2CRM - Header Asymmetric Unit

HEADER CELL ADHESION 20-MAY-05 2CRM

TITLE SOLUTION STRUCTURE OF THE FORTH FNIII DOMAIN OF HUMAN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN TYPE-III DOMAIN CONTAINING PROTEIN COMPND 3 3A; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: FN3; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FNDC3, KIAA0970; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040628-02; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS

KEYWDS FIBRONECTIN TYPE III DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, CELL ADHESION

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR K.IZUMI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)

REVDAT 2 24-FEB-09 2CRM 1 VERSN REVDAT 1 20-NOV-05 2CRM 0

JRNL AUTH K.IZUMI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FORTH FNIII DOMAIN OF JRNL TITL 2 HUMAN JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2CRM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024547.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.79MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DELTA NMR 4.3, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9296, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 13 51.03 34.02 REMARK 500 1 SER A 34 107.39 -173.69 REMARK 500 1 ILE A 50 142.58 -34.62 REMARK 500 1 ASN A 64 99.07 -62.38 REMARK 500 1 THR A 74 122.51 -37.69 REMARK 500 1 ARG A 75 47.35 -81.50 REMARK 500 1 ASP A 97 -38.37 -34.60 REMARK 500 1 ALA A 102 145.63 -35.77 REMARK 500 1 GLU A 105 163.89 -44.94 REMARK 500 1 SER A 118 -53.87 -125.56 REMARK 500 2 SER A 2 117.26 -169.89 REMARK 500 2 SER A 6 -70.97 -130.90 REMARK 500 2 PRO A 15 -175.36 -69.84 REMARK 500 2 PRO A 18 -163.86 -69.71 REMARK 500 2 PRO A 21 -168.17 -69.74 REMARK 500 2 SER A 32 -28.85 -36.99 REMARK 500 2 HIS A 33 -69.70 -95.27 REMARK 500 2 ASP A 44 41.57 -97.54 REMARK 500 2 ILE A 50 150.45 -37.58 REMARK 500 2 ASN A 64 47.10 -100.36 REMARK 500 2 ARG A 75 46.35 -94.73 REMARK 500 2 GLU A 76 140.97 -173.43 REMARK 500 2 SER A 104 178.07 -52.48 REMARK 500 2 SER A 118 130.72 -34.58 REMARK 500 3 PRO A 15 -170.51 -69.73 REMARK 500 3 SER A 34 119.78 -175.22 REMARK 500 3 ASN A 64 43.95 -98.85 REMARK 500 3 THR A 74 135.48 -33.57 REMARK 500 3 ASP A 97 143.49 -35.85 REMARK 500 3 SER A 104 171.35 -59.84 REMARK 500 3 GLU A 105 170.33 -50.80 REMARK 500 4 THR A 12 54.22 -106.29 REMARK 500 4 PRO A 15 -168.17 -69.73 REMARK 500 4 PRO A 21 -167.06 -69.67 REMARK 500 4 SER A 32 -36.80 -33.08 REMARK 500 4 HIS A 33 -71.09 -85.86 REMARK 500 4 ASP A 44 119.54 -174.38 REMARK 500 4 ASN A 45 44.84 -88.41 REMARK 500 4 ILE A 50 146.15 -35.87 REMARK 500 4 THR A 74 140.63 -36.64 REMARK 500 4 ARG A 75 40.85 -96.07 REMARK 500 4 GLU A 76 147.11 -173.67 REMARK 500 4 GLU A 105 154.72 -45.36 REMARK 500 4 PRO A 117 2.82 -69.79 REMARK 500 4 SER A 119 106.68 -51.86 REMARK 500 5 SER A 2 41.38 -108.49 REMARK 500 5 PRO A 15 -174.06 -69.70 REMARK 500 5 SER A 34 116.88 -175.06 REMARK 500 5 ALA A 73 -66.40 -99.07 REMARK 500 5 THR A 74 140.33 -33.99 REMARK 500 5 ARG A 75 36.97 -96.84 REMARK 500 5 ASP A 97 47.88 39.11 REMARK 500 5 ALA A 102 135.00 -33.89 REMARK 500 5 SER A 104 153.77 -48.45 REMARK 500 5 GLU A 105 166.18 -45.51 REMARK 500 6 GLU A 10 117.45 -162.62 REMARK 500 6 PRO A 15 -179.35 -69.78 REMARK 500 6 ILE A 20 136.21 -34.71 REMARK 500 6 LYS