10 20 30 40 50 60 70 80 2D4W - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 24-OCT-05 2D4W
TITLE CRYSTAL STRUCTURE OF GLYCEROL KINASE FROM CELLULOMONAS SP. TITLE 2 NT3060
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.30; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLULOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 40001; SOURCE 4 STRAIN: NT3060; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ALPHA AND BETA PROTEIN, RIBONUCLEASE H-LIKE MOTIF, ACTIN- KEYWDS 2 LIKE ATPASE DOMAIN, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.IMADA,T.TAMURA,K.NAMBA,K.INAGAKI
REVDAT 2 24-FEB-09 2D4W 1 VERSN REVDAT 1 14-NOV-06 2D4W 0
JRNL AUTH K.IMADA,T.TAMURA,K.INAGAKI JRNL TITL STRUCTURE OF GLYCEROL KINASE FROM CELLULOMONAS SP. JRNL TITL 2 NT3060 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4159 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 232 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 385 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.338 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.016 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7948 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10816 ; 1.593 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1004 ; 3.824 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1328 ;17.584 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1192 ; 0.189 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6106 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4119 ; 0.241 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 686 ; 0.168 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.384 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.236 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4958 ; 0.859 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7938 ; 1.581 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2990 ; 2.619 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2878 ; 4.204 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2D4W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-05. REMARK 100 THE RCSB ID CODE IS RCSB024990.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.130 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 55.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIROAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27-37% MPD, 0.1M CITRATE, PH 4.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.85750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.71500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.92875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.71500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 146.78625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.71500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.71500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.92875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.71500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.71500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 146.78625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 97.85750 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSMBLY IS A DIMER IN THE ASYMMETRIC UNIT.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 505 REMARK 465 GLN B 505
