10 20 30 40 50 60 70 80 2D86 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN, PROTEIN BINDING 02-DEC-05 2D86
TITLE SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN VAV-3 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: VAV-3 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CH DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VAV3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050404-11; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ALL ALPHA, CALPONIN HOMOLOGY DOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, SIGNALING PROTEIN, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2D86 1 VERSN REVDAT 1 02-DEC-06 2D86 0
JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN JRNL TITL 2 VAV-3 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2D86 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025107.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.23MM CH DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 99.49 -66.84 REMARK 500 1 PHE A 93 -61.03 -93.70 REMARK 500 1 LEU A 100 157.32 -38.43 REMARK 500 1 THR A 125 146.48 -36.02 REMARK 500 1 PRO A 126 2.01 -69.73 REMARK 500 1 ARG A 134 96.17 -32.84 REMARK 500 2 SER A 5 93.21 -64.24 REMARK 500 2 GLU A 9 152.56 -45.09 REMARK 500 2 HIS A 28 170.40 -50.48 REMARK 500 2 GLN A 75 -39.08 -38.03 REMARK 500 2 ASP A 105 -38.30 -36.79 REMARK 500 2 ARG A 134 98.68 -36.28 REMARK 500 2 SER A 138 143.32 -171.40 REMARK 500 2 PRO A 140 95.07 -69.80 REMARK 500 3 HIS A 28 -175.92 -53.14 REMARK 500 3 ALA A 35 160.01 -43.67 REMARK 500 3 GLN A 72 43.36 34.44 REMARK 500 3 VAL A 109 43.14 38.28 REMARK 500 3 PRO A 126 0.50 -69.77 REMARK 500 3 ARG A 134 98.68 -36.36 REMARK 500 3 PHE A 136 156.49 -49.05 REMARK 500 3 SER A 138 112.65 -34.34 REMARK 500 3 PRO A 140 95.01 -69.77 REMARK 500 4 SER A 2 98.22 -53.32 REMARK 500 4 SER A 5 40.36 -106.38 REMARK 500 4 GLU A 9 161.45 -47.40 REMARK 500 4 HIS A 28 168.98 -46.76 REMARK 500 4 ALA A 35 160.35 -49.05 REMARK 500 4 GLN A 72 35.02 70.27 REMARK 500 4 LEU A 77 -70.00 -71.72 REMARK 500 4 PHE A 93 -64.32 -90.92 REMARK 500 4 ASP A 105 -32.83 -37.32 REMARK 500 4 ARG A 110 -73.93 -70.36 REMARK 500 4 THR A 125 149.51 -39.54 REMARK 500 4 ARG A 134 96.07 -32.78 REMARK 500 5 SER A 3 -44.20 -131.44 REMARK 500 5 MET A 8 126.60 -37.47 REMARK 500 5 HIS A 28 -177.12 -51.25 REMARK 500 5 VAL A 37 -38.18 -33.95 REMARK 500 5 GLN A 72 40.32 38.99 REMARK 500 5 PHE A 93 -62.94 -92.70 REMARK 500 5 ARG A 96 96.96 -57.55 REMARK 500 5 LEU A 100 -179.45 -54.85 REMARK 500 5 PRO A 126 0.76 -69.78 REMARK 500 5 PHE A 136 155.29 -49.82 REMARK 500 5 SER A 138 106.50 -51.24 REMARK 500 6 GLU A 9 157.00 -48.36 REMARK 500 6 HIS A 28 -178.67 -51.28 REMARK 500 6 SER A 34 31.94 -92.76 REMARK 500 6 PHE A 93 -64.66 -92.71 REMARK 500 6 VAL A 109 48.78 37.45 REMARK 500 6 ARG A 134 95.67 -32.72 REMARK 500 6 PHE A 136 156.95 -45.36 REMARK 500 6 PRO A 137 2.50 -69.79 REMARK 500 7 PRO A 10 0.49 -69.78 REMARK 500 7 HIS A 28 177.89 -49.25 REMARK 500 7 GLU A 91 -64.62 -93.68 REMARK 500 7 PHE A 93 -63.03 -97.10 REMARK 500 7 LEU A 100 166.12 -48.37 REMARK 500 7 ASP A 105 -35.13 -38.60 REMARK 500 8 SER A 5 42.23 37.90 REMARK 500 8 SER A 6 