35.34 -83.21 REMARK 500 5 MET A 82 -35.52 -34.05 REMARK 500 5 HIS A 85 46.63 -77.68 REMARK 500 5 GLU A 87 40.53 -97.36 REMARK 500 5 HIS A 89 158.73 -42.85 REMARK 500 5 ASN A 91 150.92 -41.54 REMARK 500 6 SER A 2 43.30 -99.21 REMARK 500 6 LEU A 9 97.48 -48.77 REMARK 500 6 VAL A 17 24.98 39.07 REMARK 500 6 VAL A 25 -36.31 -39.21 REMARK 500 6 ARG A 64 25.56 47.42 REMARK 500 6 MET A 82 -33.81 -33.94 REMARK 500 6 ASN A 91 101.94 -47.13 REMARK 500 7 MET A 8 44.78 35.26 REMARK 500 7 LEU A 9 91.80 -69.82 REMARK 500 7 VAL A 17 25.05 40.35 REMARK 500 7 TRP A 20 177.10 -53.34 REMARK 500 7 VAL A 25 -35.13 -39.26 REMARK 500 7 ALA A 33 48.43 70.66 REMARK 500 7 LEU A 62 100.67 -59.51 REMARK 500 7 ASP A 68 33.55 -93.33 REMARK 500 7 MET A 82 -28.08 -38.01 REMARK 500 7 SER A 96 -61.93 -93.92 REMARK 500 8 SER A 5 142.21 -170.29 REMARK 500 8 VAL A 17 25.53 42.61 REMARK 500 8 TRP A 20 -179.11 -52.68 REMARK 500 8 VAL A 25 -39.12 -39.19 REMARK 500 8 ALA A 33 47.13 70.61 REMARK 500 8 MET A 82 -39.04 -36.59 REMARK 500 8 ASN A 91 99.26 -66.95 REMARK 500 9 SER A 2 106.44 -50.12 REMARK 500 9 ALA A 11 138.69 -170.51 REMARK 500 9 THR A 13 148.87 -38.71 REMARK 500 9 VAL A 17 25.10 39.95 REMARK 500 9 TRP A 20 177.48 -51.16 REMARK 500 9 VAL A 25 -35.28 -38.70 REMARK 500 9 LEU A 62 100.43 -59.82 REMARK 500 9 ARG A 64 28.44 38.09 REMARK 500 9 MET A 82 -33.71 -34.00 REMARK 500 9 HIS A 84 157.80 -48.27 REMARK 500 9 HIS A 89 40.89 -82.20 REMARK 500 10 SER A 5 83.42 -66.82 REMARK 500 10 ARG A 12 -34.87 -39.30 REMARK 500 10 VAL A 17 26.82 38.20 REMARK 500 10 TRP A 20 172.81 -49.85 REMARK 500 10 VAL A 25 -38.50 -39.05 REMARK 500 10 MET A 82 -33.58 -34.09 REMARK 500 10 HIS A 85 48.58 -77.00 REMARK 500 11 VAL A 17 25.01 42.16 REMARK 500 11 TRP A 20 -179.61 -51.26 REMARK 500 11 SER A 67 30.33 -92.98 REMARK 500 11 MET A 82 -38.50 -35.69 REMARK 500 11 LYS A 90 157.75 -49.40 REMARK 500 12 ALA A 11 112.28 -167.84 REMARK 500 12 VAL A 17 31.50 32.90 REMARK 500 12 ALA A 33 49.96 70.68 REMARK 500 12 ARG A 64 25.48 43.40 REMARK 500 12 MET A 82 -27.69 -38.78 REMARK 500 12 GLU A 87 85.13 -62.65 REMARK 500 13 ALA A 11 87.66 -59.79 REMARK 500 13 VAL A 17 25.07 42.16 REMARK 500 13 VAL A 25 -38.44 -39.08 REMARK 500 13 ASP A 68 34.81 -98.95 REMARK 500 13 MET A 82 -38.33 -37.79 REMARK 500 13 HIS A 85 45.33 -78.51 REMARK 500 13 GLU A 87 39.64 34.39 REMARK 500 13 PRO A 94 2.20 -69.77 REMARK 500 14 SER A 5 72.69 -104.46 REMARK 500 14 VAL A 17 25.01 38.74 REMARK 500 14 VAL A 25 -36.33 -39.93 REMARK 500 14 ARG A 64 36.58 38.51 REMARK 500 14 SER A 67 30.79 -87.86 REMARK 500 14 HIS A 84 171.11 -54.92 REMARK 500 14 HIS A 85 45.50 -80.15 REMARK 500 14 SER A 96 99.76 -47.08 REMARK 500 15 SER A 5 41.70 -109.08 REMARK 500 15 SER A 6 108.62 -47.01 REMARK 500 15 VAL A 17 25.08 41.44 REMARK 500 15 TRP A 20 175.73 -51.82 REMARK 500 15 VAL A 25 -37.96 -39.10 REMARK 500 15 LEU A 62 100.86 -59.35 REMARK 500 15 HIS A 85 78.76 -63.83 REMARK 500 15 PRO A 94 89.55 -69.72 REMARK 500 16 VAL A 17 24.95 44.23 REMARK 500 16 TRP A 20 -179.56 -57.11 REMARK 500 16 VAL A 25 -35.36 -39.16 REMARK 500 16 SER A 67 25.39 39.79 REMARK 500 16 MET A 82 -31.15 -35.52 REMARK 500 16 HIS A 85 49.66 -78.15 REMARK 500 16 MET A 86 44.28 -81.55 REMARK 500 16 GLU A 87 77.10 -116.59 REMARK 500 16 LYS A 90 -62.10 -132.20 REMARK 500 16 SER A 92 89.83 -58.43 REMARK 500 16 PRO A 94 87.80 -69.71 REMARK 500 17 SER A 5 118.88 -161.84 REMARK 500 17 MET A 8 60.13 -113.34 REMARK 500 17 VAL A 