10 20 30 40 50 60 70 80 2CW3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER OXIDOREDUCTASE 16-JUN-05 2CW3
TITLE X-RAY STRUCTURE OF PMSOD2, SUPEROXIDE DISMUTASE FROM TITLE 2 PERKINSUS MARINUS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PMSOD2; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PERKINSUS MARINUS; SOURCE 3 ORGANISM_TAXID: 31276; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS SOD, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR O.A.ASOJO,E.J.SCHOTT,G.R.VASTA,A.M.SILVA
REVDAT 3 24-FEB-09 2CW3 1 VERSN REVDAT 2 21-NOV-06 2CW3 1 JRNL AUTHOR REVDAT 1 04-JUL-06 2CW3 0
JRNL AUTH O.A.ASOJO,E.J.SCHOTT,G.R.VASTA,A.M.SILVA JRNL TITL STRUCTURES OF PMSOD1 AND PMSOD2, TWO SUPEROXIDE JRNL TITL 2 DISMUTASES FROM THE PROTOZOAN PARASITE PERKINSUS JRNL TITL 3 MARINUS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 62 1072 2006 JRNL REFN ESSN 1744-3091 JRNL PMID 17077482 JRNL DOI 10.1107/S1744309106040425
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 14180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3209 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.549 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3317 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4508 ; 1.408 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 5.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;33.519 ;22.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;18.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.185 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2578 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1759 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2234 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 189 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.247 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2012 ; 0.693 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3155 ; 1.178 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1551 ; 1.610 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1353 ; 2.509 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2CW3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024689.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17174 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17M SODIUM ACETATE TRIHYDRATE, REMARK 280 0.085M TRIS HYDROCHLORIDE AT PH 8.5, 25.5% W/V PEG 4000 AND REMARK 280 15% GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.71500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.26500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.94700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.26500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.71500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.94700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -71 REMARK 465 ARG A -70 REMARK 465 LEU A -69 REMARK 465 SER A -68 REMARK 465 GLY A -67 REMARK 465 SER A -66 REMARK 465 ASP A -65 REMARK 465 GLY A -64 REMARK 465 ARG A -63 REMARK 465 ARG A -62 REMARK 465 LEU A -61 REMARK 465 THR A -60 REMARK 465 TYR A -59 REMARK 465 ARG A -58 REMARK 465 THR A -57 REMARK 465 SER A -56 REMARK 465 PRO A -55 REMARK 465 ARG A -54 REMARK 465 VAL A -53 REMARK 465 ARG A -52 REMARK 465 ALA A -51 REMARK 465 SER A -50 REMARK 465 LEU A -49 REMARK 465 LEU A -48 REMARK 465 LEU A -47 REMARK 465 LEU A -46 REMARK 465 GLY A -45 REMARK 465 ALA A -44 REMARK 465 ILE A -43 REMARK 465 VAL A -42 REMARK 465 LEU A -41 REMARK 465 LEU A -40 REMARK 465 VAL A -39 REMARK 465 TYR A -38 REMARK 465 PHE A -37 REMARK 465 ALA A -36 REMARK 465 GLU A -35 REMARK 465 THR A -34 REMARK 465 LEU A -33 REMARK 465 PHE A -32 REMARK 465 VAL A -31 REMARK 465 VAL A -30 REMARK 465 CYS A -29 REMARK 465 ARG A -28 REMARK 465 GLY A -27 REMARK 465 SER A -26 REMARK 465 MET A -25 REMARK 465 ASP A -24 REMARK 465 SER A -23 REMARK 465 ARG A -22 REMARK 465 ALA A -21 REMARK 465 VAL A -20 REMARK 465 ARG A -19 REMARK 465 HIS A -18 REMARK 465 ALA A -17 REMARK 465 ILE A -16 REMARK 465 PRO A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 LYS A -12 REMARK 465 GLY A -11 REMARK 465 LEU A -10 REMARK 465 ARG A -9 REMARK 465 ALA A -8 REMARK 465 LYS A -7 REMARK 465 PRO A -6 REMARK 465 PHE A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 SER A -2 REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 VAL A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 204 REMARK 465 SER A 205 REMARK 465 ASP A 206 REMARK 465 ILE A 207 REMARK 465 GLU A 208 REMARK 465 MET B -71 REMARK 465 ARG B -70 REMARK 465 LEU B -69 REMARK 465 SER B -68 REMARK 465 GLY B -67 REMARK 465 SER B -66 REMARK 465 ASP B -65 REMARK 465 GLY B -64 REMARK 465 ARG B -63 REMARK 465 ARG B -62 REMARK 465 LEU B -61 REMARK 465 THR B -60 REMARK 465 TYR B -59 REMARK 465 ARG B -58 REMARK 465 THR B -57 REMARK 465 SER B -56 REMARK 465 PRO B -55 REMARK 465 ARG B -54 REMARK 465 VAL B -53 REMARK 465 ARG B -52 REMARK 465 ALA B -51 REMARK 465 SER B -50 REMARK 465 LEU B -49 REMARK 465 LEU B -48 REMARK 465 LEU B -47 REMARK 465 LEU B -46 REMARK 465 GLY B -45 REMARK 465 ALA B -44 REMARK 465 ILE B -43 REMARK 465 VAL B -42 REMARK 465 LEU B -41 REMARK 465 LEU B -40 REMARK 465 VAL B -39 REMARK 465 TYR B -38 REMARK 465 PHE B -37 REMARK 465 ALA B -36 REMARK 465 GLU B -35 REMARK 465 THR B -34 REMARK 465 LEU B -33 REMARK 465 PHE B -32 REMARK 465 VAL B -31 REMARK 465 VAL B -30 REMARK 465 CYS B -29 REMARK 465 ARG B -28 REMARK 465 GLY B -27 REMARK 465 SER B -26 REMARK 465 MET B -25 REMARK 465 ASP B -24 REMARK 465 SER B -23 REMARK 465 ARG B -22 REMARK 465 ALA B -21 REMARK 465 VAL B -20 REMARK 465 ARG B -19 REMARK 465 HIS B -18 REMARK 465 ALA B -17 REMARK 465 ILE B -16 REMARK 465 PRO B -15 REMARK 465 SER B -14 REMARK 465 GLY B -13 REMARK 465 LYS B -12 REMARK 465 GLY B -11 REMARK 465 LEU B -10 REMARK 465 ARG B -9 REMARK 465 ALA B -8 REMARK 465 LYS B -7 REMARK 465 PRO B -6 REMARK 465 PHE B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 SER B -2 REMARK 465 ARG B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 VAL B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 GLY B 7 REMARK 465 PRO B 204 REMARK 465 SER B 205 REMARK 465 ASP B 206 REMARK 465 ILE B 207 REMARK 465 GLU B 208
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 4 CB CG CD REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LEU B 8 CG CD1 CD2 REMARK 470 LYS B 162 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 580 O HOH B 626 1.97 REMARK 500 O LEU B 203 O HOH B 617 2.04 REMARK 500 O HOH A 585 O HOH A 612 2.09 REMARK 500 O HOH A 538 O HOH A 603 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 6 -157.61 -82.68 REMARK 500 ARG A 9 74.46 -116.80 REMARK 500 LYS A 34 -74.64 -102.19 REMARK 500 PRO A 90 -179.05 -67.29 REMARK 500 ASP