99.26 -62.58 REMARK 500 8 GLU A 9 154.89 -39.88 REMARK 500 8 HIS A 28 171.74 -49.42 REMARK 500 8 PRO A 71 2.18 -69.84 REMARK 500 8 GLN A 72 34.52 39.59 REMARK 500 8 PHE A 93 -61.53 -97.93 REMARK 500 8 ARG A 96 96.43 -69.10 REMARK 500 8 LYS A 97 -19.76 -47.76 REMARK 500 8 ARG A 124 -31.59 -39.70 REMARK 500 8 ARG A 134 98.81 -36.54 REMARK 500 8 PRO A 137 2.65 -69.71 REMARK 500 8 SER A 138 138.33 -38.29 REMARK 500 9 LYS A 22 51.81 72.47 REMARK 500 9 HIS A 28 170.81 -45.67 REMARK 500 9 ARG A 110 -74.74 -54.72 REMARK 500 9 THR A 125 149.55 -39.05 REMARK 500 9 PRO A 126 2.00 -69.82 REMARK 500 9 ARG A 134 95.71 -32.23 REMARK 500 10 SER A 2 -46.75 -132.19 REMARK 500 10 HIS A 28 -176.86 -50.80 REMARK 500 10 ALA A 35 162.19 -43.76 REMARK 500 10 LEU A 86 -37.63 -38.05 REMARK 500 10 PHE A 93 -69.28 -94.56 REMARK 500 10 LEU A 100 168.94 -47.96 REMARK 500 10 VAL A 109 36.80 39.11 REMARK 500 10 THR A 125 149.61 -38.42 REMARK 500 10 PRO A 126 1.62 -69.77 REMARK 500 10 ARG A 134 97.07 -34.02 REMARK 500 11 HIS A 28 170.75 -48.24 REMARK 500 11 ALA A 35 163.74 -46.50 REMARK 500 11 ARG A 70 54.81 72.68 REMARK 500 11 PRO A 71 2.88 -69.79 REMARK 500 11 ARG A 96 101.30 -56.91 REMARK 500 11 LEU A 100 165.12 -45.89 REMARK 500 11 THR A 125 148.17 -39.43 REMARK 500 11 ARG A 134 96.13 -32.77 REMARK 500 12 SER A 5 152.51 -38.52 REMARK 500 12 HIS A 28 170.94 -46.49 REMARK 500 12 PHE A 93 -66.45 -94.01 REMARK 500 12 ARG A 96 101.91 -58.52 REMARK 500 12 ASP A 105 -39.28 -38.15 REMARK 500 12 ARG A 134 101.75 -41.14 REMARK 500 12 PRO A 137 82.63 -69.72 REMARK 500 12 SER A 142 -50.73 -131.16 REMARK 500 13 HIS A 28 -179.25 -52.31 REMARK 500 13 ALA A 35 157.45 -45.99 REMARK 500 13 GLU A 102 -178.48 -66.07 REMARK 500 13 VAL A 109 41.21 35.41 REMARK 500 13 PRO A 126 3.71 -69.65 REMARK 500 13 ALA A 130 -38.72 -39.11 REMARK 500 13 ARG A 134 97.11 -34.13 REMARK 500 13 SER A 138 85.51 -67.55 REMARK 500 13 SER A 141 117.58 -160.84 REMARK 500 14 HIS A 28 178.84 -48.94 REMARK 500 14 ALA A 35 160.91 -46.47 REMARK 500 14 ASN A 68 89.24 -68.10 REMARK 500 14 GLN A 72 54.59 36.02 REMARK 500 14 MET A 73 49.37 34.83 REMARK 500 14 PHE A 93 -70.43 -93.23 REMARK 500 14 LEU A 100 176.03 -57.96 REMARK 500 14 ASP A 105 -38.13 -34.79 REMARK 500 14 PRO A 126 1.56 -69.83 REMARK 500 14 ARG A 134 107.55 -47.87 REMARK 500 14 PHE A 136 153.79 -44.32 REMARK 500 14 PRO A 140 85.45 -69.77 REMARK 500 15 SER A 2 90.39 -69.71 REMARK 500 15 HIS A 28 169.56 -48.55 REMARK 500 15 ARG A 96 -178.26 -69.46 REMARK 500 15 THR A 125 150.63 -40.54 REMARK 500 15 PRO A 137 -165.85 -69.84 REMARK 500 15 PRO A 140 1.85 -69.82 REMARK 500 16 SER A 6 115.13 -170.59 REMARK 500 16 GLU A 9 161.90 -47.62 REMARK 500 16 LYS A 22 48.97 70.69 REMARK 500 16 HIS A 28 173.23 -52.61 REMARK 500 16 ARG A 70 54.30 73.56 REMARK 500 16 PRO A 71 2.90 -69.79 REMARK 500 16 PHE A 93 -68.58 -92.27 REMARK 500 16 PRO A 126 0.66 -69.73 REMARK 500 16 PRO A 137 -168.88 -69.76 REMARK 500 16 SER A 142 -53.01 -120.86 REMARK 500 17 LYS A 22 49.20 70.38 REMARK 500 17 HIS A 28 173.49 -51.58 REMARK 500 17 ARG A 45 -37.42 -37.45 REMARK 500 17 PHE A 93 -67.06 -95.01 REMARK 500 17 VAL A 109 50.65 35.32 REMARK 500 17 THR A 125 147.28 -35.68 