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C5 MPD B 1001 O HOH B 3167 2.01 REMARK 500 C5 MPD A 1 O HOH A 2128 2.06 REMARK 500 O4 MPD B 3001 O HOH B 3051 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 218 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 246 CB - CG - OD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP A 297 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 340 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 340 CB - CG - OD2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 361 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 431 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 464 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 145 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 195 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 208 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 330 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 340 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 461 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 83 -28.17 69.62 REMARK 500 ASP A 117 94.65 -31.72 REMARK 500 GLU A 118 88.51 61.74 REMARK 500 MET A 192 2.20 85.20 REMARK 500 GLU A 224 159.60 176.12 REMARK 500 TYR A 293 166.67 179.06 REMARK 500 THR A 311 -86.17 -125.06 REMARK 500 PHE A 354 -111.53 -113.02 REMARK 500 LEU A 405 119.56 -37.38 REMARK 500 LYS A 470 -179.95 -172.32 REMARK 500 SER A 475 -12.37 -143.49 REMARK 500 GLU B 83 -20.57 60.16 REMARK 500 ASN B 163 178.14 -59.10 REMARK 500 MET B 192 -4.77 80.95 REMARK 500 LEU B 199 35.48 70.26 REMARK 500 ALA B 298 153.55 -49.23 REMARK 500 THR B 311 -82.87 -122.28 REMARK 500 PHE B 354 -145.52 -129.43 REMARK 500 GLU B 407 140.54 -175.48 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B3014 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B3109 DISTANCE = 5.28 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1001 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 2001 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 3001
DBREF 2D4W A 2 505 PDB 2D4W 2D4W 2 505 DBREF 2D4W B 2 505 PDB 2D4W 2D4W 2 505
SEQRES 1 A 504 ALA ASP TYR VAL LEU ALA ILE ASP GLN GLY THR THR SER SEQRES 2 A 504 SER ARG ALA ILE VAL PHE ASP HIS SER GLY GLU ILE TYR SEQRES 3 A 504 SER THR GLY GLN LEU GLU HIS ASP GLN ILE PHE PRO ARG SEQRES 4 A 504 ALA GLY TRP VAL GLU HIS ASN PRO GLU GLN ILE TRP ASN SEQRES 5 A 504 ASN VAL ARG GLU VAL VAL GLY LEU ALA LEU THR ARG GLY SEQRES 6 A 504 ASN LEU THR HIS GLU ASP ILE ALA ALA VAL GLY ILE THR SEQRES 7 A 504 ASN GLN ARG GLU THR ALA VAL VAL TRP ASP LYS THR THR SEQRES 8 A 504 GLY LYS PRO VAL TYR ASN ALA ILE VAL TRP GLN ASP THR SEQRES 9 A 504 ARG THR GLN LYS ILE VAL ASP GLU LEU GLY GLY ASP GLU SEQRES 10 A 504 GLY ALA GLU LYS TYR LYS SER ILE VAL GLY LEU PRO LEU SEQRES 11 A 504 ALA THR TYR PHE SER GLY PRO