10 20 30 40 50 60 70 80 2CT1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 23-MAY-05 2CT1
TITLE SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF TITLE 2 TRANSCRIPTIONAL REPRESSOR CTCF PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN; COMPND 5 SYNONYM: CCCTC-BINDING FACTOR, CTCFL PARALOG, 11-ZINC COMPND 6 FINGER PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTCF; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040809-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS TRANSCRIPTIONAL REPRESSOR CTCF, CCCTC-BINDING FACTOR, ZINC KEYWDS 2 FINGER, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.MIYAMOTO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2CT1 1 VERSN REVDAT 1 23-NOV-05 2CT1 0
JRNL AUTH K.MIYAMOTO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF JRNL TITL 2 TRANSCRIPTIONAL REPRESSOR CTCF PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CT1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024590.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.46MM ZINC FINGER DOMAIN U- REMARK 210 13C, 15N; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 0.05MM ZNCL2; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.925, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 108.00 -169.04 REMARK 500 1 PRO A 15 2.86 -69.83 REMARK 500 1 HIS A 39 57.80 -118.89 REMARK 500 1 ASN A 42 44.28 -85.21 REMARK 500 1 PRO A 49 3.04 -69.77 REMARK 500 1 HIS A 50 -71.46 -116.30 REMARK 500 1 ALA A 56 -76.25 -41.00 REMARK 500 1 LYS A 67 -74.60 -71.69 REMARK 500 1 PRO A 74 84.97 -69.79 REMARK 500 2 SER A 5 149.04 -170.05 REMARK 500 2 ARG A 8 41.86 -85.46 REMARK 500 2 HIS A 10 85.08 -63.25 REMARK 500 2 PRO A 15 3.18 -69.74 REMARK 500 2 ALA A 44 -64.94 -91.99 REMARK 500 2 PRO A 49 0.64 -69.75 REMARK 500 2 HIS A 50 -70.25 -118.34 REMARK 500 2 ALA A 56 -75.47 -100.17 REMARK 500 2 PRO A 74 2.84 -69.79 REMARK 500 2 SER A 75 41.60 72.50 REMARK 500 3 SER A 3 135.87 -34.93 REMARK 500 3 ASN A 42 44.05 -79.78 REMARK 500 3 PRO A 49 3.73 -69.73 REMARK 500 3 HIS A 50 -71.65 -118.58 REMARK 500 3 ALA A 56 -75.28 -49.24 REMARK 500 3 PRO A 74 -178.80 -69.74 REMARK 500 3 SER A 76 -58.10 -131.17 REMARK 500 4 SER A 6 128.44 -36.34 REMARK 500 4 PRO A 15 0.94 -69.79 REMARK 500 4 ASN A 42 44.72 -82.62 REMARK 500 4 ALA A 44 -70.55 -79.25 REMARK 500 4 PRO A 49 6.59 -69.73 REMARK 500 4 HIS A 50 -71.74 -122.98 REMARK 500 4 ALA A 56 -73.21 -103.54 REMARK 500 5 PRO A 15 3.94 -69.74 REMARK 500 5 HIS A 22 30.23 72.50 REMARK 500 5 ASN A 42 39.84 -81.74 REMARK 500 5 PRO A 49 2.54 -69.77 REMARK 500 5 HIS A 50 -72.01 -116.47 REMARK 500 5 ALA A 56 -75.13 -44.64 REMARK 500 5 LYS A 67 -71.76 -73.13 REMARK 500 5 PRO A 74 94.10 -69.79 REMARK 500 6 HIS A 22 30.15 73.81 REMARK 500 6 ASN A 42 41.15 -81.47 REMARK 500 6 ALA A 44 -68.37 -92.29 REMARK 500 6 PRO A 49 5.25 -69.75 REMARK 500 6 HIS A 50 -65.05 -124.29 REMARK 500 6 ALA A 56 -72.67 -36.79 REMARK 500 6 LYS A 67 -70.57 -77.00 REMARK 500 7 GLU A 13 141.56 -35.21 REMARK 500 7 PRO A 15 4.86 -69.77 REMARK 500 7 HIS A 39 50.03 -114.00 REMARK 500 7 VAL A 43 144.57 -170.28 REMARK 500 7 PRO A 49 8.63 -69.78 REMARK 500 7 HIS A 50 -70.95 -124.20 REMARK 500 7 ALA A 56 -75.14 -106.61 REMARK 500 7 LYS A 67 -70.10 -72.73 REMARK 500 7 SER A 76 117.71 -173.43 REMARK 500 8 GLU A 13 33.08 -84.31 REMARK 500 8 PRO A 15 0.64 -69.83 REMARK 500 8 CYS A 48 133.82 -35.86 REMARK 500 8 PRO A 49 5.39 -69.79 REMARK 500 8 HIS A 50 -68.94 -125.30 REMARK 500 8 ILE A 55 77.22 -118.42 REMARK 500 8 ALA A 56 -74.68 -28.07 REMARK 500 8 LYS A 67 -73.59 -73.36 REMARK 500 9 HIS A 10 42.57 -103.22 REMARK 500 9 SER A 11 138.68 -36.34 REMARK 500 9 PRO A 15 3.36 -69.76 REMARK 500 9 HIS A 22 38.89 74.94 REMARK 500 9 HIS A 39 50.31 -118.77 REMARK 500 9 ASN A 42 43.70 -79.54 REMARK 500 9 PRO A 49 13.13 -69.76 REMARK 500 9 HIS A 50 -72.64 -126.17 REMARK 500 9 ALA A 56 -75.61 -44.86 REMARK 500 9 SER A 59 -39.08 -38.27 REMARK 500 10 PRO A 15 1.84 -69.74 REMARK 500 10 PRO A 49 11.50 -69.74 REMARK 500 10 HIS A 50 -71.75 -124.91 REMARK 500 10 ALA A 56 -73.45 -97.81 REMARK 500 10 LYS A 67 -71.48 -76.58 REMARK 500 10 PRO A 74 84.66 -69.77 REMARK 500 10 SER A 75 133.33 -172.46 REMARK 500 11 VAL A 43 147.92 -171.22 REMARK 500 11 ALA A 44 -73.57 -87.97 REMARK 500 11 PRO A 49 7.42 -69.77 REMARK 500 11 HIS A 50 -73.53 -129.48 REMARK 500 11 LYS A 67 -71.37 -79.19 REMARK 500 11 TYR A 71 -38.75 -132.83 REMARK 500 12 PRO A 15 1.21 -69.78 REMARK 500 12 HIS A 22 35.57 74.48 REMARK 500 12 ASN A 42 42.61 -80.14 REMARK 500 12 ALA A 44 -70.78 -85.36 REMARK 500 12 HIS A 50 -64.04 -101.72 REMARK 500 12 THR A 53 122.26 -32.45 REMARK 500 12 ALA A 56 -76.28 -77.49 REMARK 500 12 SER A 59 -34.87 -38.26 REMARK 500 12 LEU A 61 -38.77 -35.50 REMARK 500 12 LYS A 67 -71.14 -76.07 REMARK 500 12 PRO A 74 5.20 -69.77 REMARK 500 13 ILE A 20 -57.06 -122.10 REMARK 500 13 CYS A 48 132.98 -38.52 REMARK 500 13 PRO A 49 1.66 -69.78 REMARK 500 13 ILE A 55 76.91 -118.78 REMARK 500 13 ALA A 56 -72.57 -26.84 REMARK 500 13 PRO A 74 1.49 -69.77 REMARK 500 13 SER A 75 41.77 36.07 REMARK 500 14 SER A 3 114.13 -171.67 REMARK 500 14 SER A 11 47.53 -77.96 REMARK 500 14 HIS A 39 50.48 -117.91 REMARK 500 14 ASN A 42 47.77 -78.22 REMARK 500 14 VAL A 43 146.12 -173.47 REMARK 500 14 PRO A 49 4.47 -69.82 REMARK 500 14 HIS A 50 -72.59 -117.38 REMARK 500 14 ALA A 56 -74.46 -46.53 REMARK 500 14 LYS A 67 -76.11 -73.37 REMARK 500 14 SER A 75 45.75 -93.73 REMARK 500 15 PRO A 15 0.92 -69.77 REMARK 500 15 HIS A 39 50.34 -113.76 REMARK 500 15 ASN A 42 47.93 -76.20 REMARK 500 15 ALA A 44 -60.39 -91.14 REMARK 500 15 ALA A 56 -75.39 -37.65 REMARK 500 15 LYS A 67 -75.17 -75.85 REMARK 500 15 PRO A 74 -175.90 -69.70 REMARK 500 16 PRO A 15 2.65 -69.75 REMARK 500 16 ASN A 42 43.05 -82.50 REMARK 500 16 ALA A 44 -67.05 -94.25 REMARK 500 16 CYS A 48 137.48 -37.81 REMARK 500 16 PRO A 49 10.58 -69.78 REMARK 500 16 HIS A 50 -67.45 -132.06 REMARK 500 16 ALA A 56 -71.68 -29.65 REMARK 500 16 LYS A 67 -72.76 -73.56 REMARK 500 17 HIS A 10 89.41 -60.14 REMARK 500 17 PRO A 15 4.25 -69.75 REMARK 500 17 GLU A 17 139.76 -175.05 REMARK 500 17 PRO A 49 10.43 -69.77 REMARK 500 17 HIS A 50 -71.44 -124.45 REMARK 500 17 ALA A 56 -72.80 -53.90 REMARK 500 17 SER A 76 109.50 -58.19 REMARK 500 18 THR A 9 140.09 -37.60 REMARK 500 18 HIS A 10 36.84 -83.64 REMARK 500 18 GLU A 13 28.22 39.94 REMARK 500 18 VAL A 43 147.94 -170.10 