10 20 30 40 50 60 70 80 2CSQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ENDOCYTOSIS/EXOCYTOSIS 22-MAY-05 2CSQ
TITLE SOLUTION STRUCTURE OF THE SECOND SH3 DOMAIN OF HUMAN RIM- TITLE 2 BINDING PROTEIN 2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIM BINDING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: RIM-BP2; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HG00364; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040705-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS SH3 DOMAIN, RIM BINDING PROTEIN 2, RIM-BP2, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 ENDOCYTOSIS/EXOCYTOSIS COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.INOUE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2CSQ 1 VERSN REVDAT 1 22-NOV-05 2CSQ 0
JRNL AUTH K.INOUE,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND SH3 DOMAIN OF JRNL TITL 2 HUMAN RIM-BINDING PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CSQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024580.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.01MM U-15N, 13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 163.54 -42.33 REMARK 500 1 ASP A 9 149.50 -37.54 REMARK 500 1 PHE A 44 140.62 -173.22 REMARK 500 1 LYS A 51 87.27 -62.83 REMARK 500 1 ASP A 85 172.63 -50.49 REMARK 500 1 MET A 88 174.51 -50.03 REMARK 500 1 SER A 95 153.90 -42.67 REMARK 500 2 ALA A 12 69.29 -111.15 REMARK 500 2 TYR A 53 73.46 -116.82 REMARK 500 2 ARG A 63 94.42 -66.78 REMARK 500 2 MET A 77 -71.99 -74.81 REMARK 500 2 VAL A 78 -178.44 -58.30 REMARK 500 2 MET A 89 122.73 -35.78 REMARK 500 3 ALA A 12 39.01 -84.32 REMARK 500 3 ARG A 18 120.55 -35.32 REMARK 500 3 ASP A 25 156.41 -37.62 REMARK 500 3 ARG A 63 99.05 -61.27 REMARK 500 3 MET A 77 -71.42 -88.72 REMARK 500 3 VAL A 78 170.67 -52.20 REMARK 500 3 GLU A 87 153.35 -38.43 REMARK 500 3 MET A 89 96.12 -52.12 REMARK 500 3 GLN A 91 136.79 -34.48 REMARK 500 4 SER A 2 150.61 -44.36 REMARK 500 4 ASP A 55 -176.26 -54.92 REMARK 500 4 ASP A 57 -175.83 -64.21 REMARK 500 4 ARG A 63 94.62 -55.53 REMARK 500 4 ALA A 68 28.96 48.99 REMARK 500 4 VAL A 78 -179.48 -59.23 REMARK 500 4 ASP A 84 -51.00 -124.90 REMARK 500 4 ASP A 85 121.28 -38.18 REMARK 500 4 MET A 88 35.33 -83.71 REMARK 500 5 PRO A 10 90.65 -69.74 REMARK 500 5 GLU A 13 165.94 -45.30 REMARK 500 5 ASP A 25 153.80 -43.35 REMARK 500 5 MET A 31 -55.82 -129.09 REMARK 500 5 LYS A 51 97.36 -68.55 REMARK 500 5 ASP A 57 -178.59 -51.86 REMARK 500 5 ARG A 63 98.67 -58.02 REMARK 500 5 CYS A 67 43.06 37.00 REMARK 500 5 VAL A 78 171.38 -55.38 REMARK 500 5 GLN A 82 171.73 -49.60 REMARK 500 5 ASP A 85 157.73 -38.91 REMARK 500 5 PRO A 94 -179.64 -69.77 REMARK 500 5 SER A 96 167.98 -45.66 REMARK 500 6 GLU A 13 40.41 34.45 REMARK 500 6 ARG A 18 102.61 -47.38 REMARK 500 6 LYS A 56 178.76 -55.66 REMARK 500 6 ARG