LYS ILE LYS TRP ILE LEU SEQRES 12 A 504 ASP ASN VAL GLU GLY ALA ARG GLU LYS ALA GLU LYS GLY SEQRES 13 A 504 ASP LEU LEU PHE GLY ASN THR ASP THR TRP VAL LEU TRP SEQRES 14 A 504 ASN MET THR GLY GLY THR GLU GLY GLY VAL HIS VAL THR SEQRES 15 A 504 ASP VAL THR ASN ALA SER ARG THR MET LEU MET ASP LEU SEQRES 16 A 504 ASP THR LEU SER TRP ARG GLU ASP ILE ALA ALA ASP MET SEQRES 17 A 504 GLY ILE PRO LEU SER MET LEU PRO ASP ILE ARG SER SER SEQRES 18 A 504 SER GLU VAL TYR GLY HIS GLY ARG PRO ARG GLY LEU VAL SEQRES 19 A 504 PRO GLY VAL PRO ILE ALA GLY ILE LEU GLY ASP GLN GLN SEQRES 20 A 504 ALA ALA THR PHE GLY GLN ALA CYS PHE GLU VAL GLY GLN SEQRES 21 A 504 ALA LYS ASN THR TYR GLY THR GLY ASN PHE LEU LEU LEU SEQRES 22 A 504 ASN THR GLY THR GLU LYS VAL MET SER LYS ASN GLY LEU SEQRES 23 A 504 LEU THR THR VAL CYS TYR LYS ILE GLY ASP ALA PRO ALA SEQRES 24 A 504 VAL TYR ALA LEU GLU GLY SER ILE ALA VAL THR GLY SER SEQRES 25 A 504 LEU VAL GLN TRP LEU ARG ASP ASN LEU GLY MET PHE GLU SEQRES 26 A 504 ASP ALA PRO ASP VAL GLU TRP LEU ALA GLY LYS VAL GLN SEQRES 27 A 504 ASP ASN GLY GLY ALA TYR PHE VAL PRO ALA PHE SER GLY SEQRES 28 A 504 LEU PHE ALA PRO TYR TRP ARG PRO ASP ALA ARG GLY ALA SEQRES 29 A 504 LEU VAL GLY LEU THR ARG TYR VAL ASN ARG ASN HIS ILE SEQRES 30 A 504 ALA ARG ALA ALA LEU GLU ALA THR ALA PHE GLN SER ARG SEQRES 31 A 504 GLU VAL VAL ASP ALA MET ASN ALA ASP SER GLY VAL ASP SEQRES 32 A 504 LEU THR GLU LEU ARG VAL ASP GLY GLY MET VAL ALA ASN SEQRES 33 A 504 GLU LEU LEU MET GLN PHE GLN ALA ASP GLN LEU GLY VAL SEQRES 34 A 504 ASP VAL VAL ARG PRO LYS VAL ALA GLU THR THR ALA LEU SEQRES 35 A 504 GLY ALA ALA TYR ALA ALA GLY ILE ALA VAL GLY PHE TRP SEQRES 36 A 504 LYS GLY GLU GLN ASP VAL ILE ASP ASN TRP ALA GLU ASP SEQRES 37 A 504 LYS ARG TRP SER PRO SER MET GLU SER GLY GLU ARG GLU SEQRES 38 A 504 ARG LEU TYR ARG ASN TRP LYS LYS ALA VAL THR LYS THR SEQRES 39 A 504 MET GLU TRP VAL ASP GLU ASP VAL GLU GLN SEQRES 1 B 504 ALA ASP TYR VAL LEU ALA ILE ASP GLN GLY THR THR SER SEQRES 2 B 504 SER ARG ALA ILE VAL PHE ASP HIS SER GLY GLU ILE TYR SEQRES 3 B 504 SER THR GLY GLN LEU GLU HIS ASP GLN ILE PHE PRO ARG SEQRES 4 B 504 ALA GLY TRP VAL GLU HIS ASN PRO GLU GLN ILE TRP ASN SEQRES 5 B 504 ASN VAL ARG GLU VAL VAL GLY LEU ALA LEU THR ARG GLY SEQRES 6 B 504 ASN LEU THR HIS GLU ASP ILE ALA ALA VAL GLY ILE THR SEQRES 7 B 504 ASN GLN ARG GLU THR ALA VAL VAL TRP ASP LYS THR THR SEQRES 8 B 504 GLY LYS PRO VAL TYR ASN ALA ILE VAL TRP GLN ASP THR SEQRES 9 B 504 ARG THR GLN LYS ILE VAL ASP GLU LEU GLY GLY ASP GLU SEQRES 10 B 504 GLY ALA GLU LYS TYR LYS SER ILE VAL GLY LEU PRO LEU SEQRES 11 B 504 ALA THR TYR PHE SER GLY PRO LYS ILE LYS TRP ILE LEU SEQRES 12 B 504 ASP ASN VAL GLU GLY ALA ARG GLU LYS ALA GLU LYS GLY SEQRES 13 B 504 ASP LEU LEU PHE GLY ASN THR ASP THR TRP VAL LEU TRP SEQRES 14 B 504 ASN MET THR GLY GLY THR GLU GLY GLY VAL HIS VAL THR SEQRES 15 B 504 ASP VAL THR ASN ALA SER ARG THR MET LEU MET ASP LEU SEQRES 16 B 504 ASP THR LEU SER TRP ARG GLU ASP ILE ALA ALA ASP MET SEQRES 17 B 504 GLY ILE PRO LEU SER MET