A 151 -102.79 55.79 REMARK 500 GLN A 180 -130.33 50.36 REMARK 500 ARG B 9 77.45 50.48 REMARK 500 MET B 10 -159.62 -147.01 REMARK 500 SER B 94 172.77 -59.07 REMARK 500 ASP B 151 -109.41 53.48 REMARK 500 GLN B 180 -128.96 43.89 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 542 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A 569 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH B 587 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH A 581 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH B 628 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH A 621 DISTANCE = 5.10 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 524 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 31 NE2 REMARK 620 2 HIS A 81 NE2 88.6 REMARK 620 3 ASP A 169 OD1 86.7 107.9 REMARK 620 4 HIS A 173 NE2 99.5 134.8 116.9 REMARK 620 5 HOH A 622 O 163.0 93.6 76.6 90.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 539 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 31 NE2 REMARK 620 2 HIS B 81 NE2 93.8 REMARK 620 3 ASP B 169 OD1 81.3 115.7 REMARK 620 4 HIS B 173 NE2 90.2 135.5 108.7 REMARK 620 5 HOH B 540 O 165.8 99.5 88.5 83.8 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 524 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 539
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CW2 RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE 1
DBREF 2CW3 A -71 208 UNP Q8ISI9 Q8ISI9_9ALVE 1 280 DBREF 2CW3 B -71 208 UNP Q8ISI9 Q8ISI9_9ALVE 1 280
SEQRES 1 A 280 MET ARG LEU SER GLY SER ASP GLY ARG ARG LEU THR TYR SEQRES 2 A 280 ARG THR SER PRO ARG VAL ARG ALA SER LEU LEU LEU LEU SEQRES 3 A 280 GLY ALA ILE VAL LEU LEU VAL TYR PHE ALA GLU THR LEU SEQRES 4 A 280 PHE VAL VAL CYS ARG GLY SER MET ASP SER ARG ALA VAL SEQRES 5 A 280 ARG HIS ALA ILE PRO SER GLY LYS GLY LEU ARG ALA LYS SEQRES 6 A 280 PRO PHE VAL PRO SER ARG SER GLY VAL ALA PRO SER SER SEQRES 7 A 280 GLY LEU ARG MET THR LEU PRO TYR GLY LEU GLU ALA LEU SEQRES 8 A 280 GLU PRO VAL ILE SER ALA ALA THR VAL ASP PHE HIS TYR SEQRES 9 A 280 ASN LYS HIS HIS GLN GLY TYR ILE GLN LYS LEU LEU ASP SEQRES 10 A 280 ALA THR GLY LEU PRO GLU SER ARG ILE ASN LEU LYS SER SEQRES 11 A 280 LEU VAL THR LEU GLY PRO ASP ARG ALA GLY GLU ASN VAL SEQRES 12 A 280 PHE ASN ALA ALA GLY GLN ILE TYR ASN HIS ASN MET TYR SEQRES 13 A 280 TRP LEU SER MET VAL PRO THR SER GLY SER GLY ARG HIS SEQRES 14 A 280 VAL PRO PRO ARG LEU LEU LYS LEU ILE ARG ALA ARG TRP SEQRES 15 A 280 GLY ASN VAL ASP GLU MET LYS GLU ASN PHE MET ARG LYS SEQRES 16 A 280 ALA THR ALA LEU PHE GLY SER GLY TRP ILE TRP LEU VAL SEQRES 17 A 280 TRP ASP THR ARG GLU ARG ARG LEU ASP LEU VAL GLY THR SEQRES 18 A 280 LYS ASP ALA HIS SER PRO LEU SER GLU ASP ALA GLY LYS SEQRES 19 A 280 ILE PRO LEU PHE THR CYS ASP VAL TRP GLU HIS ALA TYR SEQRES 20 A 280 TYR LEU ASP TYR GLN HIS ASP ARG ALA ALA TYR LEU THR SEQRES 21 A 280 ARG TRP TRP SER LEU ILE ASN TRP GLU PHE ALA ASP SER SEQRES 22 A 280 ASN LEU PRO SER ASP ILE GLU SEQRES 1 B 280 MET ARG LEU SER GLY SER ASP GLY ARG ARG LEU THR TYR SEQRES 2 B 280 ARG THR SER PRO ARG VAL ARG ALA SER LEU LEU LEU LEU SEQRES 3 B 280 GLY ALA ILE VAL LEU LEU VAL TYR PHE ALA GLU THR LEU SEQRES 4 B 280 PHE VAL VAL CYS ARG GLY SER MET ASP SER ARG ALA VAL SEQRES 5 B 280 ARG HIS ALA ILE PRO SER GLY LYS GLY LEU ARG ALA LYS SEQRES 6 B 280 PRO PHE VAL PRO SER ARG SER GLY VAL