10 20 30 40 50 60 70 80 2CRU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER APOPTOSIS 20-MAY-05 2CRU
TITLE SOLUTION STRUCTURE OF PROGRAMMED CELL DEATH 5
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DSDNA_BIND; COMPND 5 SYNONYM: TFAR19 PROTEIN, TF-1 CELL APOPTOSIS RELATED GENE- COMPND 6 19 PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD5, TFAR19; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041101-22; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS THREE HELIX BUNDLE, APOPTOSIS, DNA BINDING, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGASHIMA,K.IZUMI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2CRU 1 VERSN REVDAT 1 20-NOV-05 2CRU 0
JRNL AUTH T.NAGASHIMA,K.IZUMI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF PROGRAMMED CELL DEATH 5 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CRU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024552.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.28MM DSDNA_BIND U-13C,15N; REMARK 210 20MM TRISHCL, 100MM NACL, 1MM REMARK 210 DTT, 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.901, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 9 40.02 -102.48 REMARK 500 1 ARG A 10 136.64 -36.74 REMARK 500 1 GLN A 11 75.47 -112.69 REMARK 500 1 GLU A 15 155.22 -48.44 REMARK 500 1 ASP A 22 139.98 -174.99 REMARK 500 1 LEU A 55 -71.22 -55.32 REMARK 500 1 THR A 102 152.48 -43.37 REMARK 500 1 GLU A 103 146.61 -170.30 REMARK 500 1 THR A 105 87.80 -61.25 REMARK 500 1 ARG A 112 -62.58 -106.79 REMARK 500 2 PRO A 23 2.82 -69.79 REMARK 500 2 ALA A 26 -30.55 -36.41 REMARK 500 2 LYS A 32 -26.54 -39.04 REMARK 500 2 ALA A 59 -31.65 -36.17 REMARK 500 2 LEU A 82 92.15 -53.21 REMARK 500 2 LYS A 85 137.67 -39.31 REMARK 500 2 VAL A 108 46.33 -80.19 REMARK 500 2 LYS A 109 102.74 -53.45 REMARK 500 2 PHE A 110 115.57 -169.58 REMARK 500 3 PRO A 23 2.29 -69.74 REMARK 500 3 ILE A 92 -35.84 -36.69 REMARK 500 3 LYS A 97 -50.71 -123.80 REMARK 500 3 SER A 99 -68.13 -93.02 REMARK 500 3 THR A 106 114.77 -164.41 REMARK 500 3 ASN A 111 -64.58 -101.49 REMARK 500 3 PRO A 115 2.54 -69.76 REMARK 500 4 ASP A 22 157.22 -38.74 REMARK 500 4 SER A 50 -71.23 -62.03 REMARK 500 4 LEU A 60 -69.62 -97.92 REMARK 500 4 LYS A 62 105.00 -169.28 REMARK 500 4 ILE A 92 -37.78 -35.43 REMARK 500 4 THR A 105 40.79 39.72 REMARK 500 5 PRO A 23 1.50 -69.77 REMARK 500 5 GLU A 35 -34.87 -37.28 REMARK 500 5 LEU A 60 -63.69 -93.94 REMARK 500 5 LYS A 62 104.97 -171.91 REMARK 500 5 LEU A 82 104.51 -49.01 REMARK 500 5 LYS A 85 121.65 -39.43 REMARK 500 5 ILE A 92 -37.49 -37.48 REMARK 500 5 LYS A 104 -65.96 -102.14 REMARK 500 5 VAL A 108 149.23 -172.06 REMARK 500 5 SER A 113 154.99 -46.63 REMARK 500 6 SER A 2 112.25 -169.80 REMARK 500 6 ALA A 31 -70.13 -50.65 REMARK 500 6 LEU A 60 -65.21 -103.05 REMARK 500 6 LYS A 62 104.97 -170.68 REMARK 500 6 GLU A 70 -39.06 -34.80 REMARK 500 6 SER A 113 46.43 34.55 REMARK 500 7 ALA A 14 171.25 -49.09 REMARK 500 7 LEU A 60 -68.61 -106.53 REMARK 500 7 LYS A 62 104.96 -169.77 REMARK 500 7 GLN A 101 -174.76 -59.62 REMARK 500 8 SER A 3 139.31 -174.22 REMARK 500 8 LEU A 13 172.49 -48.42 REMARK 500 8 GLN A 17 53.12 33.76 REMARK 500 8 PRO A 23 4.36 -69.83 REMARK 500 8 ALA A 26 -36.17 -34.67 REMARK 500 8 SER A 50 -71.02 -56.30 REMARK 500 8 LEU A 60 -65.72 -98.94 REMARK 500 8 LYS A 62 105.05 -173.48 REMARK 500 8 GLN A 89 -74.43 -56.22 REMARK 500 8 LEU A 91 -74.01 -61.22 REMARK 500 8 LYS A 97 -60.35 -101.68 REMARK 500 9 ALA A 18 142.19 -37.86 REMARK 500 9 PRO A 23 3.01 -69.80 REMARK 500 9 LEU A 60 -70.01 -76.83 REMARK 500 9 GLU A 64 -70.82 -39.87 REMARK 500 9 LYS A 97 -51.85 -125.58 REMARK 500 9 THR A 102 146.30 -174.82 REMARK 500 9 THR A 107 127.60 -172.05 REMARK 500 10 ALA A 18 138.34 -174.61 REMARK 500 10 GLN A 29 -37.60 -37.58 REMARK 500 10 GLN A 49 -33.65 -36.32 REMARK 500 10 LEU A 55 -70.35 -67.23 REMARK 500 10 LEU A 60 -72.01 -69.46 REMARK 500 10 GLU A 64 -73.58 -38.92 REMARK 500 10 ILE A 92 -35.65 -38.28 REMARK 500 10 PRO A 115 -174.88 -69.76 REMARK 500 11 ARG A 9 63.01 -114.95 REMARK 500 11 ALA A 14 145.39 -172.01 REMARK 500 11 ASP A 25 30.37 36.16 REMARK 500 11 LYS A 32 -32.13 -37.21 REMARK 500 11 GLN A 49 -35.53 -37.18 REMARK 500 11 SER A 50 -71.92 -63.17 REMARK 500 11 LYS A 62 106.55 -166.36 REMARK 500 12 ALA A 14 123.25 -170.89 REMARK 500 12 ALA A 18 115.70 -169.66 REMARK 500 12 HIS A 20 135.21 -172.58 REMARK 500 12 GLN A 29 -39.30 -35.23 REMARK 500 12 LYS A 32 -32.49 -39.83 REMARK 500 12 ALA A 59 -39.19 -34.76 REMARK 500 12 LYS A 104 156.01 -39.14 REMARK 500 13 LEU A 8 -74.56 -131.95 REMARK 500 13 ARG A 9 121.37 -171.44 REMARK 500 13 GLN A 11 127.24 -172.72 REMARK 500 13 ARG A 12 119.24 -170.85 REMARK 500 13 ALA A 14 144.22 -173.31 REMARK 500 13 GLN A 29 -36.38 -37.93 REMARK 500 13 LEU A 60 -62.06 -97.70 REMARK 500 13 LYS A 62 105.02 -160.96 REMARK 500 13 LEU A 82 91.03 -67.07 REMARK 500 13 LEU A 91 -70.15 -54.22 REMARK 500 13 ILE A 92 -36.23 -39.45 REMARK 500 13 THR A 102 49.51 36.56 REMARK 500 14 LYS A 19 -58.02 -121.51 REMARK 500 14 ASP A 22 141.15 -35.48 REMARK 500 14 PRO A 23 1.97 -69.71 REMARK 500 14 GLN A 49 -34.51 -34.56 REMARK 500 14 LYS A 62 115.59 -164.54 REMARK 500 14 GLU A 64 -75.09 -50.39 REMARK 500 14 THR A 66 -75.85 -41.55 REMARK 500 14 LYS A 67 -34.67 -34.97 REMARK 500 14 SER A 116 -61.06 -103.41 REMARK 500 15 HIS A 20 134.07 -171.81 REMARK 500 15 ALA A 59 -35.85 -34.88 REMARK 500 15 GLU A 70 -38.38 -39.78 REMARK 500 15 PRO A 115 -179.91 -69.72 REMARK 500 16 ARG A 12 116.98 -165.20 REMARK 500 16 ASP A 22 156.08 -47.95 REMARK 500 16 GLN A 49 -37.19 -35.29 REMARK 500 16 SER A 50 -72.33 -59.71 REMARK 500 16 LEU A 60 -73.46 -80.81 REMARK 500 16 LEU A 82 -73.82 -85.69 REMARK 500 16 THR A 102 153.06 -43.79 REMARK 500 17 SER A 6 177.47 -52.88 REMARK 500 17 LYS A 19 145.16 -174.06 REMARK 500 17 PRO A 23 1.55 -69.69 REMARK 500 17 SER A 50 -70.20 -64.47 REMARK 500 17 LEU A 60 -74.40 -82.47 REMARK 500 17 LYS A 62 105.01 -160.86 REMARK 500 17 THR A 102 39.64 37.49 REMARK 500 17 THR A 105 40.61 39.32 REMARK 500 17 THR A 106 139.96 -35.94 REMARK 500 17 LYS A 109 136.93 -171.82 REMARK 500 18 SER A 2 108.09 -165.02 REMARK 500 18 ARG A 9 75.43 -106.83 REMARK 500 18 GLU A 64 -72.13 -43.12 REMARK 500 18 LYS A 97 -38.36 -133.15 REMARK 500 18 GLN A 101 123.50 -39.02 REMARK 500 18 LYS A 104 -34.45 -39.37 REMARK 500 19 SER A 3 97.23 -62.78 REMARK 500 19 ALA A 18 149.25 -172.02 REMARK 500 19 PRO A 23 1.46 -69.72 REMARK 500 19 GLU A 35 -35.18 -39.59 REMARK 500 19 LEU A 82 92.61 -64.38 REMARK 500 19 LYS A 104 128.34 -35.12 REMARK 500 19 THR A 105 143.74 -34.19 REMARK 500 19 SER A 113 118.43 -174.30 REMARK 500 19 PRO A 115 96.62 -69.74 REMARK 500 20 PRO A 23 2.23 -69.84 REMARK 500 20 GLN A 49 -37.10 -37.00 REMARK 500 20 LEU A 60 -60.94 -94.26 REMARK 500 20 LYS A 62 105.00 -166.12 REMARK 500 20 LYS A 85 137.34 -38.01 REMARK 500 20 SER A 117 -62.46 -120.94 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002011821.1 RELATED DB: TARGETDB
DBREF 2CRU A 8 112 UNP O14737 PDCD5_HUMAN 8 112
SEQADV 2CRU GLY A 1 UNP O14737 CLONING ARTIFACT SEQADV 2CRU SER A 2 UNP O14737 CLONING ARTIFACT SEQADV 2CRU SER A 3 UNP O14737 CLONING ARTIFACT SEQADV 2CRU GLY A 4 UNP O14737 CLONING ARTIFACT SEQADV 2CRU SER A 5 UNP O14737 CLONING ARTIFACT SEQADV 2CRU SER A 6 UNP O14737 CLONING ARTIFACT SEQADV 2CRU GLY A 7 UNP O14737 CLONING ARTIFACT SEQADV 2CRU SER A 113 UNP O14737 CLONING ARTIFACT SEQADV 2CRU GLY A 114 UNP O14737 CLONING ARTIFACT SEQADV 2CRU PRO A 115 UNP O14737 CLONING ARTIFACT SEQADV 2CRU SER A 116 UNP O14737 CLONING ARTIFACT SEQADV 2CRU SER A 117 UNP O14737 CLONING ARTIFACT SEQADV 2CRU GLY A 118 UNP O14737 CLONING ARTIFACT
SEQRES 1 A 118 GLY SER SER GLY SER SER GLY LEU ARG ARG GLN ARG LEU SEQRES 2 A 118 ALA GLU LEU GLN ALA LYS HIS GLY ASP PRO GLY ASP ALA SEQRES 3 A 118 ALA GLN GLN GLU ALA LYS HIS ARG GLU ALA GLU MET ARG SEQRES 4 A 118 ASN SER ILE LEU ALA GLN VAL LEU ASP GLN SER ALA ARG SEQRES 5 A 118 ALA ARG LEU SER ASN LEU ALA LEU VAL LYS PRO GLU LYS SEQRES 6 A 118 THR LYS ALA VAL GLU ASN TYR LEU ILE GLN MET ALA ARG SEQRES 7 A 118 TYR GLY GLN LEU SER GLU LYS VAL SER GLU GLN GLY LEU SEQRES 8 A 118 ILE GLU ILE LEU LYS LYS VAL SER GLN GLN THR GLU LYS SEQRES 9 A 118 THR THR THR VAL LYS PHE ASN ARG SER GLY PRO SER SER SEQRES 10 A 118 GLY
HELIX 1 1 GLY A 24 LEU A 47 1 24 HELIX 2 2 ASP A 48 LYS A 62 1 15 HELIX 3 3 LYS A 62 GLY A 80 1 19 HELIX 4 4 SER A 87 SER A 99 1 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000