LEU PRO ASP ILE ARG SER SER SEQRES 18 B 504 SER GLU VAL TYR GLY HIS GLY ARG PRO ARG GLY LEU VAL SEQRES 19 B 504 PRO GLY VAL PRO ILE ALA GLY ILE LEU GLY ASP GLN GLN SEQRES 20 B 504 ALA ALA THR PHE GLY GLN ALA CYS PHE GLU VAL GLY GLN SEQRES 21 B 504 ALA LYS ASN THR TYR GLY THR GLY ASN PHE LEU LEU LEU SEQRES 22 B 504 ASN THR GLY THR GLU LYS VAL MET SER LYS ASN GLY LEU SEQRES 23 B 504 LEU THR THR VAL CYS TYR LYS ILE GLY ASP ALA PRO ALA SEQRES 24 B 504 VAL TYR ALA LEU GLU GLY SER ILE ALA VAL THR GLY SER SEQRES 25 B 504 LEU VAL GLN TRP LEU ARG ASP ASN LEU GLY MET PHE GLU SEQRES 26 B 504 ASP ALA PRO ASP VAL GLU TRP LEU ALA GLY LYS VAL GLN SEQRES 27 B 504 ASP ASN GLY GLY ALA TYR PHE VAL PRO ALA PHE SER GLY SEQRES 28 B 504 LEU PHE ALA PRO TYR TRP ARG PRO ASP ALA ARG GLY ALA SEQRES 29 B 504 LEU VAL GLY LEU THR ARG TYR VAL ASN ARG ASN HIS ILE SEQRES 30 B 504 ALA ARG ALA ALA LEU GLU ALA THR ALA PHE GLN SER ARG SEQRES 31 B 504 GLU VAL VAL ASP ALA MET ASN ALA ASP SER GLY VAL ASP SEQRES 32 B 504 LEU THR GLU LEU ARG VAL ASP GLY GLY MET VAL ALA ASN SEQRES 33 B 504 GLU LEU LEU MET GLN PHE GLN ALA ASP GLN LEU GLY VAL SEQRES 34 B 504 ASP VAL VAL ARG PRO LYS VAL ALA GLU THR THR ALA LEU SEQRES 35 B 504 GLY ALA ALA TYR ALA ALA GLY ILE ALA VAL GLY PHE TRP SEQRES 36 B 504 LYS GLY GLU GLN ASP VAL ILE ASP ASN TRP ALA GLU ASP SEQRES 37 B 504 LYS ARG TRP SER PRO SER MET GLU SER GLY GLU ARG GLU SEQRES 38 B 504 ARG LEU TYR ARG ASN TRP LYS LYS ALA VAL THR LYS THR SEQRES 39 B 504 MET GLU TRP VAL ASP GLU ASP VAL GLU GLN
HET MPD A 1 8 HET MPD B1001 8 HET MPD A2001 8 HET MPD B3001 8
HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL
FORMUL 3 MPD 4(C6 H14 O2) FORMUL 7 HOH *353(H2 O)
HELIX 1 1 ASN A 47 GLY A 66 1 20 HELIX 2 2 THR A 69 GLU A 71 5 3 HELIX 3 3 THR A 107 GLY A 116 1 10 HELIX 4 4 GLY A 119 LYS A 122 5 4 HELIX 5 5 TYR A 123 GLY A 128 1 6 HELIX 6 6 PHE A 135 VAL A 147 1 13 HELIX 7 7 GLY A 149 GLY A 157 1 9 HELIX 8 8 ASN A 163 THR A 173 1 11 HELIX 9 9 VAL A 185 SER A 189 1 5 HELIX 10 10 ARG A 202 MET A 209 1 8 HELIX 11 11 PRO A 212 LEU A 216 5 5 HELIX 12 12 ASP A 246 GLN A 254 1 9 HELIX 13 13 GLY A 312 ASN A 321 1 10 HELIX 14 14 VAL A 331 GLY A 336 1 6 HELIX 15 15 ASN A 374 GLY A 402 1 29 HELIX 16 16 GLY A 412 ALA A 416 5 5 HELIX 17 17 ASN A 417 GLY A 429 1 13 HELIX 18 18 GLU A 439 VAL A 453 1 15 HELIX 19 19 GLY A 458 TRP A 466 1 9 HELIX 20 20 GLU A 477 GLU A 501 1 25 HELIX 21 21 ASN B 47 GLY B 66 1 20 HELIX 22 22 THR B 107 GLY B 115 1 9 HELIX 23 23 TYR B 123 GLY B 128 1 6 HELIX 24 24 PHE B 135 VAL B 147 1 13 HELIX 25 25 GLY B 149 GLY B 157 1 9 HELIX 26 26 ASN B 163 THR B 173 1 11 HELIX 27 27 VAL B 185 SER B 189 1 5 HELIX 28 28 ARG B 202 MET B 209 1 8 HELIX 29 29 ASP B 246 GLN B 254 1 9 HELIX 30 30 GLY B 312 ASN B 321 1 10 HELIX 31 31 VAL B 331 GLY B 336 1 6 HELIX 32 32 ASN B 374 GLY B 402 1 29 HELIX 33 33 MET B 414 ALA B 416 5 3 HELIX 34 34 ASN B 417 GLY B 429 1 13 HELIX 35 35 GLU B 439 VAL B 453 1 15 HELIX 36 36 GLY B 458 TRP B 466 1 9 HELIX 37 37 GLU B 477 GLU B 501 1 25
