10 20 30 40 50 60 70 80 2CW2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER OXIDOREDUCTASE 16-JUN-05 2CW2
TITLE CRYSTAL STRUCTURE OF SUPEROXIDE DISMUTASE FROM P. MARINUS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PERKINSUS MARINUS; SOURCE 3 ORGANISM_TAXID: 31276; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PBLUESCRIPTII
KEYWDS SOD, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR O.A.ASOJO,E.J.SCHOTT,G.R.VASTA,A.M.SILVA
REVDAT 3 24-FEB-09 2CW2 1 VERSN REVDAT 2 21-NOV-06 2CW2 1 JRNL AUTHOR REMARK REVDAT 1 04-JUL-06 2CW2 0
JRNL AUTH O.A.ASOJO,E.J.SCHOTT,G.R.VASTA,A.M.SILVA JRNL TITL STRUCTURES OF PMSOD1 AND PMSOD2, TWO SUPEROXIDE JRNL TITL 2 DISMUTASES FROM THE PROTOZOAN PARASITE PERKINSUS JRNL TITL 3 MARINUS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 62 1072 2006 JRNL REFN ESSN 1744-3091 JRNL PMID 17077482 JRNL DOI 10.1107/S1744309106040425
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 28859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1535 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.817 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3248 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4410 ; 1.313 ; 1.905 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 6.224 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2550 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1727 ; 0.279 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 510 ; 0.207 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.418 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 42 ; 0.216 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1961 ; 1.161 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3156 ; 1.920 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1287 ; 1.479 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1254 ; 2.160 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CW2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024688.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 56.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.22550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 LEU A -24 REMARK 465 SER A -23 REMARK 465 VAL A -22 REMARK 465 ALA A -21 REMARK 465 GLY A -20 REMARK 465 HIS A -19 REMARK 465 ARG A -18 REMARK 465 PHE A -17 REMARK 465 ALA A -16 REMARK 465 SER A -15 REMARK 465 LEU A -14 REMARK 465 ALA A -13 REMARK 465 THR A -12 REMARK 465 THR A -11 REMARK 465 PRO A -10 REMARK 465 VAL A -9 REMARK 465 LEU A -8 REMARK 465 ARG A -7 REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 LEU A -4 REMARK 465 ALA A -3 REMARK 465 ARG A -2 REMARK 465 CYS A -1 REMARK 465 PHE A 0 REMARK 465 SER A 1 REMARK 465 MET B -25 REMARK 465 LEU B -24 REMARK 465 SER B -23 REMARK 465 VAL B -22 REMARK 465 ALA B -21 REMARK 465 GLY B -20 REMARK 465 HIS B -19 REMARK 465 ARG B -18 REMARK 465 PHE B -17 REMARK 465 ALA B -16 REMARK 465 SER B -15 REMARK 465 LEU B -14 REMARK 465 ALA B -13 REMARK 465 THR B -12 REMARK 465 THR B -11 REMARK 465 PRO B -10 REMARK 465 VAL B -9 REMARK 465 LEU B -8 REMARK 465 ARG B -7 REMARK 465 MET B -6 REMARK 465 GLY B -5 REMARK 465 LEU B -4 REMARK 465 ALA B -3 REMARK 465 ARG B -2 REMARK 465 CYS B -1 REMARK 465 PHE B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 THR B 4