A 23 135.09 -39.40 REMARK 500 6 HIS A 31 -178.94 -68.21 REMARK 500 6 SER A 34 130.70 -175.06 REMARK 500 6 ASP A 40 161.38 -42.58 REMARK 500 6 ASN A 45 146.78 -39.80 REMARK 500 6 THR A 74 126.44 -33.67 REMARK 500 6 ARG A 75 32.61 -89.87 REMARK 500 6 GLU A 105 161.64 -42.98 REMARK 500 7 GLU A 10 123.03 -171.97 REMARK 500 7 ILE A 20 132.23 -36.95 REMARK 500 7 ILE A 50 139.73 -33.99 REMARK 500 7 THR A 74 136.12 -34.09 REMARK 500 7 ALA A 102 150.94 -36.97 REMARK 500 7 GLU A 105 162.13 -46.14 REMARK 500 7 PRO A 117 84.46 -69.80 REMARK 500 8 PRO A 18 -174.57 -69.69 REMARK 500 8 SER A 34 111.60 -175.10 REMARK 500 8 ILE A 50 141.19 -34.06 REMARK 500 8 ASN A 51 -53.09 -123.23 REMARK 500 8 SER A 61 53.75 31.64 REMARK 500 8 ASN A 62 -72.75 -87.65 REMARK 500 8 ILE A 69 -35.64 -130.59 REMARK 500 8 ALA A 73 -61.16 -107.91 REMARK 500 8 THR A 74 159.99 -41.21 REMARK 500 8 TYR A 88 133.60 -170.79 REMARK 500 8 ASP A 97 74.88 -63.06 REMARK 500 8 ALA A 102 149.10 -36.47 REMARK 500 8 GLU A 105 156.61 -38.19 REMARK 500 9 SER A 6 162.05 -41.67 REMARK 500 9 PRO A 15 -176.63 -69.77 REMARK 500 9 PRO A 18 -177.53 -69.78 REMARK 500 9 HIS A 31 -175.71 -57.95 REMARK 500 9 SER A 34 117.48 -175.14 REMARK 500 9 ASP A 44 37.99 -98.86 REMARK 500 9 ASN A 45 -39.24 -34.74 REMARK 500 9 ILE A 50 145.95 -35.44 REMARK 500 9 ALA A 73 -64.25 -93.75 REMARK 500 9 THR A 74 145.63 -35.65 REMARK 500 9 GLU A 105 156.71 -42.32 REMARK 500 10 PRO A 18 0.38 -69.81 REMARK 500 10 HIS A 31 -176.20 -68.73 REMARK 500 10 SER A 34 116.79 -172.78 REMARK 500 10 ILE A 50 149.94 -39.53 REMARK 500 10 ASN A 51 -40.99 -132.68 REMARK 500 10 THR A 74 138.23 -33.78 REMARK 500 10 ARG A 75 37.38 -99.22 REMARK 500 10 ASP A 97 138.34 -36.26 REMARK 500 10 ALA A 102 147.16 -35.58 REMARK 500 10 GLU A 105 154.03 -42.82 REMARK 500 10 VAL A 114 38.90 -84.99 REMARK 500 10 SER A 118 106.17 -35.35 REMARK 500 11 VAL A 8 143.13 -174.61 REMARK 500 11 PRO A 15 -163.89 -69.73 REMARK 500 11 SER A 34 130.56 -172.20 REMARK 500 11 ASP A 40 159.35 -44.89 REMARK 500 11 SER A 61 -70.55 -109.44 REMARK 500 11 ASN A 64 45.47 -97.19 REMARK 500 11 THR A 74 121.93 -33.99 REMARK 500 11 ASP A 97 -71.23 -35.74 REMARK 500 11 SER A 104 159.22 -45.81 REMARK 500 11 GLU A 105 164.36 -44.13 REMARK 500 12 PHE A 11 -61.97 -90.21 REMARK 500 12 THR A 13 128.22 -39.91 REMARK 500 12 PRO A 15 -174.87 -69.76 REMARK 500 12 HIS A 31 -175.44 -63.15 REMARK 500 12 SER A 34 124.67 -175.19 REMARK 500 12 PRO A 42 92.74 -69.74 REMARK 500 12 ASP A 44 41.22 -89.91 REMARK 500 12 ASN A 45 171.58 -46.86 REMARK 500 12 ASN A 51 -51.86 -121.48 REMARK 500 12 ASN A 64 43.63 -88.35 REMARK 500 12 ALA A 73 -61.41 -125.17 REMARK 500 12 THR A 74 131.87 -35.26 REMARK 500 12 TYR A 88 146.46 -170.33 REMARK 500 12 ASP A 97 120.64 -37.78 REMARK 500 12 ALA A 102 149.44 -36.69 REMARK 500 12 GLU A 105 152.09 -34.99 REMARK 500 12 SER A 115 88.96 -68.02 REMARK 500 13 SER A 6 147.73 -39.89 REMARK 500 13 SER A 34 105.07 -168.71 REMARK 500 13 ASP A 40 150.36 -42.80 REMARK 500 13 LYS A 43 77.05 -58.99 REMARK 500 13 ASN A 45 40.76 34.37 REMARK 500 13 ILE A 50 160.25 -44.90 REMARK 500 13 SER A 61 46.32 -97.00 REMARK 500 13 MET A 68 134.65 -39.55 REMARK 500 13 ALA A 73 69.30 -105.88 REMARK 500 13 ARG A 75 36.36 -90.65 REMARK 500 13 ASP A 97 125.36 -34.39 REMARK 500 13 GLU A 105 158.23 -40.14 REMARK 500 14 SER A 