10 20 30 40 50 60 70 80 2CTD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 24-MAY-05 2CTD
TITLE SOLUTION STRUCTURE OF TWO ZF-C2H2 DOMAINS FROM HUMAN ZINC TITLE 2 FINGER PROTEIN 512
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 512; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2 DOMAINS; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF512; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041018-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ZINC BINDING, TWO ZF-C2H2 DOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2CTD 1 VERSN REVDAT 1 24-NOV-05 2CTD 0
JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF TWO ZF-C2H2 DOMAINS FROM JRNL TITL 2 HUMAN ZINC FINGER PROTEIN 512 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CTD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024600.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.06MM ZF-C2H2 DOMAINS U-15N, REMARK 210 13C; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.25MM ZNCL2; REMARK 210 1MM IDA; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 11 72.71 -117.17 REMARK 500 1 ALA A 18 40.34 -81.63 REMARK 500 1 LYS A 59 89.13 -47.12 REMARK 500 1 ALA A 84 -60.26 -93.05 REMARK 500 1 HIS A 86 46.97 -89.67 REMARK 500 1 SER A 88 78.93 -117.72 REMARK 500 1 SER A 91 -60.75 -130.04 REMARK 500 1 PRO A 93 0.06 -69.75 REMARK 500 2 ARG A 10 -69.99 -130.03 REMARK 500 2 LYS A 59 134.60 -173.72 REMARK 500 2 LYS A 79 -29.72 -39.68 REMARK 500 2 HIS A 86 39.73 -85.74 REMARK 500 2 SER A 95 46.80 35.82 REMARK 500 3 ARG A 8 43.24 -101.66 REMARK 500 3 ILE A 9 49.87 39.25 REMARK 500 3 PRO A 14 -179.48 -69.76 REMARK 500 3 THR A 64 117.84 -161.15 REMARK 500 3 HIS A 67 -72.60 -55.23 REMARK 500 3 LYS A 79 -26.16 -39.10 REMARK 500 3 ASN A 87 35.20 39.41 REMARK 500 3 SER A 88 108.63 -34.59 REMARK 500 4 HIS A 86 39.76 -86.26 REMARK 500 5 PRO A 14 -176.87 -69.76 REMARK 500 5 THR A 39 -62.48 -95.19 REMARK 500 5 LYS A 59 93.52 -33.16 REMARK 500 5 GLN A 60 108.03 -56.52 REMARK 500 5 ALA A 76 -71.23 -51.54 REMARK 500 5 ASN A 87 39.76 74.83 REMARK 500 6 TYR A 16 150.42 -48.86 REMARK 500 6 ALA A 18 40.36 -83.27 REMARK 500 6 PRO A 38 0.17 -69.76 REMARK 500 6 ALA A 76 -72.59 -47.47 REMARK 500 7 PRO A 14 -168.60 -69.76 REMARK 500 7 ALA A 17 174.77 -58.34 REMARK 500 7 ALA A 18 39.45 -92.02 REMARK 500 7 THR A 39 -61.21 -95.56 REMARK 500 7 ASN A 57 -35.81 -132.27 REMARK 500 7 THR A 64 116.45 -163.97 REMARK 500 7 LYS A 79 -27.35 -37.83 REMARK 500 7 ASN A 87 35.05 34.38 REMARK 500 7 SER A 91 99.35 -55.65 REMARK 500 8 SER A 2 146.30 -173.12 REMARK 500 8 LYS A 11 108.58 -161.47 REMARK 500 8 PRO A 14 -174.52 -69.85 REMARK 500 8 GLU A 56 -39.28 -34.20 REMARK 500 8 LYS A 59 37.59 -89.81 REMARK 500 8 ALA A 84 -67.26 -107.40 REMARK 500 8 ASN A 87 48.65 34.16 REMARK 500 8 SER A 88 141.81 -170.35 REMARK 500 8 PRO A 93 2.90 -69.77 REMARK 500 8 SER A 94 75.49 -61.68 