2D6P - Header Asymmetric Unit

HEADER SUGAR BINDING PROTEIN 14-NOV-05 2D6P

TITLE CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD IN TITLE 2 COMPLEX WITH T-ANTIGEN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN, GALACTOSE BINDING, SOLUBLE 9; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL CARBOHYDRATE RECOGNITION COMPND 5 DOMAIN(RESIDUES 1-157); COMPND 6 SYNONYM: GALECTIN-9; COMPND 7 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T-1

KEYWDS BETA SANDWICH, CARBOHYDRATE BINDING PROTEIN, GALECTIN, KEYWDS 2 SUGAR BINDING PROTEIN

EXPDTA X-RAY DIFFRACTION

AUTHOR M.NAGAE,N.NISHI,T.NAKAMURA,T.MURATA,S.WAKATSUKI,R.KATO

REVDAT 3 24-FEB-09 2D6P 1 VERSN REVDAT 2 05-DEC-06 2D6P 1 JRNL REVDAT 1 26-SEP-06 2D6P 0

JRNL AUTH M.NAGAE,N.NISHI,T.MURATA,T.USUI,T.NAKAMURA, JRNL AUTH 2 S.WAKATSUKI,R.KATO JRNL TITL CRYSTAL STRUCTURE OF THE GALECTIN-9 N-TERMINAL JRNL TITL 2 CARBOHYDRATE RECOGNITION DOMAIN FROM MUS MUSCULUS JRNL TITL 3 REVEALS THE BASIC MECHANISM OF CARBOHYDRATE JRNL TITL 4 RECOGNITION JRNL REF J.BIOL.CHEM. V. 281 35884 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16990264 JRNL DOI 10.1074/JBC.M606648200

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 538 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 776 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.4880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : -1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.389 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.281 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.254 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.828 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2470 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3342 ; 1.103 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 6.116 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;36.190 ;24.390 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;13.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.679 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 359 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1899 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1012 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1629 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 110 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.196 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1487 ; 0.425 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2348 ; 0.777 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1095 ; 0.792 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 994 ; 1.297 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS

REMARK 4 REMARK 4 2D6P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-05. REMARK 100 THE RCSB ID CODE IS RCSB025054.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11336 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1A3K REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% ETHANOL, 0.1M CHES (PH9.5) , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.32500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.02550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.02550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.66250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.02550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.02550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 166.98750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.02550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.02550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.66250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.02550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.02550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 166.98750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 111.32500 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 50 REMARK 465 SER A 51 REMARK 465 PHE A 52 REMARK 465 ASN A 53 REMARK 465 ASN A 150 REMARK 465 PHE A 151 REMARK 465 ARG A 152 REMARK 465 PRO A 153 REMARK 465 ALA A 154 REMARK 465 HIS A 155 REMARK 465 GLN A 156 REMARK 465 ALA A 157 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 150 REMARK 465 PHE B 151 REMARK 465 ARG B 152 REMARK 465 PRO B 153 REMARK 465 ALA B 154 REMARK 465 HIS B 155 REMARK 465 GLN B 156 REMARK 465 ALA B 157

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 GLN B 149 CG CD OE1 NE2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 55 34.77 -93.74 REMARK 500 PHE B 40 71.40 -117.31 REMARK 500 GLN B 89 137.62 -172.38 REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NGA A 158 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL A 159 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NGA B 202 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL B 203

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D6K RELATED DB: PDB REMARK 900 THE SAME PROTEIN(CRYSTAL FORM1) REMARK 900 RELATED ID: 2D6L RELATED DB: PDB REMARK 900 THE SAME PROTEIN(CRYSTAL FORM2) REMARK 900 RELATED ID: 2D6M RELATED DB: PDB REMARK 900 THE SAME PROTEIN(LACTOSE COMPLEX) REMARK 900 RELATED ID: 2D6N RELATED DB: PDB REMARK 900 THE SAME PROTEIN(N-ACETYLLACTOSAMINE COMPLEX) REMARK 900 RELATED ID: 2D6O RELATED DB: PDB REMARK 900 THE SAME PROTEIN(LN2 COMPLEX)