3 91.28 -58.07 REMARK 500 14 ILE A 20 130.65 -35.35 REMARK 500 14 LYS A 23 138.10 -39.31 REMARK 500 14 HIS A 31 -174.20 -68.86 REMARK 500 14 ASP A 44 118.43 -165.44 REMARK 500 14 ASN A 45 43.49 -81.96 REMARK 500 14 ILE A 50 143.69 -38.87 REMARK 500 14 ASN A 62 124.61 -172.04 REMARK 500 14 ASN A 64 49.32 -84.81 REMARK 500 14 THR A 74 126.92 -33.88 REMARK 500 14 ARG A 81 51.84 74.99 REMARK 500 14 ASP A 97 91.74 -41.45 REMARK 500 14 ALA A 102 129.66 -33.88 REMARK 500 14 GLU A 105 162.59 -44.18 REMARK 500 15 SER A 2 109.87 -161.07 REMARK 500 15 THR A 13 40.02 35.71 REMARK 500 15 PRO A 18 0.99 -69.72 REMARK 500 15 HIS A 31 -177.79 -62.79 REMARK 500 15 SER A 34 105.39 -172.81 REMARK 500 15 ASN A 45 96.32 -57.83 REMARK 500 15 MET A 68 128.53 -36.07 REMARK 500 15 ALA A 73 66.12 -116.41 REMARK 500 15 ARG A 75 38.40 -83.41 REMARK 500 15 GLU A 105 161.00 -46.66 REMARK 500 15 SER A 118 -54.67 -120.65 REMARK 500 16 GLU A 10 42.91 -108.42 REMARK 500 16 THR A 12 45.90 34.38 REMARK 500 16 PRO A 15 -174.55 -69.83 REMARK 500 16 HIS A 31 -174.81 -68.95 REMARK 500 16 SER A 34 112.35 -175.23 REMARK 500 16 ASP A 44 112.35 -165.77 REMARK 500 16 ASN A 45 151.48 -48.58 REMARK 500 16 ASN A 62 142.32 -35.08 REMARK 500 16 ALA A 73 -64.45 -98.64 REMARK 500 16 THR A 74 138.40 -34.37 REMARK 500 16 ARG A 75 37.56 -95.68 REMARK 500 16 GLU A 105 156.02 -38.67 REMARK 500 16 PRO A 117 1.90 -69.75 REMARK 500 17 VAL A 9 39.46 -98.95 REMARK 500 17 PRO A 15 -173.42 -69.79 REMARK 500 17 PRO A 18 2.65 -69.79 REMARK 500 17 LYS A 23 128.51 -38.45 REMARK 500 17 SER A 34 119.39 -169.33 REMARK 500 17 PRO A 42 92.93 -69.77 REMARK 500 17 ASN A 62 79.12 -67.36 REMARK 500 17 ARG A 75 54.97 30.58 REMARK 500 17 GLU A 76 108.56 -174.92 REMARK 500 17 GLU A 105 158.58 -40.26 REMARK 500 18 THR A 12 42.22 -91.54 REMARK 500 18 PRO A 15 -168.33 -69.70 REMARK 500 18 PRO A 18 3.14 -69.72 REMARK 500 18 PRO A 21 -174.34 -69.75 REMARK 500 18 SER A 34 114.73 -175.22 REMARK 500 18 PRO A 42 94.79 -69.73 REMARK 500 18 ASN A 45 42.85 -88.94 REMARK 500 18 ASN A 51 -46.31 -134.26 REMARK 500 18 SER A 61 39.94 -82.11 REMARK 500 18 MET A 68 120.34 -36.41 REMARK 500 18 ALA A 73 -68.99 -128.56 REMARK 500 18 THR A 74 145.05 -38.28 REMARK 500 18 ARG A 75 40.12 -84.69 REMARK 500 18 ASP A 97 133.85 -34.41 REMARK 500 18 GLU A 105 170.35 -48.79 REMARK 500 18 SER A 115 -44.25 -131.28 REMARK 500 19 THR A 12 48.78 -104.05 REMARK 500 19 THR A 13 94.43 -45.55 REMARK 500 19 PRO A 15 -169.37 -69.72 REMARK 500 19 LYS A 23 127.59 -39.50 REMARK 500 19 ASP A 44 112.90 -171.49 REMARK 500 19 THR A 74 139.61 -35.39 REMARK 500 19 ARG A 75 41.37 -99.01 REMARK 500 19 GLU A 76 119.50 -164.71 REMARK 500 19 ASP A 97 138.70 -34.40 REMARK 500 19 ALA A 102 152.46 -44.90 REMARK 500 19 GLU A 105 160.07 -43.59 REMARK 500 20 SER A 2 42.32 39.68 REMARK 500 20 VAL A 9 51.15 37.08 REMARK 500 20 PRO A 15 -171.14 -69.71 REMARK 500 20 SER A 34 125.72 -175.19 REMARK 500 20 ASP A 44 112.98 -174.54 REMARK 500 20 ASN A 45 95.79 -42.82 REMARK 500 20 ILE A 50 150.85 -33.99 REMARK 500 20 ASN A 51 -41.68 -130.25 REMARK 500 20 ASN A 62 92.76 -61.12 REMARK 500 20 GLU A 76 109.16 -170.93 REMARK 500 20 ASP A 97 41.87 37.84 REMARK 500 20 ALA A 102 139.46 -35.09 REMARK 500 20 GLU A 105 154.57 -38.09 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100947.5 RELATED DB: TARGETDB