REMARK 500 18 ALA A 44 -68.13 -90.26 REMARK 500 18 PRO A 49 7.31 -69.77 REMARK 500 18 HIS A 50 -72.38 -126.36 REMARK 500 18 ALA A 56 -76.05 -43.94 REMARK 500 18 LYS A 67 -74.18 -75.55 REMARK 500 19 PRO A 15 2.58 -69.75 REMARK 500 19 VAL A 43 146.01 -170.62 REMARK 500 19 ALA A 44 -68.06 -92.17 REMARK 500 19 HIS A 50 -67.22 -92.49 REMARK 500 19 ALA A 56 -75.38 -40.53 REMARK 500 19 LYS A 67 -71.83 -70.66 REMARK 500 19 SER A 72 -50.44 -130.69 REMARK 500 20 HIS A 10 119.27 -167.49 REMARK 500 20 GLU A 13 71.33 -117.87 REMARK 500 20 PRO A 15 2.97 -69.76 REMARK 500 20 HIS A 22 37.96 74.86 REMARK 500 20 PRO A 49 9.82 -69.71 REMARK 500 20 HIS A 50 -71.75 -123.48 REMARK 500 20 ALA A 56 -70.55 -76.68 REMARK 500 20 LYS A 67 -74.01 -71.73 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 111.9 REMARK 620 3 HIS A 34 NE2 117.6 86.7 REMARK 620 4 HIS A 39 NE2 106.5 115.2 118.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 48 SG REMARK 620 2 CYS A 51 SG 118.3 REMARK 620 3 HIS A 64 NE2 91.0 113.9 REMARK 620 4 HIS A 69 NE2 104.2 118.3 107.5 REMARK 620 N 1 2 3
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000882.2 RELATED DB: TARGETDB
DBREF 2CT1 A 8 71 UNP P49711 CTCF_HUMAN 399 462
SEQADV 2CT1 GLY A 1 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 SER A 2 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 SER A 3 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 GLY A 4 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 SER A 5 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 SER A 6 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 GLY A 7 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 SER A 72 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 GLY A 73 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 PRO A 74 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 SER A 75 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 SER A 76 UNP P49711 CLONING ARTIFACT SEQADV 2CT1 GLY A 77 UNP P49711 CLONING ARTIFACT
SEQRES 1 A 77 GLY SER SER GLY SER SER GLY ARG THR HIS SER GLY GLU SEQRES 2 A 77 LYS PRO TYR GLU CYS TYR ILE CYS HIS ALA ARG PHE THR SEQRES 3 A 77 GLN SER GLY THR MET LYS MET HIS ILE LEU GLN LYS HIS SEQRES 4 A 77 THR GLU ASN VAL ALA LYS PHE HIS CYS PRO HIS CYS ASP SEQRES 5 A 77 THR VAL ILE ALA ARG LYS SER ASP LEU GLY VAL HIS LEU SEQRES 6 A 77 ARG LYS GLN HIS SER TYR SER GLY PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 SER A 28 GLN A 37 1 10 HELIX 2 2 LYS A 58 LYS A 67 1 10
SHEET 1 A 2 TYR A 16 GLU A 17 0 SHEET 2 A 2 ARG A 24 PHE A 25 -1 O PHE A 25 N TYR A 16 SHEET 1 B 2 PHE A 46 HIS A 47 0 SHEET 2 B 2 VAL A 54 ILE A 55 -1 O ILE A 55 N PHE A 46
LINK ZN ZN A 201 SG CYS A 18 1555 1555 2.35 LINK ZN ZN A 201 SG CYS A 21 1555 1555 2.33 LINK ZN ZN A 201 NE2 HIS A 34 1555 1555 2.33 LINK ZN ZN A 201 NE2 HIS A 39 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 48 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 51 1555 1555 2.33 LINK ZN ZN A 401 NE2 HIS A 64 1555 1555 2.33 LINK ZN ZN A 401 NE2 HIS A 69 1555 1555 2.33
SITE 1 AC1 4 CYS A 18 CYS A 21 HIS A 34 HIS A 39 SITE 1 AC2 4 CYS A 48 CYS A 51 HIS A 64 HIS A 69
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000