DBREF 2D6P A 1 157 UNP Q99L83 Q99L83_MOUSE 1 157 DBREF 2D6P B 1 157 UNP Q99L83 Q99L83_MOUSE 1 157

SEQADV 2D6P GLY A -1 UNP Q99L83 CLONING ARTIFACT SEQADV 2D6P SER A 0 UNP Q99L83 CLONING ARTIFACT SEQADV 2D6P GLY B -1 UNP Q99L83 CLONING ARTIFACT SEQADV 2D6P SER B 0 UNP Q99L83 CLONING ARTIFACT

SEQRES 1 A 159 GLY SER MET ALA LEU PHE SER ALA GLN SER PRO TYR ILE SEQRES 2 A 159 ASN PRO ILE ILE PRO PHE THR GLY PRO ILE GLN GLY GLY SEQRES 3 A 159 LEU GLN GLU GLY LEU GLN VAL THR LEU GLN GLY THR THR SEQRES 4 A 159 LYS SER PHE ALA GLN ARG PHE VAL VAL ASN PHE GLN ASN SEQRES 5 A 159 SER PHE ASN GLY ASN ASP ILE ALA PHE HIS PHE ASN PRO SEQRES 6 A 159 ARG PHE GLU GLU GLY GLY TYR VAL VAL CYS ASN THR LYS SEQRES 7 A 159 GLN ASN GLY GLN TRP GLY PRO GLU GLU ARG LYS MET GLN SEQRES 8 A 159 MET PRO PHE GLN LYS GLY MET PRO PHE GLU LEU CYS PHE SEQRES 9 A 159 LEU VAL GLN ARG SER GLU PHE LYS VAL MET VAL ASN LYS SEQRES 10 A 159 LYS PHE PHE VAL GLN TYR GLN HIS ARG VAL PRO TYR HIS SEQRES 11 A 159 LEU VAL ASP THR ILE ALA VAL SER GLY CYS LEU LYS LEU SEQRES 12 A 159 SER PHE ILE THR PHE GLN THR GLN ASN PHE ARG PRO ALA SEQRES 13 A 159 HIS GLN ALA SEQRES 1 B 159 GLY SER MET ALA LEU PHE SER ALA GLN SER PRO TYR ILE SEQRES 2 B 159 ASN PRO ILE ILE PRO PHE THR GLY PRO ILE GLN GLY GLY SEQRES 3 B 159 LEU GLN GLU GLY LEU GLN VAL THR LEU GLN GLY THR THR SEQRES 4 B 159 LYS SER PHE ALA GLN ARG PHE VAL VAL ASN PHE GLN ASN SEQRES 5 B 159 SER PHE ASN GLY ASN ASP ILE ALA PHE HIS PHE ASN PRO SEQRES 6 B 159 ARG PHE GLU GLU GLY GLY TYR VAL VAL CYS ASN THR LYS SEQRES 7 B 159 GLN ASN GLY GLN TRP GLY PRO GLU GLU ARG LYS MET GLN SEQRES 8 B 159 MET PRO PHE GLN LYS GLY MET PRO PHE GLU LEU CYS PHE SEQRES 9 B 159 LEU VAL GLN ARG SER GLU PHE LYS VAL MET VAL ASN LYS SEQRES 10 B 159 LYS PHE PHE VAL GLN TYR GLN HIS ARG VAL PRO TYR HIS SEQRES 11 B 159 LEU VAL ASP THR ILE ALA VAL SER GLY CYS LEU LYS LEU SEQRES 12 B 159 SER PHE ILE THR PHE GLN THR GLN ASN PHE ARG PRO ALA SEQRES 13 B 159 HIS GLN ALA

HET NGA A 158 15 HET GAL A 159 11 HET NGA B 202 15 HET GAL B 203 11

HETNAM NGA N-ACETYL-D-GALACTOSAMINE HETNAM GAL BETA-D-GALACTOSE

FORMUL 3 NGA 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 HOH *58(H2 O)