REMARK 500 9 ARG A 10 50.73 -114.70 REMARK 500 9 LYS A 11 37.64 34.42 REMARK 500 9 PRO A 14 -176.38 -69.79 REMARK 500 9 ALA A 18 47.08 -82.63 REMARK 500 9 THR A 39 -64.75 -96.38 REMARK 500 9 THR A 64 117.40 -164.87 REMARK 500 9 PRO A 93 3.19 -69.70 REMARK 500 10 GLU A 28 -30.85 -39.83 REMARK 500 10 CYS A 58 -72.39 -43.73 REMARK 500 10 CYS A 65 161.06 -45.72 REMARK 500 10 ARG A 73 -61.11 -90.26 REMARK 500 10 ALA A 84 -72.41 -76.28 REMARK 500 10 PRO A 93 -173.33 -69.72 REMARK 500 11 LYS A 11 145.75 -174.18 REMARK 500 11 ALA A 18 40.86 -93.11 REMARK 500 11 GLU A 28 -30.04 -39.88 REMARK 500 11 THR A 64 115.39 -164.40 REMARK 500 11 LYS A 79 -25.25 -39.58 REMARK 500 11 ASN A 87 47.40 74.93 REMARK 500 11 SER A 88 -50.75 -127.97 REMARK 500 11 PRO A 90 97.29 -69.79 REMARK 500 12 SER A 2 146.73 -173.19 REMARK 500 12 SER A 6 -55.48 -125.07 REMARK 500 12 PRO A 14 -170.50 -69.74 REMARK 500 12 ALA A 18 42.30 -80.14 REMARK 500 12 PRO A 38 3.23 -69.81 REMARK 500 12 LYS A 46 -19.66 -46.79 REMARK 500 12 ALA A 76 -70.09 -39.26 REMARK 500 12 LYS A 79 -19.43 -47.43 REMARK 500 12 HIS A 86 -71.05 -86.07 REMARK 500 12 ASN A 87 46.20 -85.29 REMARK 500 12 PRO A 93 85.08 -69.74 REMARK 500 13 SER A 2 140.68 -170.49 REMARK 500 13 ILE A 9 95.74 -65.17 REMARK 500 13 SER A 20 172.48 -56.67 REMARK 500 13 THR A 39 -60.26 -96.92 REMARK 500 13 LYS A 59 91.33 -45.50 REMARK 500 13 GLN A 60 169.32 -47.07 REMARK 500 13 ALA A 84 -68.50 -90.26 REMARK 500 13 HIS A 86 36.18 -85.80 REMARK 500 13 PRO A 93 95.31 -69.75 REMARK 500 14 ARG A 10 130.74 -173.52 REMARK 500 14 GLU A 12 141.45 -174.90 REMARK 500 14 ALA A 18 41.25 -90.24 REMARK 500 14 LYS A 59 104.46 -35.10 REMARK 500 14 LYS A 79 -29.25 -39.48 REMARK 500 14 ALA A 84 -65.11 -98.00 REMARK 500 14 HIS A 86 34.13 -86.67 REMARK 500 14 ASN A 87 87.89 -66.60 REMARK 500 14 PRO A 90 88.45 -69.74 REMARK 500 15 PRO A 14 -179.51 -69.76 REMARK 500 15 ALA A 18 47.80 -80.36 REMARK 500 15 MET A 62 138.55 -34.44 REMARK 500 15 HIS A 86 41.89 -83.42 REMARK 500 15 ASN A 87 94.28 -61.04 REMARK 500 16 ALA A 18 43.24 -81.18 REMARK 500 16 GLU A 28 -31.22 -37.29 REMARK 500 16 LYS A 59 109.06 -42.03 REMARK 500 16 HIS A 86 49.28 -85.66 REMARK 500 16 PRO A 90 -176.81 -69.73 REMARK 500 16 SER A 91 123.25 -34.20 REMARK 500 17 SER A 5 116.29 -39.87 REMARK 500 17 ALA A 17 152.47 -45.88 REMARK 500 17 ALA A 18 44.15 -79.99 REMARK 500 17 GLU A 61 172.77 -47.89 REMARK 500 17 CYS A 65 161.84 -49.66 REMARK 500 17 HIS A 86 44.20 -81.86 REMARK 500 18 PRO A 14 -175.70 -69.77 REMARK 500 18 LYS A 59 -175.21 -67.71 REMARK 500 18 MET A 62 153.53 -37.32 REMARK 500 18 THR A 64 106.95 -35.70 REMARK 500 18 CYS A 65 157.21 -47.83 REMARK 500 18 HIS A 86 41.24 -89.90 REMARK 500 18 ASN A 87 107.15 -51.10 REMARK 500 18 SER A 88 106.67 -164.80 REMARK 500 18 PRO A 90 -172.49 -69.72 REMARK 500 19 PRO A 14 -176.48 -69.75 REMARK 500 19 ALA A 17 163.22 -48.70 REMARK 500 19 PRO