10 20 30 40 50 60 70 80 2CUP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 27-MAY-05 2CUP
TITLE SOLUTION STRUCTURE OF THE SKELETAL MUSCLE LIM-PROTEIN 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SKELETAL MUSCLE LIM-PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ONE AND A HALF LIM DOMAIN; COMPND 5 SYNONYM: SLIM 1, SLIM, FOUR AND A HALF LIM DOMAINS PROTEIN COMPND 6 1, FHL-1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FHL 1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: 040816-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS FOUR AND HALF LIM DOMAINS PROTEIN 1, LIM DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.N.NIRAULA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2CUP 1 VERSN REVDAT 1 27-NOV-05 2CUP 0
JRNL AUTH T.N.NIRAULA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SKELETAL MUSCLE JRNL TITL 2 LIM-PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CUP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024640.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.40MM PROTEIN U-13C 15N; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 0.01MM ZNCL2; 90% H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.913, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 -47.61 -133.07 REMARK 500 1 PHE A 34 104.98 -59.61 REMARK 500 1 THR A 62 175.23 -48.11 REMARK 500 1 SER A 66 161.62 -44.25 REMARK 500 1 TYR A 85 -77.07 -126.34 REMARK 500 1 LYS A 92 -36.93 -38.43 REMARK 500 1 SER A 96 78.84 -108.43 REMARK 500 1 PRO A 98 2.55 -69.74 REMARK 500 2 ARG A 12 32.73 37.60 REMARK 500 2 ARG A 63 128.90 -35.60 REMARK 500 2 SER A 66 145.82 -33.95 REMARK 500 2 PRO A 67 -179.42 -69.70 REMARK 500 2 PHE A 73 51.49 73.74 REMARK 500 2 TYR A 85 -72.02 -98.13 REMARK 500 2 LYS A 92 -29.38 -36.54 REMARK 500 2 SER A 96 -60.41 -123.23 REMARK 500 2 SER A 100 145.40 -35.64 REMARK 500 3 ARG A 12 28.53 46.32 REMARK 500 3 ASP A 65 51.06 39.10 REMARK 500 3 PHE A 73 51.41 71.78 REMARK 500 3 LYS A 92 -36.59 -36.69 REMARK 500 4 ARG A 12 37.99 30.99 REMARK 500 4 PHE A 34 99.51 -59.39 REMARK 500 4 ASP A 65 76.57 -100.68 REMARK 500 4 LYS A 92 -31.96 -34.45 REMARK 500 4 SER A 96 55.80 -97.73 REMARK 500 4 SER A 99 39.26 37.73 REMARK 500 5 SER A 5 -62.75 -100.28 REMARK 500 5 SER A 6 102.66 -55.14 REMARK 500 5 ARG A 12 37.94 39.94 REMARK 500 5 PHE A 34 98.74 -55.70 REMARK 500 5 CYS A 36 172.60 -59.05 REMARK 500 5 THR A 61 -31.63 -38.08 REMARK 500 5 ARG A 63 115.52 -39.40 REMARK 500 5 ASP A 65 39.58 -85.81 REMARK 500 5 TYR A 85 -80.80 -123.61 REMARK 500 6 SER A 5 44.30 -100.67 REMARK 500 6 ASP A 65 44.67 73.77 REMARK 500 6 SER A 66 139.91 -37.48 REMARK 500 6 PHE A 73 49.00 74.22 REMARK 500 6 GLN A 81 147.59 -39.79 REMARK 500 6 TYR A 85 -77.34 -114.24 REMARK 500 6 HIS A 91 158.14 -49.73 REMARK 500 6 SER A 99 144.91 -171.77 REMARK 500 7 PHE A 34 97.01 -58.48 REMARK 500 7 ASP A 65 87.28 -57.83 REMARK 500 7 SER A 66 157.27 -37.50 REMARK 500 7 PRO A 67 -175.87 -69.79 REMARK 500 7 