17 25.07 43.24 REMARK 500 17 SER A 67 39.73 -80.02 REMARK 500 17 MET A 82 -33.00 -34.28 REMARK 500 17 HIS A 85 87.55 -67.09 REMARK 500 17 LYS A 90 91.79 -66.85 REMARK 500 17 PRO A 94 0.82 -69.78 REMARK 500 18 SER A 5 -51.23 -131.39 REMARK 500 18 SER A 10 171.29 -52.70 REMARK 500 18 ARG A 12 -51.84 -124.67 REMARK 500 18 VAL A 17 25.03 39.62 REMARK 500 18 ASP A 68 35.37 -82.33 REMARK 500 18 GLU A 78 -35.14 -38.59 REMARK 500 18 MET A 82 -33.22 -34.07 REMARK 500 18 PRO A 94 -178.26 -69.78 REMARK 500 19 SER A 2 87.60 -65.48 REMARK 500 19 VAL A 17 24.98 40.94 REMARK 500 19 TRP A 20 -176.94 -54.68 REMARK 500 19 VAL A 25 -38.32 -38.98 REMARK 500 19 ARG A 64 40.71 37.86 REMARK 500 19 ASP A 68 31.54 -85.87 REMARK 500 19 MET A 82 -32.66 -34.45 REMARK 500 19 SER A 92 99.99 -62.58 REMARK 500 19 PRO A 94 91.74 -69.73 REMARK 500 20 SER A 3 112.46 -168.66 REMARK 500 20 VAL A 17 24.99 41.31 REMARK 500 20 TRP A 20 177.50 -55.57 REMARK 500 20 VAL A 25 -34.16 -39.27 REMARK 500 20 ARG A 64 25.03 46.17 REMARK 500 20 ASP A 68 33.09 -90.04 REMARK 500 20 MET A 82 -33.24 -38.75 REMARK 500 20 GLU A 87 41.68 31.95 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008001227.1 RELATED DB: TARGETDB
DBREF 2D8C A 8 91 UNP Q8VCQ6 SMS1_MOUSE 1 84
SEQADV 2D8C GLY A 1 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C SER A 2 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C SER A 3 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C GLY A 4 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C SER A 5 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C SER A 6 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C GLY A 7 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C SER A 92 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C GLY A 93 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C PRO A 94 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C SER A 95 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C SER A 96 UNP Q8VCQ6 CLONING ARTIFACT SEQADV 2D8C GLY A 97 UNP Q8VCQ6 CLONING ARTIFACT
SEQRES 1 A 97 GLY SER SER GLY SER SER GLY MET LEU SER ALA ARG THR SEQRES 2 A 97 MET LYS GLU VAL VAL TYR TRP SER PRO LYS LYS VAL ALA SEQRES 3 A 97 ASP TRP LEU LEU GLU ASN ALA MET PRO GLU TYR CYS GLU SEQRES 4 A 97 PRO LEU GLU HIS PHE THR GLY GLN ASP LEU ILE ASN LEU SEQRES 5 A 97 THR GLN GLU ASP PHE LYS LYS PRO PRO LEU TYR ARG VAL SEQRES 6 A 97 SER SER ASP ASN GLY GLN ARG LEU LEU ASP MET ILE GLU SEQRES 7 A 97 THR LEU LYS MET GLU HIS HIS MET GLU ALA HIS LYS ASN SEQRES 8 A 97 SER GLY PRO SER SER GLY
HELIX 1 1 LYS A 23 ASN A 32 1 10 HELIX 2 2 THR A 45 ASN A 51 1 7 HELIX 3 3 THR A 53 LYS A 59 1 7 HELIX 4 4 GLY A 70 HIS A 84 1 15
CISPEP 1 PRO A 60 PRO A 61 1 -0.09 CISPEP 2 PRO A 60 PRO A 61 2 -0.03 CISPEP 3 PRO A 60 PRO A 61 3 -0.13 CISPEP 4 PRO A 60 PRO A 61 4 -0.12 CISPEP 5 PRO A 60 PRO A 61 5 -0.14 CISPEP 6 PRO A 60 PRO A 61 6 -0.10 CISPEP 7 PRO A 60 PRO A 61 7 -0.11 CISPEP 8 PRO A 60 PRO A 61 8 -0.08 CISPEP 9 PRO A 60 PRO A 61 9 -0.09 CISPEP 10 PRO A 60 PRO A 61 10 -0.08 CISPEP 11 PRO A 60 PRO A 61 11 -0.15 CISPEP 12 PRO A 60 PRO A 61 12 -0.18 CISPEP 13 PRO A 60 PRO A 61 13 -0.15 CISPEP 14 PRO A 60 PRO A 61 14 -0.13 CISPEP 15 PRO A 60 PRO A 61 15 -0.14 CISPEP 16 PRO A 60 PRO A 61 16 -0.12 CISPEP 17 PRO A 60 PRO A 61 17 -0.11 CISPEP 18 PRO A 60 PRO A 61 18 -0.16 CISPEP 19 PRO A 60 PRO A 61 19 -0.04 CISPEP 20 PRO A 60 PRO A 61 20 -0.06
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000