A 38 0.78 -69.74 REMARK 500 19 LYS A 46 0.68 -69.76 REMARK 500 19 GLU A 61 131.63 -37.03 REMARK 500 19 ALA A 76 -72.17 -50.25 REMARK 500 20 PRO A 14 -175.48 -69.78 REMARK 500 20 ALA A 17 163.86 -43.43 REMARK 500 20 PRO A 38 0.65 -69.74 REMARK 500 20 LYS A 46 31.98 -92.58 REMARK 500 20 ALA A 84 -72.20 -82.83 REMARK 500 20 HIS A 86 51.77 -94.43 REMARK 500 20 ASN A 87 44.39 -80.35 REMARK 500 20 SER A 91 125.99 -35.98 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 40 SG 96.3 REMARK 620 3 HIS A 54 NE2 113.9 112.6 REMARK 620 4 CYS A 58 SG 116.3 117.1 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 68 SG 114.4 REMARK 620 3 HIS A 81 NE2 97.2 116.7 REMARK 620 4 HIS A 86 NE2 117.0 97.6 115.2 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001773.1 RELATED DB: TARGETDB
DBREF 2CTD A 8 90 UNP Q96ME7 ZN512_HUMAN 142 224
SEQADV 2CTD GLY A 1 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD SER A 2 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD SER A 3 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD GLY A 4 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD SER A 5 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD SER A 6 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD GLY A 7 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD SER A 91 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD GLY A 92 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD PRO A 93 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD SER A 94 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD SER A 95 UNP Q96ME7 CLONING ARTIFACT SEQADV 2CTD GLY A 96 UNP Q96ME7 CLONING ARTIFACT
SEQRES 1 A 96 GLY SER SER GLY SER SER GLY ARG ILE ARG LYS GLU PRO SEQRES 2 A 96 PRO VAL TYR ALA ALA GLY SER LEU GLU GLU GLN TRP TYR SEQRES 3 A 96 LEU GLU ILE VAL ASP LYS GLY SER VAL SER CYS PRO THR SEQRES 4 A 96 CYS GLN ALA VAL GLY ARG LYS THR ILE GLU GLY LEU LYS SEQRES 5 A 96 LYS HIS MET GLU ASN CYS LYS GLN GLU MET PHE THR CYS SEQRES 6 A 96 HIS HIS CYS GLY LYS GLN LEU ARG SER LEU ALA GLY MET SEQRES 7 A 96 LYS TYR HIS VAL MET ALA ASN HIS ASN SER LEU PRO SER SEQRES 8 A 96 GLY PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 SER A 20 LYS A 32 1 13 HELIX 2 2 THR A 47 LYS A 59 1 13 HELIX 3 3 SER A 74 HIS A 86 1 13
SHEET 1 A 2 VAL A 35 SER A 36 0 SHEET 2 A 2 GLY A 44 ARG A 45 -1 O ARG A 45 N VAL A 35
LINK ZN ZN A 201 SG CYS A 37 1555 1555 2.37 LINK ZN ZN A 201 SG CYS A 40 1555 1555 2.33 LINK ZN ZN A 201 NE2 HIS A 54 1555 1555 2.36 LINK ZN ZN A 201 SG CYS A 58 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 65 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 68 1555 1555 2.33 LINK ZN ZN A 401 NE2 HIS A 81 1555 1555 2.37 LINK ZN ZN A 401 NE2 HIS A 86 1555 1555 2.34
SITE 1 AC1 4 CYS A 37 CYS A 40 HIS A 54 CYS A 58 SITE 1 AC2 4 CYS A 65 CYS A 68 HIS A 81 HIS A 86
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000