10 20 30 40 50 60 70 80 2CTJ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 24-MAY-05 2CTJ
TITLE SOLUTION STRUCTURE OF THE 8TH KH TYPE I DOMAIN FROM HUMAN TITLE 2 VIGILIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIGILIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KH DOMAIN; COMPND 5 SYNONYM: HIGH DENSITY LIPOPROTEIN-BINDING PROTEIN, HDL- COMPND 6 BINDING PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDLBP; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050131-14; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS K HOMOLOGY TYPE I DOMAIN, RNA-BINDING, CELL STEROL KEYWDS 2 METABOLISM, BETA-ALPHA-ALPHA-BETA-BETA-ALPHA STRUCTURE, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 4 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSPORT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2CTJ 1 VERSN REVDAT 1 24-NOV-05 2CTJ 0
JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 8TH KH TYPE I DOMAIN JRNL TITL 2 FROM HUMAN VIGILIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CTJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024603.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.10MM KH DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 61 36.32 -96.40 REMARK 500 1 GLN A 87 99.67 -50.93 REMARK 500 2 SER A 2 119.66 -166.45 REMARK 500 2 ASP A 61 39.86 -94.50 REMARK 500 2 ALA A 83 -36.62 -37.95 REMARK 500 3 SER A 8 148.97 -173.92 REMARK 500 3 ILE A 16 137.29 -37.02 REMARK 500 3 ASP A 61 39.67 -99.44 REMARK 500 4 ILE A 9 40.14 -108.04 REMARK 500 4 ILE A 16 139.18 -34.14 REMARK 500 4 ASP A 61 37.78 -99.37 REMARK 500 4 GLN A 87 124.06 -34.67 REMARK 500 4 PRO A 92 98.99 -69.86 REMARK 500 4 SER A 94 136.98 -37.65 REMARK 500 5 SER A 2 42.16 38.30 REMARK 500 5 ILE A 9 39.30 -84.03 REMARK 500 5 ILE A 16 147.66 -36.31 REMARK 500 5 SER A 41 -70.02 -61.55 REMARK 500 5 ASP A 61 31.56 -91.17 REMARK 500 5 GLN A 87 129.64 -35.68 REMARK 500 5 PRO A 92 1.52 -69.70 REMARK 500 6 SER A 2 143.50 -174.25 REMARK 500 6 ILE A 16 143.93 -36.97 REMARK 500 6 LYS A 26 -36.50 -39.96 REMARK 500 6 HIS A 28 -71.90 -34.90 REMARK 500 6 SER A 69 -28.09 -37.97 REMARK 500 6 GLN A 87 139.58 -39.35 REMARK 500 6 LYS A 89 150.07 -39.39 REMARK 500 7 SER A 5 148.98 -35.08 REMARK 500 7 LYS A 11 42.10 38.37 REMARK 500 7 ILE A 16 144.70 -36.22 REMARK 500 7 HIS A 28 -71.82 -41.19 REMARK 500 7 ASN A 29 -37.90 -35.48 REMARK 500 7 ASP A 61 37.67 -96.78 REMARK 500 7 PRO A 92 96.54 -69.82 REMARK 500 8 ILE A 16 143.78 -34.00 REMARK 500 8 ASP A 61 37.40 -88.37 REMARK 500 8 GLN A 87 106.22 -53.89 REMARK 500 9 ASP A 12 148.31 -172.25 REMARK 500 9 ILE A 16 143.55 -33.92 REMARK 500 9 ASP A 61 38.79 -97.93 REMARK 500 9 SER A 69 -33.81 -34.52 REMARK 500 10 ILE A 9 40.58 -88.62 REMARK 500 10 ASP A 61 41.25 -94.50 REMARK 500 10 GLN A 87 148.93 -36.33 REMARK 500 11 LYS A 11 167.86 -46.17 REMARK 500 11 ILE A 16 145.19 -34.36 REMARK 500 12 ILE A 16 142.29 -34.99 REMARK 500 12 ASP A 61 38.86 -92.13 REMARK 500 12 SER A 70 -37.51 -35.13 REMARK 