LYS A 92 -31.47 -34.74 REMARK 500 8 ARG A 12 42.63 31.50 REMARK 500 8 PHE A 73 43.95 71.83 REMARK 500 8 ASP A 80 172.59 -49.56 REMARK 500 8 TYR A 85 -74.87 -128.11 REMARK 500 8 HIS A 91 161.46 -39.99 REMARK 500 9 PHE A 34 101.53 -56.34 REMARK 500 9 THR A 61 -39.94 -37.71 REMARK 500 9 ASP A 65 69.40 -69.68 REMARK 500 9 PHE A 73 45.96 75.07 REMARK 500 9 SER A 96 46.16 -92.59 REMARK 500 10 PHE A 34 107.77 -55.74 REMARK 500 10 CYS A 60 -74.04 -76.19 REMARK 500 10 LYS A 92 -36.67 -32.89 REMARK 500 11 SER A 2 48.74 -84.32 REMARK 500 11 SER A 5 159.73 -47.94 REMARK 500 11 ARG A 12 26.83 47.74 REMARK 500 11 PHE A 34 98.61 -61.75 REMARK 500 11 THR A 61 -35.57 -38.94 REMARK 500 11 TYR A 85 68.31 -117.11 REMARK 500 11 LYS A 92 -33.43 -39.63 REMARK 500 12 PHE A 34 97.99 -58.72 REMARK 500 12 GLU A 64 35.52 -95.35 REMARK 500 12 ASP A 65 76.82 -103.93 REMARK 500 12 PHE A 73 47.88 71.55 REMARK 500 12 TYR A 85 -80.53 -128.41 REMARK 500 12 LYS A 92 -31.97 -38.11 REMARK 500 12 PRO A 98 8.29 -69.73 REMARK 500 12 SER A 100 141.94 -35.13 REMARK 500 13 SER A 2 42.76 37.69 REMARK 500 13 ARG A 12 27.03 47.83 REMARK 500 13 LYS A 92 -33.70 -33.89 REMARK 500 14 ASP A 52 41.64 72.47 REMARK 500 14 THR A 61 -38.54 -39.62 REMARK 500 14 THR A 62 136.44 -37.35 REMARK 500 14 TYR A 85 74.16 -119.76 REMARK 500 14 SER A 99 42.96 -92.54 REMARK 500 15 PHE A 34 99.45 -69.64 REMARK 500 15 CYS A 60 -63.63 -91.89 REMARK 500 15 THR A 62 143.15 -38.48 REMARK 500 15 SER A 66 133.86 -171.12 REMARK 500 15 PHE A 73 50.92 72.12 REMARK 500 15 LYS A 92 -32.93 -34.33 REMARK 500 15 SER A 100 -55.51 -130.07 REMARK 500 16 SER A 6 79.62 -105.90 REMARK 500 16 LYS A 20 105.03 -59.21 REMARK 500 16 THR A 61 -27.17 -38.32 REMARK 500 16 GLU A 64 158.31 -49.85 REMARK 500 16 ASP A 65 41.64 -86.80 REMARK 500 16 TYR A 85 -78.79 -114.67 REMARK 500 16 LYS A 92 -38.00 -33.63 REMARK 500 16 SER A 100 137.00 -35.20 REMARK 500 17 SER A 5 45.55 -83.27 REMARK 500 17 SER A 6 -63.56 -99.17 REMARK 500 17 ARG A 12 25.46 46.46 REMARK 500 17 PHE A 34 109.38 -59.92 REMARK 500 17 LEU A 43 32.49 -98.35 REMARK 500 17 ASP A 65 76.46 -60.07 REMARK 500 17 TYR A 85 -77.88 -114.55 REMARK 500 17 HIS A 91 160.21 -49.16 REMARK 500 18 ARG A 12 39.23 36.85 REMARK 500 18 ASN A 26 26.89 48.76 REMARK 500 18 THR A 47 156.86 -46.03 REMARK 500 18 ALA A 78 -74.72 -52.00 REMARK 500 18 SER A 99 135.97 -37.51 REMARK 500 18 SER A 100 150.63 -36.46 REMARK 500 19 ARG A 12 36.40 31.71 REMARK 500 19 PHE A 34 100.94 -59.05 REMARK 500 19 PHE A 73 52.56 73.59 REMARK 500 19 SER A 99 49.12 -83.04 REMARK 500 20 PHE A 34 103.24 -55.89 REMARK 500 20 CYS A 60 -70.29 -84.43 REMARK 500 20 THR A 62 -179.81 -49.34 REMARK 500 20 ARG A 63 172.65 -47.80 REMARK 500 20 SER A 66 138.77 -34.81 REMARK 500 20 GLN A 81 120.78 -36.28 REMARK 500 20 LYS A 92 -31.04 -36.03 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 8 SG REMARK 620 2 CYS A 11 SG 95.5 REMARK 620 3 HIS A 30 ND1 110.9 87.1 REMARK 620 4 CYS A 33 SG 117.6 120.1 119.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 36 SG REMARK 620 2 CYS A 39 SG 102.5 REMARK 620 3 CYS A 57 SG 114.9 101.7 REMARK 620 4 CYS A 60 SG 115.5 117.3 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 69 SG REMARK 620 2 CYS A 72 SG 108.0 REMARK 620 3 HIS A 91 ND1 106.1 86.7 REMARK 620 4 CYS A 94 SG 117.0 116.9 117.8 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003796.2 RELATED DB: TARGETDB