SHEET 1 A 6 ILE A 26 GLU A 33 0 SHEET 2 A 6 SER A 14 PHE A 20 -1 N VAL A 19 O TYR A 27 SHEET 3 A 6 TYR A 4 GLN A 10 -1 N ASP A 9 O ARG A 16 SHEET 4 A 6 ILE A 73 ASN A 80 1 O ALA A 74 N TYR A 4 SHEET 5 A 6 PRO A 239 GLY A 245 1 O GLY A 242 N ILE A 78 SHEET 6 A 6 SER A 223 HIS A 228 -1 N GLY A 227 O ILE A 240 SHEET 1 B 2 GLU A 45 HIS A 46 0 SHEET 2 B 2 ALA A 99 ILE A 100 -1 O ALA A 99 N HIS A 46 SHEET 1 C 2 VAL A 86 ASP A 89 0 SHEET 2 C 2 LEU A 159 GLY A 162 -1 O LEU A 160 N TRP A 88 SHEET 1 D 2 VAL A 182 ASP A 184 0 SHEET 2 D 2 ASP A 218 ARG A 220 1 O ARG A 220 N THR A 183 SHEET 1 E 2 MET A 194 ASP A 195 0 SHEET 2 E 2 SER A 200 TRP A 201 -1 O SER A 200 N ASP A 195 SHEET 1 F 7 LEU A 288 TYR A 293 0 SHEET 2 F 7 VAL A 301 ILE A 308 -1 O VAL A 301 N TYR A 293 SHEET 3 F 7 ASN A 270 ASN A 275 -1 N ASN A 270 O ILE A 308 SHEET 4 F 7 GLN A 261 TYR A 266 -1 N THR A 265 O PHE A 271 SHEET 5 F 7 GLU A 407 ASP A 411 1 O ARG A 409 N ALA A 262 SHEET 6 F 7 ASP A 431 PRO A 435 1 O VAL A 433 N LEU A 408 SHEET 7 F 7 GLU A 468 TRP A 472 -1 O ASP A 469 N ARG A 434 SHEET 1 G 4 TYR A 345 VAL A 347 0 SHEET 2 G 4 GLY A 364 LEU A 369 -1 O ALA A 365 N VAL A 347 SHEET 3 G 4 GLY B 364 LEU B 369 -1 O GLY B 364 N LEU A 369 SHEET 4 G 4 TYR B 345 VAL B 347 -1 N TYR B 345 O VAL B 367 SHEET 1 H 6 ILE B 26 GLU B 33 0 SHEET 2 H 6 SER B 14 PHE B 20 -1 N VAL B 19 O TYR B 27 SHEET 3 H 6 TYR B 4 GLN B 10 -1 N ALA B 7 O ILE B 18 SHEET 4 H 6 ILE B 73 ASN B 80 1 O ALA B 74 N TYR B 4 SHEET 5 H 6 PRO B 239 GLY B 245 1 O GLY B 242 N ILE B 78 SHEET 6 H 6 SER B 223 HIS B 228 -1 N TYR B 226 O ILE B 240 SHEET 1 I 2 GLU B 45 HIS B 46 0 SHEET 2 I 2 ALA B 99 ILE B 100 -1 O ALA B 99 N HIS B 46 SHEET 1 J 2 VAL B 86 ASP B 89 0 SHEET 2 J 2 LEU B 159 GLY B 162 -1 O LEU B 160 N TRP B 88 SHEET 1 K 2 VAL B 182 ASP B 184 0 SHEET 2 K 2 ASP B 218 ARG B 220 1 O ARG B 220 N THR B 183 SHEET 1 L 2 MET B 194 ASP B 195 0 SHEET 2 L 2 SER B 200 TRP B 201 -1 O SER B 200 N ASP B 195 SHEET 1 M 7 LEU B 288 TYR B 293 0 SHEET 2 M 7 VAL B 301 ILE B 308 -1 O GLU B 305 N LEU B 288 SHEET 3 M 7 ASN B 270 GLY B 277 -1 N GLY B 277 O TYR B 302 SHEET 4 M 7 GLN B 261 TYR B 266 -1 N THR B 265 O PHE B 271 SHEET 5 M 7 GLU B 407 GLY B 412 1 O ARG B 409 N ALA B 262 SHEET 6 M 7 ASP B 431 PRO B 435 1 O ASP B 431 N LEU B 408 SHEET 7 M 7 GLU B 468 TRP B 472 -1 O TRP B 472 N VAL B 432
CISPEP 1 ALA A 355 PRO A 356 0 -9.06 CISPEP 2 ALA B 355 PRO B 356 0 1.04
SITE 1 AC1 7 ARG A 82 GLU A 83 ARG A 190 ASP A 246 SITE 2 AC1 7 GLN A 247 PHE A 271 HOH A2128 SITE 1 AC2 8 ARG B 82 GLU B 83 TRP B 102 ARG B 190 SITE 2 AC2 8 ASP B 246 PHE B 271 GLU B 305 HOH B3167 SITE 1 AC3 7 VAL A 310 TRP A 317 PRO A 348 ALA A 349 SITE 2 AC3 7 HOH A2105 LEU B 369 THR B 370 SITE 1 AC4 9 LEU A 369 ARG A 371 VAL B 310 LEU B 314 SITE 2 AC4 9 TRP B 317 PRO B 348 ALA B 349 HOH B3051 SITE 3 AC4 9 HOH B3064
CRYST1 105.430 105.430 195.715 90.00 90.00 90.00 P 41 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009485 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009485 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005109 0.00000