DBREF 2CRM A 8 114 UNP Q9Y2H6 FNDC3_HUMAN 490 596

SEQADV 2CRM GLY A 1 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 2 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 3 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM GLY A 4 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 5 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 6 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM GLY A 7 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 115 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM GLY A 116 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM PRO A 117 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 118 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 119 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM GLY A 120 UNP Q9Y2H6 CLONING ARTIFACT

SEQRES 1 A 120 GLY SER SER GLY SER SER GLY VAL VAL GLU PHE THR THR SEQRES 2 A 120 CYS PRO ASP LYS PRO GLY ILE PRO VAL LYS PRO SER VAL SEQRES 3 A 120 LYS GLY LYS ILE HIS SER HIS SER PHE LYS ILE THR TRP SEQRES 4 A 120 ASP PRO PRO LYS ASP ASN GLY GLY ALA THR ILE ASN LYS SEQRES 5 A 120 TYR VAL VAL GLU MET ALA GLU GLY SER ASN GLY ASN LYS SEQRES 6 A 120 TRP GLU MET ILE TYR SER GLY ALA THR ARG GLU HIS LEU SEQRES 7 A 120 CYS ASP ARG LEU ASN PRO GLY CYS PHE TYR ARG LEU ARG SEQRES 8 A 120 VAL TYR CYS ILE SER ASP GLY GLY GLN SER ALA VAL SER SEQRES 9 A 120 GLU SER LEU LEU VAL GLN THR PRO ALA VAL SER GLY PRO SEQRES 10 A 120 SER SER GLY

SHEET 1 A 3 SER A 25 HIS A 31 0 SHEET 2 A 3 SER A 34 THR A 38 -1 O LYS A 36 N LYS A 27 SHEET 3 A 3 GLU A 76 CYS A 79 -1 O CYS A 79 N PHE A 35 SHEET 1 B 4 GLU A 67 TYR A 70 0 SHEET 2 B 4 LYS A 52 GLU A 59 -1 N VAL A 55 O ILE A 69 SHEET 3 B 4 TYR A 88 SER A 96 -1 O ARG A 89 N ALA A 58 SHEET 4 B 4 GLY A 99 GLN A 100 -1 O GLY A 99 N SER A 96

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000