10 20 30 40 50 60 70 80 2CTK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN, RNA BINDING PROTEIN 24-MAY-05 2CTK
TITLE SOLUTION STRUCTURE OF THE 12TH KH TYPE I DOMAIN FROM HUMAN TITLE 2 VIGILIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIGILIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KH DOMAIN; COMPND 5 SYNONYM: HIGH DENSITY LIPOPROTEIN-BINDING PROTEIN, HDL- COMPND 6 BINDING PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDLBP; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050131-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS K HOMOLOGY TYPE I DOMAIN, RNA-BINDING, CELL STEROL KEYWDS 2 METABOLISM, BETA-ALPHA-ALPHA-BETA-BETA-ALPHA STRUCTURE, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 4 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSPORT PROTEIN, KEYWDS 6 RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2CTK 1 VERSN REVDAT 1 24-NOV-05 2CTK 0
JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 12TH KH TYPE I DOMAIN JRNL TITL 2 FROM HUMAN VIGILIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CTK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024604.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.28MM KH DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 -178.93 -69.76 REMARK 500 1 ARG A 29 -35.63 -39.85 REMARK 500 1 ALA A 68 -34.08 -39.87 REMARK 500 1 ARG A 95 75.77 -66.61 REMARK 500 1 PHE A 97 99.72 -45.95 REMARK 500 2 SER A 2 78.49 -69.80 REMARK 500 2 LEU A 11 -176.28 -171.70 REMARK 500 2 GLU A 12 112.51 -165.17 REMARK 500 2 SER A 37 -62.66 -96.68 REMARK 500 2 GLU A 88 -70.07 -90.27 REMARK 500 3 ALA A 10 107.49 -170.50 REMARK 500 3 ALA A 68 -36.49 -36.65 REMARK 500 3 ARG A 95 138.66 -36.34 REMARK 500 3 SER A 96 85.03 -66.04 REMARK 500 3 PHE A 97 141.50 -36.68 REMARK 500 3 LYS A 98 108.43 -167.76 REMARK 500 3 SER A 102 41.52 38.64 REMARK 500 4 ALA A 68 -36.39 -36.63 REMARK 500 4 LEU A 94 -38.55 -37.86 REMARK 500 5 ALA A 10 119.09 -164.36 REMARK 500 6 PRO A 16 -179.20 -69.70 REMARK 500 6 ARG A 29 -38.30 -39.42 REMARK 500 6 PHE A 97 155.00 -45.90 REMARK 500 7 SER A 2 125.86 -173.10 REMARK 500 7 ALA A 10 108.24 -171.56 REMARK 500 7 GLN A 34 179.18 -49.98 REMARK 500 7 LYS A 35 89.39 -46.69 REMARK 500 7 GLU A 47 53.86 36.83 REMARK 500 7 GLU A 88 -65.57 -92.78 REMARK 500 7 SER A 99 96.07 -53.30 REMARK 500 8 ALA A 13 142.34 -170.38 REMARK 500 8 ALA A 68 -34.90 -36.16 REMARK 500 9 SER A 2 111.14 -161.01 REMARK 500 9 GLU A 9 136.91 -170.63 REMARK 500 9 ALA A 10 115.39 -161.45 REMARK 500 9 LYS A 35 50.13 38.40 REMARK 500 9 PHE A 97 136.86 -39.00 REMARK 500 9 PRO A 101 2.20 -69.77 REMARK 500 10 ALA A 10 120.16 -175.01 REMARK 500 10 PRO A 16 -178.17 -69.73 REMARK 500 10 LYS A 35 -53.50 -126.03 REMARK 500 10 ALA A 68 -26.33 -39.26 REMARK 500 10 ARG A 95 39.90 70.77 REMARK 500 10 PHE A 97 121.76 -34.99 REMARK 500 10 PRO A 101 0.88 -69.77 REMARK 500 11 SER A 3 177.70 -52.44 REMARK 500 11 PRO A 16 -178.76 -69.75 REMARK 500 11 SER A 99 139.88 -173.75 REMARK 500 12 SER A 3 95.91 -47.34 REMARK 500 12 ALA A 10 108.92 -167.66 REMARK 500 12 PRO A 16 -175.72 -69.70 REMARK 500 12 LYS A 35 -63.43 -107.33 REMARK 500 12 ALA A 68 -31.26 -36.48 REMARK 500 12 GLU A 88 -71.83 -89.21 REMARK 500 12 ARG A 95 37.35 39.10 REMARK 500 12 PHE A 97 39.61 38.32 REMARK 500 12 SER A 99 40.05 -107.35 REMARK 500 13 ALA A 13 136.40 -170.66 REMARK 500 13 PRO A 16 -177.92 -69.76 REMARK 500 13 ALA A 68 -29.70 -38.75 REMARK 500 13 PRO A 101 -174.38 -69.79 REMARK 500 14 PRO A 16 -171.35 -69.77 REMARK 500 14 LYS A 35 52.61 38.74 REMARK 500 14 SER A 37 -60.88 -90.64 REMARK 500 14 ALA A 54 163.48 -48.32 REMARK 500 14 GLN A 58 47.05 38.42 REMARK 500 14 GLU A 88 -72.76 -86.59 REMARK 500 14 GLN A 89 -33.56 -39.15 REMARK 500 14 SER A 96 41.97 -87.23 REMARK 500 15 LYS A 8 -56.54 -125.20 REMARK 500 15 ALA A 10 118.32 -167.02 REMARK 500 15 ALA A 13 122.67 -174.88 REMARK 500 15 GLU A 88 -71.18 -91.66 REMARK 500 15 PRO A 101 2.87 -69.85 REMARK 500 16 PRO A 16 -175.09 -69.82 REMARK 500 16 MET A 43 -30.25 -39.87 REMARK 500 16 GLN A 58 52.00 37.89 REMARK 500 16 ALA A 68 -32.30 -36.96 REMARK 500 16 GLU A 88 -72.85 -84.61 REMARK 500 16 PRO A 101 1.66 -69.80 REMARK 500 17 SER A 5 120.37 -173.74 REMARK 500 17 LYS A 8 106.51 -56.38 REMARK 500 17 ALA A 68 -39.56 -36.37 REMARK 500 17 GLU A 88 -71.91 -90.17 REMARK 500 17 ASP A 91 -39.42 -35.49 REMARK 500 17 PHE A 97 109.83 -38.63 REMARK 500 17 SER A 99 91.97 -48.20 REMARK 500 17 SER A 103 150.44 -43.95 REMARK 500 18 GLU A 9 108.08 -170.37 REMARK 500 18 PRO A 16 -176.94 -69.83 REMARK 500 18 GLU A 47 28.75 49.95 REMARK 500 18 PHE A 97 139.69 -37.61 REMARK 500 19 PRO A 16 -178.93 -69.80 REMARK 500 19 GLN A 58 44.77 38.88 REMARK 500 19 ALA A 68 -38.60 -36.65 REMARK 500 19 SER A 103 46.79 35.32 REMARK 500 20 SER A 6 157.88 -49.82 REMARK 500 20 ALA A 10 115.05 -169.43 REMARK 500 20 ALA A 68 -35.46 -39.71 REMARK 500 20 GLU A 88 -72.56 -91.78 REMARK 500 20 ARG A 95 130.50 -38.79 REMARK 500 20 SER A 102 116.93 -172.58 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000906.1 RELATED DB: TARGETDB
DBREF 2CTK A 8 98 UNP Q00341 VIGLN_HUMAN 964 1054
SEQADV 2CTK GLY A 1 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK SER A 2 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK SER A 3 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK GLY A 4 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK SER A 5 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK SER A 6 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK GLY A 7 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK SER A 99 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK GLY A 100 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK PRO A 101 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK SER A 102 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK SER A 103 UNP Q00341 CLONING ARTIFACT SEQADV 2CTK GLY A 104 UNP Q00341 CLONING ARTIFACT
SEQRES 1 A 104 GLY SER SER GLY SER SER GLY LYS GLU ALA LEU GLU ALA SEQRES 2 A 104 LEU VAL PRO VAL THR ILE GLU VAL GLU VAL PRO PHE ASP SEQRES 3 A 104 LEU HIS ARG TYR VAL ILE GLY GLN LYS GLY SER GLY ILE SEQRES 4 A 104 ARG LYS MET MET ASP GLU PHE GLU VAL ASN ILE HIS VAL SEQRES 5 A 104 PRO ALA PRO GLU LEU GLN SER ASP ILE ILE ALA ILE THR SEQRES 6 A 104 GLY LEU ALA ALA ASN LEU ASP ARG ALA LYS ALA GLY LEU SEQRES 7 A 104 LEU GLU ARG VAL LYS GLU LEU GLN ALA GLU GLN GLU ASP SEQRES 8 A 104 ARG ALA LEU ARG SER PHE LYS SER GLY PRO SER SER GLY
HELIX 1 1 HIS A 28 GLY A 33 1 6 HELIX 2 2 GLY A 36 PHE A 46 1 11 HELIX 3 3 LEU A 67 ARG A 95 1 29
SHEET 1 A 3 VAL A 17 GLU A 22 0 SHEET 2 A 3 ILE A 61 GLY A 66 -1 O GLY A 66 N VAL A 17 SHEET 3 A 3 ASN A 49 HIS A 51 -1 N ASN A 49 O THR A 65
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000