HELIX 1 1 PRO A 126 VAL A 130 5 5 HELIX 2 2 ASN B 50 GLY B 54 5 5 HELIX 3 3 PRO B 126 VAL B 130 5 5

SHEET 1 A 6 TYR A 10 ILE A 11 0 SHEET 2 A 6 LEU A 139 THR A 148 -1 O ILE A 144 N TYR A 10 SHEET 3 A 6 LEU A 29 THR A 37 -1 N THR A 36 O LYS A 140 SHEET 4 A 6 PRO A 97 VAL A 104 -1 O LEU A 100 N LEU A 33 SHEET 5 A 6 GLU A 108 VAL A 113 -1 O MET A 112 N CYS A 101 SHEET 6 A 6 LYS A 116 GLN A 122 -1 O PHE A 118 N VAL A 111 SHEET 1 B12 PHE A 17 PRO A 20 0 SHEET 2 B12 THR A 132 GLY A 137 -1 O VAL A 135 N PHE A 17 SHEET 3 B12 PHE A 44 GLN A 49 -1 N ASN A 47 O ALA A 134 SHEET 4 B12 PHE A 59 ARG A 64 -1 O PHE A 61 N VAL A 46 SHEET 5 B12 TYR A 70 ASN A 74 -1 O VAL A 72 N ASN A 62 SHEET 6 B12 GLU A 84 LYS A 87 -1 O GLU A 85 N CYS A 73 SHEET 7 B12 GLU B 85 MET B 88 -1 O ARG B 86 N ARG A 86 SHEET 8 B12 TYR B 70 GLN B 77 -1 N VAL B 71 O LYS B 87 SHEET 9 B12 ILE B 57 ARG B 64 -1 N ARG B 64 O TYR B 70 SHEET 10 B12 PHE B 44 GLN B 49 -1 N PHE B 48 O PHE B 59 SHEET 11 B12 THR B 132 GLY B 137 -1 O SER B 136 N VAL B 45 SHEET 12 B12 PHE B 17 PRO B 20 -1 N PHE B 17 O VAL B 135 SHEET 1 C 9 PHE A 17 PRO A 20 0 SHEET 2 C 9 THR A 132 GLY A 137 -1 O VAL A 135 N PHE A 17 SHEET 3 C 9 PHE A 44 GLN A 49 -1 N ASN A 47 O ALA A 134 SHEET 4 C 9 PHE A 59 ARG A 64 -1 O PHE A 61 N VAL A 46 SHEET 5 C 9 TYR A 70 ASN A 74 -1 O VAL A 72 N ASN A 62 SHEET 6 C 9 GLU A 84 LYS A 87 -1 O GLU A 85 N CYS A 73 SHEET 7 C 9 GLU B 85 MET B 88 -1 O ARG B 86 N ARG A 86 SHEET 8 C 9 TYR B 70 GLN B 77 -1 N VAL B 71 O LYS B 87 SHEET 9 C 9 GLN B 80 TRP B 81 -1 O GLN B 80 N GLN B 77 SHEET 1 D 2 LYS A 76 GLN A 77 0 SHEET 2 D 2 GLN A 80 TRP A 81 -1 O GLN A 80 N GLN A 77 SHEET 1 E 6 TYR B 10 ILE B 11 0 SHEET 2 E 6 LEU B 139 THR B 148 -1 O ILE B 144 N TYR B 10 SHEET 3 E 6 LEU B 29 THR B 37 -1 N GLN B 30 O GLN B 147 SHEET 4 E 6 PRO B 97 VAL B 104 -1 O LEU B 100 N LEU B 33 SHEET 5 E 6 GLU B 108 VAL B 113 -1 O MET B 112 N CYS B 101 SHEET 6 E 6 LYS B 116 GLN B 122 -1 O PHE B 118 N VAL B 111

LINK O3 NGA A 158 C1 GAL A 159 1555 1555 1.42 LINK O3 NGA B 202 C1 GAL B 203 1555 1555 1.43

CISPEP 1 ILE A 15 PRO A 16 0 5.44 CISPEP 2 ILE B 15 PRO B 16 0 0.86

SITE 1 AC1 6 ARG A 43 ARG A 64 GLU A 84 ARG A 86 SITE 2 AC1 6 GAL A 159 HOH A 177 SITE 1 AC2 7 HIS A 60 ASN A 62 ARG A 64 ASN A 74 SITE 2 AC2 7 TRP A 81 GLU A 84 NGA A 158 SITE 1 AC3 6 ARG B 43 ARG B 64 GLU B 84 ARG B 86 SITE 2 AC3 6 GAL B 203 HOH B 209 SITE 1 AC4 7 HIS B 60 ASN B 62 ARG B 64 ASN B 74 SITE 2 AC4 7 TRP B 81 GLU B 84 NGA B 202

CRYST1 58.051 58.051 222.650 90.00 90.00 90.00 P 41 21 2 16

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.017226 0.000000 0.000000 0.00000

SCALE2 0.000000 0.017226 0.000000 0.00000

SCALE3 0.000000 0.000000 0.004491 0.00000