A 63 99.62 -59.97 REMARK 500 6 CYS A 67 27.35 49.73 REMARK 500 6 VAL A 78 176.90 -55.17 REMARK 500 6 SER A 92 172.63 -55.02 REMARK 500 7 PRO A 10 99.96 -69.76 REMARK 500 7 LEU A 15 156.14 -46.07 REMARK 500 7 ASP A 25 151.05 -45.41 REMARK 500 7 MET A 31 -72.92 -62.01 REMARK 500 7 ARG A 63 99.08 -54.74 REMARK 500 7 MET A 77 -70.50 -95.36 REMARK 500 7 VAL A 78 179.53 -57.60 REMARK 500 7 ALA A 83 109.63 -51.63 REMARK 500 7 ASP A 84 54.46 -91.06 REMARK 500 7 ASP A 90 135.02 -37.98 REMARK 500 8 PRO A 10 -172.67 -69.73 REMARK 500 8 GLU A 13 41.38 -91.68 REMARK 500 8 ARG A 63 101.92 -58.53 REMARK 500 8 MET A 77 -67.13 -126.04 REMARK 500 8 VAL A 78 178.91 -58.67 REMARK 500 8 ALA A 83 125.06 -174.46 REMARK 500 8 ASP A 85 -177.08 -56.39 REMARK 500 8 SER A 92 174.10 -51.42 REMARK 500 8 PRO A 94 -174.04 -69.74 REMARK 500 9 SER A 3 173.94 -48.42 REMARK 500 9 ARG A 18 108.01 -34.83 REMARK 500 9 ASP A 25 160.50 -39.84 REMARK 500 9 MET A 77 -70.80 -75.33 REMARK 500 9 VAL A 78 174.38 -51.20 REMARK 500 9 ILE A 81 -71.23 -78.61 REMARK 500 9 ASP A 84 46.76 -91.67 REMARK 500 9 SER A 92 94.14 -52.84 REMARK 500 10 PRO A 10 -170.94 -69.73 REMARK 500 10 GLU A 13 28.71 42.05 REMARK 500 10 ARG A 18 103.39 -54.83 REMARK 500 10 ARG A 63 94.63 -63.40 REMARK 500 10 MET A 77 -64.22 -93.61 REMARK 500 10 ASP A 85 174.20 -53.83 REMARK 500 10 MET A 89 124.44 -39.53 REMARK 500 10 PRO A 94 0.19 -69.79 REMARK 500 11 GLU A 13 132.51 -37.03 REMARK 500 11 ASP A 25 138.94 -39.12 REMARK 500 11 ASP A 57 -178.62 -61.64 REMARK 500 11 ARG A 63 97.72 -57.30 REMARK 500 11 MET A 77 -73.96 -75.54 REMARK 500 11 VAL A 78 174.68 -47.85 REMARK 500 11 ASP A 85 133.22 -38.54 REMARK 500 12 LYS A 56 108.14 -59.68 REMARK 500 12 ASP A 57 175.64 -59.31 REMARK 500 12 ARG A 63 93.15 -59.59 REMARK 500 12 PRO A 74 99.14 -69.83 REMARK 500 12 VAL A 78 176.14 -59.16 REMARK 500 12 PRO A 94 83.97 -69.79 REMARK 500 13 ARG A 63 87.54 -58.78 REMARK 500 13 CYS A 67 53.07 35.84 REMARK 500 13 MET A 77 -74.52 -69.31 REMARK 500 13 VAL A 78 179.68 -53.84 REMARK 500 14 ALA A 12 39.02 -96.16 REMARK 500 14 ASP A 25 153.79 -39.62 REMARK 500 14 ARG A 63 95.94 -58.74 REMARK 500 14 VAL A 78 176.21 -55.93 REMARK 500 14 GLU A 87 177.04 -53.10 REMARK 500 14 ASP A 90 37.51 -96.67 REMARK 500 15 ASP A 25 155.74 -37.13 REMARK 500 15 LEU A 70 114.81 -168.56 REMARK 500 15 MET A 77 -73.50 -106.25 REMARK 500 15 VAL A 78 170.03 -55.04 REMARK 500 15 ASP A 84 45.67 -85.91 REMARK 500 15 GLU A 86 102.95 -43.07 REMARK 500 15 GLN A 91 40.12 -97.19 REMARK 500 16 SER A 2 109.57 -50.99 REMARK 500 16 ARG A 63 94.28 -62.22 REMARK 500 16 CYS A 67 27.64 49.98 REMARK 500 16 MET A 77 -71.13 -75.43 REMARK 500 16 VAL A 78 -178.72 -54.44 REMARK 500 16 ALA A 83 70.30 -119.14 REMARK 500 17 SER A 3 115.38 -37.17 REMARK 500 17 SER A 5 107.08 -52.56 REMARK 500 17 ALA A 12 39.19 -91.35 REMARK 