10 20 30 40 50 60 70 80 2CYP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE (H2O2(A)) 27-AUG-85 2CYP
TITLE CRYSTAL STRUCTURE OF YEAST CYTOCHROME C PEROXIDASE REFINED TITLE 2 AT 1.7-ANGSTROMS RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.5; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932
KEYWDS OXIDOREDUCTASE (H2O2(A))
EXPDTA X-RAY DIFFRACTION
AUTHOR B.C.FINZEL,T.L.POULOS,J.KRAUT
REVDAT 6 24-FEB-09 2CYP 1 VERSN REVDAT 5 01-APR-03 2CYP 1 JRNL REVDAT 4 15-APR-93 2CYP 3 SEQRES HELIX ATOM REVDAT 3 15-OCT-91 2CYP 1 SOURCE REVDAT 2 25-APR-86 2CYP 1 REMARK REVDAT 1 21-JAN-86 2CYP 0
SPRSDE 21-JAN-86 2CYP 1CYP
JRNL AUTH B.C.FINZEL,T.L.POULOS,J.KRAUT JRNL TITL CRYSTAL STRUCTURE OF YEAST CYTOCHROME C PEROXIDASE JRNL TITL 2 REFINED AT 1.7-A RESOLUTION JRNL REF J.BIOL.CHEM. V. 259 13027 1984 JRNL REFN ISSN 0021-9258 JRNL PMID 6092361
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.L.POULOS,B.C.FINZEL REMARK 1 TITL HEME ENZYME STRUCTURE AND FUNCTION REMARK 1 REF PEPT.PROTEIN REV. V. 4 115 1984 REMARK 1 REFN ISSN 0731-1753 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.L.POULOS,J.KRAUT REMARK 1 TITL A HYPOTHETICAL MODEL OF THE CYTOCHROME C REMARK 1 TITL 2 PEROXIDASE-CYTOCHROME C ELECTRON TRANSFER COMPLEX REMARK 1 REF J.BIOL.CHEM. V. 255 10322 1980 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.L.POULOS,J.KRAUT REMARK 1 TITL THE STEREOCHEMISTRY OF PEROXIDASE CATALYSIS REMARK 1 REF J.BIOL.CHEM. V. 255 8199 1980 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH T.L.POULOS,S.T.FREER,R.A.ALDEN,S.L.EDWARDS, REMARK 1 AUTH 2 U.SKOGLAND,K.TAKIO,B.ERIKSSON,N.-H.XUONG, REMARK 1 AUTH 3 T.YONETANI,J.KRAUT REMARK 1 TITL THE CRYSTAL STRUCTURE OF CYTOCHROME C PEROXIDASE REMARK 1 REF J.BIOL.CHEM. V. 255 575 1980 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 5 REMARK 1 AUTH T.L.POULOS,S.T.FREER,R.A.ALDEN,N.H.XUONG, REMARK 1 AUTH 2 S.L.EDWARDS,R.C.HAMLIN,J.KRAUT REMARK 1 TITL CRYSTALLOGRAPHIC DETERMINATION OF THE HEME REMARK 1 TITL 2 ORIENTATION AND LOCATION OF THE CYANIDE BINDING REMARK 1 TITL 3 SITE IN YEAST CYTOCHROME C PEROXIDASE REMARK 1 REF J.BIOL.CHEM. V. 253 3730 1978 REMARK 1 REFN ISSN 0021-9258
REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2303 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CYP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.70000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 CB OG1 CG2 REMARK 470 LEU A 4 CD1 REMARK 470 VAL A 10 CG2 REMARK 470 LYS A 12 NZ REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 LYS A 21 NZ REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ASN A 38 OD1 ND2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 90 CD CE NZ REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 GLN A 120 OE1 NE2 REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 ASP A 210 OD1 OD2 REMARK 470 LYS A 212 CD CE NZ REMARK 470 ASN A 219 OD1 ND2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 243 CD CE NZ REMARK 470 LYS A 249 CE NZ REMARK 470 LYS A 260 NZ REMARK 470 LYS A 264 CD CE NZ REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 ASP A 279 OD1 OD2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 187 CG TYR A 187 CD1 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 7 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 SER A 9 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 LYS A 12 CA - C - O ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 14 NH1 - CZ - NH2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP A 18 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 PHE A 19 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 31 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 31 NH1 - CZ - NH2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 VAL A 45 CA - CB - CG1 ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO A 44 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 48 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 THR A 63 CA - CB - CG2 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 72 NH1 - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = 7.4 DEGREES REMARK 500 PHE A 91 CB - CG - CD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 GLU A 98 OE1 - CD - OE2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 106 CB - CG - OD1 ANGL. DEV. = 9.5 DEGREES REMARK 500 LEU A 107 O - C - N ANGL. DEV. = 13.0 DEGREES REMARK 500 VAL A 116 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 GLU A 118 OE1 - CD - OE2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 130 NH1 - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 130 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 132 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP A 146 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 PHE A 158 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 160 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 LEU A 161 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP A 165 CB - CG - OD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 VAL A 169 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 HIS A 175 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 TYR A 187 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR A 187 CG - CD1 - CE1 ANGL. DEV. = -6.2 DEGREES REMARK 500 VAL A 197 CG1 - CB - CG2 ANGL. DEV. = 13.7 DEGREES REMARK 500 VAL A 197 CA - CB - CG2 ANGL. DEV. = 9.6 DEGREES REMARK 500 PHE A 202 CB - CG - CD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 LYS A 215 CA - CB - CG ANGL. DEV. = 19.3 DEGREES REMARK 500 TYR A 229 CB - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TYR A 229 CB - CG - CD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 241 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 64 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 148 41.32 -99.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 31 0.08 SIDE_CHAIN REMARK 500 ARG A 127 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 392 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH A 393 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH A 485 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 687 DISTANCE = 8.21 ANGSTROMS REMARK 525 HOH A 693 DISTANCE = 5.40 ANGSTROMS REMARK 525 HOH A 721 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 853 DISTANCE = 7.90 ANGSTROMS REMARK 525 HOH A 997 DISTANCE = 8.91 ANGSTROMS REMARK 525 HOH A 998 DISTANCE = 7.10 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 295 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 O A 296 O 177.8 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 295 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O A 296
DBREF 2CYP A 1 294 UNP P00431 CCPR_YEAST 68 361
SEQRES 1 A 294 THR THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY SEQRES 2 A 294 ARG SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE SEQRES 3 A 294 ALA LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR SEQRES 4 A 294 ILE GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS SEQRES 5 A 294 THR SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SEQRES 6 A 294 SER TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN SEQRES 7 A 294 ASP PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE SEQRES 8 A 294 LEU GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER SEQRES 9 A 294 GLY ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN SEQRES 10 A 294 GLU MET GLN GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG SEQRES 11 A 294 VAL ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG SEQRES 12 A 294 LEU PRO ASP ALA ASP LYS ASP ALA ASP TYR VAL ARG THR SEQRES 13 A 294 PHE PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL SEQRES 14 A 294 ALA LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU SEQRES 15 A 294 LYS ASN SER GLY TYR GLU GLY PRO TRP GLY ALA ALA ASN SEQRES 16 A 294 ASN VAL PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN SEQRES 17 A 294 GLU ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU SEQRES 18 A 294 GLN TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR SEQRES 19 A 294 ASP TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE SEQRES 20 A 294 VAL LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS SEQRES 21 A 294 ASP PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY SEQRES 22 A 294 ILE THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE SEQRES 23 A 294 LYS THR LEU GLU GLU GLN GLY LEU
HET HEM A 295 43 HET O A 296 1
HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM O OXYGEN ATOM
HETSYN HEM HEME
FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 O O FORMUL 4 HOH *262(H2 O)
HELIX 1 A SER A 15 ASP A 33 1 19 HELIX 2 B TYR A 42 SER A 54 1 13 HELIX 3 B1 PHE A 73 ASN A 78 1 6 HELIX 4 C GLY A 84 PHE A 99 1BENT AT PRO 94 16 HELIX 5 D SER A 103 MET A 119 1 17 HELIX 6 E ASP A 150 PHE A 158 1 9 HELIX 7 F ASN A 164 LEU A 177 1 14 HELIX 8 F1 HIS A 181 GLY A 186 1 6 HELIX 9 G GLU A 201 GLU A 209 1 9 HELIX 10 H LEU A 232 GLN A 240 1 9 HELIX 11 I ASP A 241 ASN A 253 1 13 HELIX 12 J GLN A 255 ASN A 272 1 18 HELIX 13 J1 THR A 288 GLY A 293 1 6
SHEET 1 A 2 LYS A 179 THR A 180 0 SHEET 2 A 2 GLY A 189 PRO A 190 -1 O GLY A 189 N THR A 180 SHEET 1 B 3 TRP A 211 LYS A 215 0 SHEET 2 B 3 GLU A 221 SER A 225 -1 O GLN A 222 N GLU A 214 SHEET 3 B 3 MET A 230 MET A 231 -1 N MET A 231 O TRP A 223
LINK NE2 HIS A 175 FE HEM A 295 1555 1555 1.95 LINK FE HEM A 295 O O A 296 1555 1555 2.40
SITE 1 AC1 21 PRO A 44 ARG A 48 TRP A 51 PRO A 145 SITE 2 AC1 21 ASP A 146 MET A 172 ALA A 174 HIS A 175 SITE 3 AC1 21 LEU A 177 GLY A 178 LYS A 179 THR A 180 SITE 4 AC1 21 HIS A 181 ASN A 184 SER A 185 TRP A 191 SITE 5 AC1 21 LEU A 232 O A 296 HOH A 348 HOH A 895 SITE 6 AC1 21 HOH A 896 SITE 1 AC2 5 ARG A 48 TRP A 51 HIS A 52 HEM A 295 SITE 2 AC2 5 HOH A 596
CRYST1 107.400 76.800 51.400 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009311 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013021 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019455 0.00000