ALA PRO SER SER SEQRES 7 B 280 GLY LEU ARG MET THR LEU PRO TYR GLY LEU GLU ALA LEU SEQRES 8 B 280 GLU PRO VAL ILE SER ALA ALA THR VAL ASP PHE HIS TYR SEQRES 9 B 280 ASN LYS HIS HIS GLN GLY TYR ILE GLN LYS LEU LEU ASP SEQRES 10 B 280 ALA THR GLY LEU PRO GLU SER ARG ILE ASN LEU LYS SER SEQRES 11 B 280 LEU VAL THR LEU GLY PRO ASP ARG ALA GLY GLU ASN VAL SEQRES 12 B 280 PHE ASN ALA ALA GLY GLN ILE TYR ASN HIS ASN MET TYR SEQRES 13 B 280 TRP LEU SER MET VAL PRO THR SER GLY SER GLY ARG HIS SEQRES 14 B 280 VAL PRO PRO ARG LEU LEU LYS LEU ILE ARG ALA ARG TRP SEQRES 15 B 280 GLY ASN VAL ASP GLU MET LYS GLU ASN PHE MET ARG LYS SEQRES 16 B 280 ALA THR ALA LEU PHE GLY SER GLY TRP ILE TRP LEU VAL SEQRES 17 B 280 TRP ASP THR ARG GLU ARG ARG LEU ASP LEU VAL GLY THR SEQRES 18 B 280 LYS ASP ALA HIS SER PRO LEU SER GLU ASP ALA GLY LYS SEQRES 19 B 280 ILE PRO LEU PHE THR CYS ASP VAL TRP GLU HIS ALA TYR SEQRES 20 B 280 TYR LEU ASP TYR GLN HIS ASP ARG ALA ALA TYR LEU THR SEQRES 21 B 280 ARG TRP TRP SER LEU ILE ASN TRP GLU PHE ALA ASP SER SEQRES 22 B 280 ASN LEU PRO SER ASP ILE GLU
HET FE A 524 1 HET FE B 539 1
HETNAM FE FE (III) ION
FORMUL 3 FE 2(FE 3+) FORMUL 5 HOH *202(H2 O)
HELIX 1 1 SER A 24 LYS A 34 1 11 HELIX 2 2 LYS A 34 GLY A 48 1 15 HELIX 3 3 PRO A 50 ILE A 54 5 5 HELIX 4 4 ASN A 55 GLY A 63 1 9 HELIX 5 5 GLY A 63 GLY A 68 1 6 HELIX 6 6 GLY A 68 SER A 87 1 20 HELIX 7 7 PRO A 99 GLY A 111 1 13 HELIX 8 8 ASN A 112 LEU A 127 1 16 HELIX 9 9 SER A 154 ASP A 159 1 6 HELIX 10 10 TRP A 171 ALA A 174 5 4 HELIX 11 11 TYR A 175 GLN A 180 1 6 HELIX 12 12 ASP A 182 SER A 192 1 11 HELIX 13 13 ASN A 195 ASN A 202 1 8 HELIX 14 14 SER B 24 LYS B 34 1 11 HELIX 15 15 LYS B 34 GLY B 48 1 15 HELIX 16 16 PRO B 50 ILE B 54 5 5 HELIX 17 17 ASN B 55 GLY B 68 1 14 HELIX 18 18 GLY B 68 SER B 87 1 20 HELIX 19 19 PRO B 90 SER B 94 5 5 HELIX 20 20 PRO B 99 GLY B 111 1 13 HELIX 21 21 ASN B 112 LEU B 127 1 16 HELIX 22 22 SER B 154 ASP B 159 1 6 HELIX 23 23 TRP B 171 ALA B 174 5 4 HELIX 24 24 TYR B 175 GLN B 180 1 6 HELIX 25 25 ASP B 182 TRP B 191 1 10 HELIX 26 26 SER B 192 ILE B 194 5 3 HELIX 27 27 ASN B 195 ASN B 202 1 8
SHEET 1 A 3 ARG A 143 LYS A 150 0 SHEET 2 A 3 GLY A 131 ASP A 138 -1 N TRP A 134 O VAL A 147 SHEET 3 A 3 LYS A 162 ASP A 169 -1 O LEU A 165 N LEU A 135 SHEET 1 B 3 ARG B 143 LYS B 150 0 SHEET 2 B 3 GLY B 131 ASP B 138 -1 N TRP B 134 O VAL B 147 SHEET 3 B 3 LYS B 162 ASP B 169 -1 O LEU B 165 N LEU B 135
LINK FE FE A 524 NE2 HIS A 31 1555 1555 1.93 LINK FE FE A 524 NE2 HIS A 81 1555 1555 1.89 LINK FE FE A 524 OD1 ASP A 169 1555 1555 2.01 LINK FE FE A 524 NE2 HIS A 173 1555 1555 1.87 LINK FE FE B 539 NE2 HIS B 31 1555 1555 1.90 LINK FE FE B 539 NE2 HIS B 81 1555 1555 1.90 LINK FE FE B 539 OD1 ASP B 169 1555 1555 2.04 LINK FE FE B 539 NE2 HIS B 173 1555 1555 1.89 LINK FE FE A 524 O HOH A 622 1555 1555 2.14 LINK FE FE B 539 O HOH B 540 1555 1555 2.38
CISPEP 1 GLU A 20 PRO A 21 0 0.56 CISPEP 2 ARG B 9 MET B 10 0 3.64 CISPEP 3 GLU B 20 PRO B 21 0 0.71
SITE 1 AC1 5 HIS A 31 HIS A 81 ASP A 169 HIS A 173 SITE 2 AC1 5 HOH A 622 SITE 1 AC2 5 HIS B 31 HIS B 81 ASP B 169 HIS B 173 SITE 2 AC2 5 HOH B 540
CRYST1 61.430 73.894 94.530 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016279 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013533 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010579 0.00000