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 423 O HOH B 591 2.00 REMARK 500 OD2 ASP B 136 O HOH B 592 2.06 REMARK 500 CD GLU A 20 O HOH A 602 2.09 REMARK 500 NZ LYS A 198 O HOH A 593 2.10 REMARK 500 O HOH B 476 O HOH B 585 2.18 REMARK 500 O HOH B 566 O HOH B 590 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 105 NH2 ARG B 152 2556 1.89 REMARK 500 O GLU B 66 NH2 ARG B 105 2546 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 53 C ALA A 55 N 0.230 REMARK 500 ILE A 201 C ILE A 201 O 0.515 REMARK 500 ILE A 201 C ILE A 201 OXT -0.373 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 41 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 116 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ILE A 201 CA - C - O ANGL. DEV. = -25.7 DEGREES REMARK 500 LYS B 56 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 ASP B 106 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ILE B 201 CA - C - O ANGL. DEV. = -24.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 34 -65.64 -100.19 REMARK 500 ASP A 135 -84.81 -93.74 REMARK 500 ASP A 136 58.95 -115.10 REMARK 500 ASP A 146 -107.03 56.12 REMARK 500 ARG A 173 -126.64 49.06 REMARK 500 LYS B 34 -72.20 -103.84 REMARK 500 ASP B 146 -107.38 59.99 REMARK 500 ARG B 173 -129.97 49.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 154 LYS A 155 -142.46 REMARK 500 GLY A 200 ILE A 201 -148.36 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 31 NE2 REMARK 620 2 HIS A 80 NE2 92.5 REMARK 620 3 ASP A 162 OD2 86.7 115.7 REMARK 620 4 HIS A 166 NE2 91.8 126.3 117.9 REMARK 620 5 HOH A 505 O 175.0 87.8 88.6 92.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 31 NE2 REMARK 620 2 HIS B 80 NE2 90.5 REMARK 620 3 ASP B 162 OD2 85.3 113.0 REMARK 620 4 HIS B 166 NE2 90.9 130.3 116.6 REMARK 620 5 HOH B 497 O 177.6 91.1 92.5 89.4 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 402 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 403
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CW3 RELATED DB: PDB REMARK 900 IRON SUPEROXIDE DISMUTASE
DBREF 2CW2 A -25 201 UNP Q8ISJ0 Q8ISJ0_9ALVE 1 226 DBREF 2CW2 B -25 201 UNP Q8ISJ0 Q8ISJ0_9ALVE 1 226
SEQRES 1 A 226 MET LEU SER VAL ALA GLY HIS ARG PHE ALA SER LEU ALA SEQRES 2 A 226 THR THR PRO VAL LEU ARG MET GLY LEU ALA ARG CYS PHE SEQRES 3 A 226 SER SER VAL THR GLY PRO PHE GLN CYS PRO PRO LEU PRO SEQRES 4 A 226 TYR VAL LYS ASN ALA LEU GLU PRO HIS MET SER ALA GLU SEQRES 5 A 226 THR LEU THR TYR HIS HIS ASP LYS HIS HIS GLN THR TYR SEQRES 6 A 226 VAL ASP THR LEU ASN SER ILE ALA ALA GLU ASN SER THR SEQRES 7 A 226 ILE ALA SER LYS THR LEU GLU GLN ILE ILE LYS THR GLU SEQRES 8 A 226 THR GLY LYS PRO PHE ASN GLN ALA ALA GLN VAL TYR ASN SEQRES 9 A 226 HIS THR PHE PHE PHE ASN ASN LEU ALA PRO ASN GLY GLY SEQRES 10 A 226 GLY GLU PRO THR GLY LYS ILE ALA GLU LEU ILE THR ARG SEQRES 11 A 226 ASP PHE GLY SER PHE GLU LYS PHE LYS GLU ASP PHE SER SEQRES 12 A 226 ALA ALA ALA VAL GLY HIS PHE GLY SER GLY TRP VAL TRP SEQRES 13 A 226 LEU ILE ALA ASP ASP GLY LYS LEU LYS ILE VAL GLN GLY SEQRES 14 A 226 HIS ASP ALA GLY ASN PRO ILE ARG GLU SER LYS THR PRO SEQRES 15 A 226 LEU MET ASN ILE ASP VAL TRP GLU HIS ALA TYR TYR ILE SEQRES 16 A 226 ASP TYR ARG ASN ALA ARG ALA GLN TYR VAL LYS ASN TYR SEQRES 17 A 226 TRP ASN LEU VAL ASN TRP ASP PHE VAL ASN ASP ASN VAL SEQRES 18 A 226 ALA LYS ALA GLY ILE SEQRES 1 B 226 MET LEU SER VAL ALA GLY HIS ARG PHE ALA SER