DBREF 2CUP A 8 95 UNP Q13642 FHL1_HUMAN 39 126
SEQADV 2CUP GLY A 1 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP SER A 2 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP SER A 3 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP GLY A 4 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP SER A 5 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP SER A 6 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP GLY A 7 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP SER A 96 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP GLY A 97 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP PRO A 98 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP SER A 99 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP SER A 100 UNP Q13642 CLONING ARTIFACT SEQADV 2CUP GLY A 101 UNP Q13642 CLONING ARTIFACT
SEQRES 1 A 101 GLY SER SER GLY SER SER GLY CYS VAL GLU CYS ARG LYS SEQRES 2 A 101 PRO ILE GLY ALA ASP SER LYS GLU VAL HIS TYR LYS ASN SEQRES 3 A 101 ARG PHE TRP HIS ASP THR CYS PHE ARG CYS ALA LYS CYS SEQRES 4 A 101 LEU HIS PRO LEU ALA ASN GLU THR PHE VAL ALA LYS ASP SEQRES 5 A 101 ASN LYS ILE LEU CYS ASN LYS CYS THR THR ARG GLU ASP SEQRES 6 A 101 SER PRO LYS CYS LYS GLY CYS PHE LYS ALA ILE VAL ALA SEQRES 7 A 101 GLY ASP GLN ASN VAL GLU TYR LYS GLY THR VAL TRP HIS SEQRES 8 A 101 LYS ASP CYS PHE SER GLY PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1 HET ZN A 601 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 3(ZN 2+)
HELIX 1 1 CYS A 57 THR A 62 1 6
SHEET 1 A 2 GLU A 21 TYR A 24 0 SHEET 2 A 2 ARG A 27 HIS A 30 -1 O TRP A 29 N VAL A 22 SHEET 1 B 2 VAL A 49 LYS A 51 0 SHEET 2 B 2 LYS A 54 LEU A 56 -1 O LEU A 56 N VAL A 49 SHEET 1 C 2 ASN A 82 GLU A 84 0 SHEET 2 C 2 VAL A 89 HIS A 91 -1 O TRP A 90 N VAL A 83
LINK ZN ZN A 201 SG CYS A 8 1555 1555 2.37 LINK ZN ZN A 201 SG CYS A 11 1555 1555 2.32 LINK ZN ZN A 201 ND1 HIS A 30 1555 1555 2.32 LINK ZN ZN A 201 SG CYS A 33 1555 1555 2.31 LINK ZN ZN A 401 SG CYS A 36 1555 1555 2.37 LINK ZN ZN A 401 SG CYS A 39 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 57 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 60 1555 1555 2.34 LINK ZN ZN A 601 SG CYS A 69 1555 1555 2.33 LINK ZN ZN A 601 SG CYS A 72 1555 1555 2.33 LINK ZN ZN A 601 ND1 HIS A 91 1555 1555 2.34 LINK ZN ZN A 601 SG CYS A 94 1555 1555 2.34
SITE 1 AC1 4 CYS A 8 CYS A 11 HIS A 30 CYS A 33 SITE 1 AC2 4 CYS A 36 CYS A 39 CYS A 57 CYS A 60 SITE 1 AC3 4 CYS A 69 CYS A 72 HIS A 91 CYS A 94
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000