500 17 MET A 31 -65.62 -97.35 REMARK 500 17 ARG A 63 92.30 -64.02 REMARK 500 17 MET A 77 -65.30 -94.47 REMARK 500 17 SER A 95 105.78 -40.85 REMARK 500 18 SER A 2 135.26 -170.21 REMARK 500 18 GLU A 13 43.39 -82.71 REMARK 500 18 ASP A 25 151.85 -39.02 REMARK 500 18 LEU A 29 -19.36 -48.01 REMARK 500 18 ASP A 57 179.04 -50.01 REMARK 500 18 ARG A 63 96.14 -55.09 REMARK 500 18 MET A 77 -73.70 -68.84 REMARK 500 18 VAL A 78 179.98 -54.23 REMARK 500 18 ASP A 85 157.71 -43.94 REMARK 500 18 ASP A 90 170.83 -50.24 REMARK 500 19 ASP A 55 179.37 -59.92 REMARK 500 19 ARG A 63 93.34 -56.89 REMARK 500 19 VAL A 78 176.14 -56.05 REMARK 500 19 GLN A 82 175.34 -52.03 REMARK 500 19 MET A 89 108.34 -38.68 REMARK 500 19 SER A 92 132.27 -173.54 REMARK 500 20 SER A 5 44.10 -83.12 REMARK 500 20 ALA A 12 41.02 -91.58 REMARK 500 20 LEU A 15 144.16 -37.33 REMARK 500 20 ASP A 57 -178.30 -60.45 REMARK 500 20 ARG A 63 93.49 -62.08 REMARK 500 20 THR A 66 139.16 -173.98 REMARK 500 20 MET A 77 -70.43 -84.24 REMARK 500 20 VAL A 78 -178.96 -60.99 REMARK 500 20 ASP A 90 151.02 -46.66 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000310.5 RELATED DB: TARGETDB
DBREF 2CSQ A 8 91 UNP O15034 RIMB2_HUMAN 841 924
SEQADV 2CSQ GLY A 1 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ SER A 2 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ SER A 3 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ GLY A 4 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ SER A 5 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ SER A 6 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ GLY A 7 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ SER A 92 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ GLY A 93 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ PRO A 94 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ SER A 95 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ SER A 96 UNP O15034 CLONING ARTIFACT SEQADV 2CSQ GLY A 97 UNP O15034 CLONING ARTIFACT
SEQRES 1 A 97 GLY SER SER GLY SER SER GLY THR ASP PRO GLY ALA GLU SEQRES 2 A 97 GLU LEU PRO ALA ARG ILE PHE VAL ALA LEU PHE ASP TYR SEQRES 3 A 97 ASP PRO LEU THR MET SER PRO ASN PRO ASP ALA ALA GLU SEQRES 4 A 97 GLU GLU LEU PRO PHE LYS GLU GLY GLN ILE ILE LYS VAL SEQRES 5 A 97 TYR GLY ASP LYS ASP ALA ASP GLY PHE TYR ARG GLY GLU SEQRES 6 A 97 THR CYS ALA ARG LEU GLY LEU ILE PRO CYS ASN MET VAL SEQRES 7 A 97 SER GLU ILE GLN ALA ASP ASP GLU GLU MET MET ASP GLN SEQRES 8 A 97 SER GLY PRO SER SER GLY
HELIX 1 1 ASN A 34 GLU A 39 1 6
SHEET 1 A 5 ARG A 69 PRO A 74 0 SHEET 2 A 5 PHE A 61 THR A 66 -1 N TYR A 62 O ILE A 73 SHEET 3 A 5 ILE A 49 LYS A 56 -1 N TYR A 53 O ARG A 63 SHEET 4 A 5 ARG A 18 VAL A 21 -1 N ARG A 18 O VAL A 52 SHEET 5 A 5 SER A 79 GLU A 80 -1 O SER A 79 N VAL A 21
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000