REMARK 500 17 ARG A 134 96.92 -33.78 REMARK 500 18 HIS A 28 -179.49 -52.67 REMARK 500 18 ARG A 70 63.54 -113.50 REMARK 500 18 PRO A 71 17.88 -69.71 REMARK 500 18 GLN A 72 92.72 -28.03 REMARK 500 18 MET A 73 49.77 34.02 REMARK 500 18 ARG A 96 99.32 -56.14 REMARK 500 18 LEU A 100 162.57 -43.25 REMARK 500 18 ASP A 105 -38.10 -36.81 REMARK 500 18 VAL A 109 31.58 38.30 REMARK 500 18 PRO A 126 1.06 -69.72 REMARK 500 18 ARG A 134 103.55 -44.19 REMARK 500 18 PHE A 136 155.96 -40.76 REMARK 500 18 PRO A 140 -179.74 -69.74 REMARK 500 19 SER A 3 153.55 -44.83 REMARK 500 19 LYS A 22 46.26 71.74 REMARK 500 19 HIS A 28 -174.74 -56.88 REMARK 500 19 ALA A 35 167.12 -46.79 REMARK 500 19 PRO A 71 1.07 -69.79 REMARK 500 19 GLN A 72 48.19 34.48 REMARK 500 19 MET A 73 49.07 38.68 REMARK 500 19 PHE A 93 -70.74 -88.18 REMARK 500 19 LEU A 100 157.21 -45.76 REMARK 500 19 ARG A 134 99.39 -37.47 REMARK 500 20 HIS A 28 176.04 -49.31 REMARK 500 20 ALA A 35 166.27 -47.46 REMARK 500 20 VAL A 37 -38.12 -38.29 REMARK 500 20 ARG A 70 54.99 74.41 REMARK 500 20 PRO A 71 0.85 -69.76 REMARK 500 20 PHE A 76 -71.31 -54.94 REMARK 500 20 THR A 84 -32.78 -39.35 REMARK 500 20 LEU A 100 160.47 -49.07 REMARK 500 20 PRO A 126 0.30 -69.78 REMARK 500 20 PRO A 137 -178.55 -69.72 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2D86 A 8 137 UNP Q9UKW4 VAV3_HUMAN 1 130
SEQADV 2D86 GLY A 1 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 2 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 3 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 GLY A 4 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 5 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 6 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 GLY A 7 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 138 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 GLY A 139 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 PRO A 140 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 141 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 142 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 GLY A 143 UNP Q9UKW4 CLONING ARTIFACT
SEQRES 1 A 143 GLY SER SER GLY SER SER GLY MET GLU PRO TRP LYS GLN SEQRES 2 A 143 CYS ALA GLN TRP LEU ILE HIS CYS LYS VAL LEU PRO THR SEQRES 3 A 143 ASN HIS ARG VAL THR TRP ASP SER ALA GLN VAL PHE ASP SEQRES 4 A 143 LEU ALA GLN THR LEU ARG ASP GLY VAL LEU LEU CYS GLN SEQRES 5 A 143 LEU LEU ASN ASN LEU ARG ALA HIS SER ILE ASN LEU LYS SEQRES 6 A 143 GLU ILE ASN LEU ARG PRO GLN MET SER GLN PHE LEU CYS SEQRES 7 A 143 LEU LYS ASN ILE ARG THR PHE LEU THR ALA CYS CYS GLU SEQRES 8 A 143 THR PHE GLY MET ARG LYS SER GLU LEU PHE GLU ALA PHE SEQRES 9 A 143 ASP LEU PHE ASP VAL ARG ASP PHE GLY LYS VAL ILE GLU SEQRES 10 A 143 THR LEU SER ARG LEU SER ARG THR PRO ILE ALA LEU ALA SEQRES 11 A 143 THR GLY ILE ARG PRO PHE PRO SER GLY PRO SER SER GLY
HELIX 1 1 GLU A 9 CYS A 21 1 13 HELIX 2 2 GLN A 36 ASP A 46 1 11 HELIX 3 3 GLY A 47 ARG A 58 1 12 HELIX 4 4 ASN A 63 ILE A 67 5 5 HELIX 5 5 SER A 74 THR A 92 1 19 HELIX 6 6 GLU A 102 ASP A 108 1 7 HELIX 7 7 PHE A 112 SER A 123 1 12 HELIX 8 8 ILE A 127 GLY A 132 1 6
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000