500 13 LYS A 26 -30.94 -39.81 REMARK 500 13 ASP A 61 33.35 -91.74 REMARK 500 13 GLN A 87 118.50 -36.48 REMARK 500 13 SER A 93 151.85 -43.01 REMARK 500 14 GLN A 10 -41.23 -130.78 REMARK 500 14 LYS A 11 35.84 35.76 REMARK 500 14 LEU A 13 124.12 -34.28 REMARK 500 14 ALA A 14 146.62 -174.49 REMARK 500 14 GLU A 56 -37.78 -34.14 REMARK 500 14 SER A 93 150.38 -47.08 REMARK 500 15 LEU A 13 129.77 -39.21 REMARK 500 15 ILE A 16 137.65 -35.36 REMARK 500 15 ASP A 61 42.65 -97.37 REMARK 500 15 GLN A 87 140.14 -35.51 REMARK 500 15 THR A 88 106.27 -50.88 REMARK 500 15 LYS A 89 151.67 -39.65 REMARK 500 16 ALA A 14 124.58 -173.87 REMARK 500 16 ILE A 16 156.01 -46.50 REMARK 500 16 SER A 70 -35.12 -35.87 REMARK 500 16 THR A 88 46.26 -83.45 REMARK 500 16 LYS A 89 -38.86 -38.31 REMARK 500 16 PRO A 92 2.53 -69.76 REMARK 500 17 ILE A 9 57.09 -95.90 REMARK 500 17 ILE A 16 143.01 -34.01 REMARK 500 17 ASP A 61 43.50 -96.55 REMARK 500 17 LYS A 89 -67.10 -90.86 REMARK 500 17 PRO A 92 -174.05 -69.74 REMARK 500 18 ILE A 16 140.85 -34.11 REMARK 500 19 SER A 5 40.95 35.78 REMARK 500 19 SER A 8 43.08 -87.61 REMARK 500 19 GLN A 10 45.80 -94.74 REMARK 500 19 HIS A 81 -37.68 -36.08 REMARK 500 19 GLN A 87 104.21 -45.59 REMARK 500 20 ASP A 61 43.57 -106.03 REMARK 500 20 SER A 69 -31.58 -35.94 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000906.3 RELATED DB: TARGETDB
DBREF 2CTJ A 8 89 UNP Q00341 VIGLN_HUMAN 645 726
SEQADV 2CTJ GLY A 1 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ SER A 2 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ SER A 3 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ GLY A 4 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ SER A 5 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ SER A 6 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ GLY A 7 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ SER A 90 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ GLY A 91 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ PRO A 92 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ SER A 93 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ SER A 94 UNP Q00341 CLONING ARTIFACT SEQADV 2CTJ GLY A 95 UNP Q00341 CLONING ARTIFACT
SEQRES 1 A 95 GLY SER SER GLY SER SER GLY SER ILE GLN LYS ASP LEU SEQRES 2 A 95 ALA ASN ILE ALA GLU VAL GLU VAL SER ILE PRO ALA LYS SEQRES 3 A 95 LEU HIS ASN SER LEU ILE GLY THR LYS GLY ARG LEU ILE SEQRES 4 A 95 ARG SER ILE MET GLU GLU CYS GLY GLY VAL HIS ILE HIS SEQRES 5 A 95 PHE PRO VAL GLU GLY SER GLY SER ASP THR VAL VAL ILE SEQRES 6 A 95 ARG GLY PRO SER SER ASP VAL GLU LYS ALA LYS LYS GLN SEQRES 7 A 95 LEU LEU HIS LEU ALA GLU GLU LYS GLN THR LYS SER GLY SEQRES 8 A 95 PRO SER SER GLY
HELIX 1 1 HIS A 28 GLY A 33 1 6 HELIX 2 2 GLY A 36 GLY A 47 1 12 HELIX 3 3 PRO A 68 GLN A 87 1 20
SHEET 1 A 3 VAL A 19 SER A 22 0 SHEET 2 A 3 THR A 62 ARG A 66 -1 O ILE A 65 N VAL A 19 SHEET 3 A 3 HIS A 50 HIS A 52 -1 N HIS A 50 O ARG A 66
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000