10 20 30 40 50 60 70 80 2CWB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 17-JUN-05 2CWB
TITLE SOLUTION STRUCTURE OF THE UBIQUITIN-ASSOCIATED DOMAIN OF TITLE 2 HUMAN BMSC-UBP AND ITS COMPLEX WITH UBIQUITIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERA OF IMMUNOGLOBULIN G BINDING PROTEIN G COMPND 3 AND UBIQUITIN-LIKE PROTEIN SB132; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: C-TERMINAL UBA DOMAIN; COMPND 6 SYNONYM: BONE MARROW STROMAL CELL UBIQUITIN-LIKE PROTEIN, COMPND 7 BMSC-UBP, MGC14421; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: A SOLUBILITY-ENHANCEMENT TAG (SET) GB1, COMPND 11 IMMUNOGLOBULIN G BINDING DOMAIN 1 OF STREPTOCOCCAL PROTEIN COMPND 12 G, WAS USED TO ENHANCE THE SOLUBILITY OF THE UBA DOMAIN OF COMPND 13 BMSC-UBP. THE SEQUENCE OF THE CHIMERICAL HGB1-UBA IS AS COMPND 14 FOLLOWS:MHHHHHHQYKLALNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTY COMPND 15 DDATKTFTVTEGSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGAP.
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP., HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: , HUMAN; SOURCE 4 ORGANISM_TAXID: 1306,9606; SOURCE 5 STRAIN: ,; SOURCE 6 GENE: BMSC-UBP; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHGB
KEYWDS HELICAL BUNDLE, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR Y.G.CHANG,A.X.SONG,Y.G.GAO,Y.H.SHI,X.J.LIN,X.T.CAO,D.H.LIN, AUTHOR 2 H.Y.HU
REVDAT 3 24-FEB-09 2CWB 1 VERSN REVDAT 2 13-JUN-06 2CWB 1 JRNL REVDAT 1 06-JUN-06 2CWB 0
JRNL AUTH Y.G.CHANG,A.X.SONG,Y.G.GAO,Y.H.SHI,X.J.LIN,X.T.CAO, JRNL AUTH 2 D.H.LIN,H.Y.HU JRNL TITL SOLUTION STRUCTURE OF THE UBIQUITIN-ASSOCIATED JRNL TITL 2 DOMAIN OF HUMAN BMSC-UBP AND ITS COMPLEX WITH JRNL TITL 3 UBIQUITIN. JRNL REF PROTEIN SCI. V. 15 1248 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16731964 JRNL DOI 10.1110/PS.051995006
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : J.LINGE, S.O.DONOGHUE, M.NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CWB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024697.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM HGB1-UBA U-15N,13C; 20MM REMARK 210 PHOSPHATE BUFFER; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, ARIA 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 GLN A 8 REMARK 465 TYR A 9 REMARK 465 LYS A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 ASN A 14 REMARK 465 GLY A 15 REMARK 465 LYS A 16 REMARK 465 THR A 17 REMARK 465 LEU A 18 REMARK 465 LYS A 19 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 THR A 22 REMARK 465 THR A 23 REMARK 465 THR A 24 REMARK 465 GLU A 25 REMARK 465 ALA A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 30 REMARK 465 THR A 31 REMARK 465 ALA A 32 REMARK 465 GLU A 33 REMARK 465 LYS A 34 REMARK 465 VAL A 35 REMARK 465 PHE A 36 REMARK 465 LYS A 37 REMARK 465 GLN A 38 REMARK 465 TYR A 39 REMARK 465 ALA A 40 REMARK 465 ASN A 41 REMARK 465 ASP A 42 REMARK 465 ASN A 43 REMARK 465 GLY A 44 REMARK 465 VAL A 45 REMARK 465 ASP A 46 REMARK 465 GLY A 47 REMARK 465 GLU A 48 REMARK 465 TRP A 49 REMARK 465 THR A 50 REMARK 465 TYR A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 ALA A 54 REMARK 465 THR A 55 REMARK 465 LYS A 56 REMARK 465 THR A 57 REMARK 465 PHE A 58 REMARK 465 THR A 59 REMARK 465 VAL A 60 REMARK 465 THR A 61 REMARK 465 GLU A 62
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 65 -10.69 71.50 REMARK 500 1 ALA A 107 149.22 -172.95 REMARK 500 4 ALA A 104 39.47 -157.65 REMARK 500 6 ALA A 107 70.85 59.46 REMARK 500 7 ASP A 80 47.79 -84.94 REMARK 500 7 ALA A 104 -27.89 -148.19 REMARK 500 8 SER A 64 -163.72 -173.32 REMARK 500 10 ALA A 107 88.62 172.50 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2CWB A 9 62 UNP P06654 SPG1_STRSG 229 282 DBREF 2CWB A 64 108 UNP P06654 SPG1_STRSG 336 380
SEQADV 2CWB MET A 1 UNP P06654 EXPRESSION TAG SEQADV 2CWB HIS A 2 UNP P06654 EXPRESSION TAG SEQADV 2CWB HIS A 3 UNP P06654 EXPRESSION TAG SEQADV 2CWB HIS A 4 UNP P06654 EXPRESSION TAG SEQADV 2CWB HIS A 5 UNP P06654 EXPRESSION TAG SEQADV 2CWB HIS A 6 UNP P06654 EXPRESSION TAG SEQADV 2CWB HIS A 7 UNP P06654 EXPRESSION TAG SEQADV 2CWB GLN A 8 UNP P06654 EXPRESSION TAG SEQADV 2CWB ALA A 12 UNP P06654 ILE 232 ENGINEERED SEQADV 2CWB GLY A 63 UNP P06654 LINKER
SEQRES 1 A 108 MET HIS HIS HIS HIS HIS HIS GLN TYR LYS LEU ALA LEU SEQRES 2 A 108 ASN GLY LYS THR LEU LYS GLY GLU THR THR THR GLU ALA SEQRES 3 A 108 VAL ASP ALA ALA THR ALA GLU LYS VAL PHE LYS GLN TYR SEQRES 4 A 108 ALA ASN ASP ASN GLY VAL ASP GLY GLU TRP THR TYR ASP SEQRES 5 A 108 ASP ALA THR LYS THR PHE THR VAL THR GLU GLY SER GLN SEQRES 6 A 108 TRP GLN PRO GLN LEU GLN GLN LEU ARG ASP MET GLY ILE SEQRES 7 A 108 GLN ASP ASP GLU LEU SER LEU ARG ALA LEU GLN ALA THR SEQRES 8 A 108 GLY GLY ASP ILE GLN ALA ALA LEU GLU LEU ILE PHE ALA SEQRES 9 A 108 GLY GLY ALA PRO
HELIX 1 1 TRP A 66 ASP A 75 1 10 HELIX 2 2 ASP A 80 GLY A 92 1 13 HELIX 3 3 ASP A 94 GLY A 105 1 12
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000