LEU ALA SEQRES 2 B 226 THR THR PRO VAL LEU ARG MET GLY LEU ALA ARG CYS PHE SEQRES 3 B 226 SER SER VAL THR GLY PRO PHE GLN CYS PRO PRO LEU PRO SEQRES 4 B 226 TYR VAL LYS ASN ALA LEU GLU PRO HIS MET SER ALA GLU SEQRES 5 B 226 THR LEU THR TYR HIS HIS ASP LYS HIS HIS GLN THR TYR SEQRES 6 B 226 VAL ASP THR LEU ASN SER ILE ALA ALA GLU ASN SER THR SEQRES 7 B 226 ILE ALA SER LYS THR LEU GLU GLN ILE ILE LYS THR GLU SEQRES 8 B 226 THR GLY LYS PRO PHE ASN GLN ALA ALA GLN VAL TYR ASN SEQRES 9 B 226 HIS THR PHE PHE PHE ASN ASN LEU ALA PRO ASN GLY GLY SEQRES 10 B 226 GLY GLU PRO THR GLY LYS ILE ALA GLU LEU ILE THR ARG SEQRES 11 B 226 ASP PHE GLY SER PHE GLU LYS PHE LYS GLU ASP PHE SER SEQRES 12 B 226 ALA ALA ALA VAL GLY HIS PHE GLY SER GLY TRP VAL TRP SEQRES 13 B 226 LEU ILE ALA ASP ASP GLY LYS LEU LYS ILE VAL GLN GLY SEQRES 14 B 226 HIS ASP ALA GLY ASN PRO ILE ARG GLU SER LYS THR PRO SEQRES 15 B 226 LEU MET ASN ILE ASP VAL TRP GLU HIS ALA TYR TYR ILE SEQRES 16 B 226 ASP TYR ARG ASN ALA ARG ALA GLN TYR VAL LYS ASN TYR SEQRES 17 B 226 TRP ASN LEU VAL ASN TRP ASP PHE VAL ASN ASP ASN VAL SEQRES 18 B 226 ALA LYS ALA GLY ILE
HET FE A 402 1 HET FE B 403 1
HETNAM FE FE (III) ION
FORMUL 3 FE 2(FE 3+) FORMUL 5 HOH *409(H2 O)
HELIX 1 1 SER A 24 LYS A 34 1 11 HELIX 2 2 LYS A 34 ALA A 48 1 15 HELIX 3 3 ASN A 50 LYS A 57 1 7 HELIX 4 4 THR A 58 GLU A 66 1 9 HELIX 5 5 THR A 67 ASN A 86 1 20 HELIX 6 6 THR A 96 GLY A 108 1 13 HELIX 7 7 SER A 109 HIS A 124 1 16 HELIX 8 8 ASN A 149 GLU A 153 5 5 HELIX 9 9 TRP A 164 ALA A 167 5 4 HELIX 10 10 TYR A 168 ARG A 173 1 6 HELIX 11 11 ALA A 175 TRP A 184 1 10 HELIX 12 12 ASN A 188 ALA A 199 1 12 HELIX 13 13 SER B 24 LYS B 34 1 11 HELIX 14 14 LYS B 34 ASN B 50 1 17 HELIX 15 15 ASN B 50 SER B 55 1 6 HELIX 16 16 THR B 58 GLU B 66 1 9 HELIX 17 17 THR B 67 ASN B 86 1 20 HELIX 18 18 THR B 96 GLY B 108 1 13 HELIX 19 19 SER B 109 HIS B 124 1 16 HELIX 20 20 ASN B 149 SER B 154 5 6 HELIX 21 21 TRP B 164 ALA B 167 5 4 HELIX 22 22 TYR B 168 ARG B 173 1 6 HELIX 23 23 ALA B 175 TRP B 184 1 10 HELIX 24 24 ASN B 188 GLY B 200 1 13
SHEET 1 A 3 LEU A 139 HIS A 145 0 SHEET 2 A 3 GLY A 128 ALA A 134 -1 N TRP A 131 O VAL A 142 SHEET 3 A 3 THR A 156 ASP A 162 -1 O LEU A 158 N LEU A 132 SHEET 1 B 3 LYS B 138 HIS B 145 0 SHEET 2 B 3 GLY B 128 ASP B 135 -1 N TRP B 131 O VAL B 142 SHEET 3 B 3 THR B 156 ASP B 162 -1 O LEU B 158 N LEU B 132
LINK FE FE A 402 NE2 HIS A 31 1555 1555 1.94 LINK FE FE A 402 NE2 HIS A 80 1555 1555 1.95 LINK FE FE A 402 OD2 ASP A 162 1555 1555 2.02 LINK FE FE A 402 NE2 HIS A 166 1555 1555 1.93 LINK FE FE B 403 NE2 HIS B 31 1555 1555 1.93 LINK FE FE B 403 NE2 HIS B 80 1555 1555 1.92 LINK FE FE B 403 OD2 ASP B 162 1555 1555 2.03 LINK FE FE B 403 NE2 HIS B 166 1555 1555 1.93 LINK FE FE A 402 O HOH A 505 1555 1555 2.35 LINK FE FE B 403 O HOH B 497 1555 1555 2.24
CISPEP 1 GLY A 5 PRO A 6 0 3.56 CISPEP 2 GLU A 20 PRO A 21 0 4.15 CISPEP 3 GLY B 5 PRO B 6 0 0.87 CISPEP 4 GLU B 20 PRO B 21 0 4.35
SITE 1 AC1 5 HIS A 31 HIS A 80 ASP A 162 HIS A 166 SITE 2 AC1 5 HOH A 505 SITE 1 AC2 5 HIS B 31 HIS B 80 ASP B 162 HIS B 166 SITE 2 AC2 5 HOH B 497
CRYST1 53.813 62.451 57.354 90.00 95.54 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018583 0.000000 0.001802 0.00000
SCALE2 0.000000 0.016013 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017517 0.00000