10 20 30 40 50 60 70 80 2CRF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 20-MAY-05 2CRF
TITLE SOLUTION STRUCTURE OF THE RAN_BP1 DOMAIN OF RAN-BINDING TITLE 2 PROTEIN-3
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAN BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RAN_BP1 DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RANBP3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041004-03; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS RAN_BP1 DOMAIN, RAN-BINDING PROTEIN 3, RANBP3, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSPORT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.P.ZHANG,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2CRF 1 VERSN REVDAT 1 20-NOV-05 2CRF 0
JRNL AUTH H.P.ZHANG,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RAN_BP1 DOMAIN OF JRNL TITL 2 RAN-BINDING PROTEIN-3 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CRF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024541.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.37MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL REMARK 210 (PH7.0); 200MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.04, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 118.24 -163.32 REMARK 500 1 THR A 8 109.30 -44.41 REMARK 500 1 ALA A 9 41.52 -84.64 REMARK 500 1 GLU A 23 33.45 35.04 REMARK 500 1 ALA A 25 39.26 36.40 REMARK 500 1 VAL A 29 -74.71 -55.16 REMARK 500 1 LYS A 41 -29.63 -37.69 REMARK 500 1 LEU A 67 99.38 -68.39 REMARK 500 1 SER A 78 39.69 -97.32 REMARK 500 1 LEU A 79 30.75 36.49 REMARK 500 1 LYS A 99 -31.46 -130.25 REMARK 500 1 ARG A 135 -31.34 -37.27 REMARK 500 2 GLU A 15 35.97 -83.79 REMARK 500 2 ALA A 25 41.29 -97.66 REMARK 500 2 VAL A 29 -70.61 -58.68 REMARK 500 2 LYS A 41 -27.15 -38.09 REMARK 500 2 LEU A 67 99.72 -68.87 REMARK 500 2 ASN A 84 105.69 -161.97 REMARK 500 2 GLN A 90 32.30 -84.05 REMARK 500 2 GLN A 111 35.99 39.41 REMARK 500 2 ALA A 131 -70.19 -64.88 REMARK 500 2 LEU A 132 -70.13 -37.91 REMARK 500 2 LEU A 137 -31.39 -37.70 REMARK 500 3 ALA A 9 145.34 -172.24 REMARK 500 3 CYS A 12 168.04 -47.79 REMARK 500 3 ALA A 25 43.94 -94.96 REMARK 500 3 LYS A 41 -35.16 -33.87 REMARK 500 3 GLN A 90 31.95 -84.37 REMARK 500 3 LEU A 128 -70.32 -50.58 REMARK 500 4 SER A 3 42.41 70.41 REMARK 500 4 CYS A 12 98.40 -39.15 REMARK 500 4 GLU A 15 73.12 -69.14 REMARK 500 4 GLU A 18 -36.70 -36.33 REMARK 500 4 THR A 21 153.51 -45.85 REMARK 500 4 ALA A 25 42.36 -83.14 REMARK 500 4 GLN A 44 43.03 36.86 REMARK 500 4 THR A 62 -60.62 -98.76 REMARK 500 4 GLN A 76 40.08 -81.84 REMARK 500 4 GLN A 90 31.51 -83.72 REMARK 500 4 GLN A 111 43.79 38.92 REMARK 500 4 SER A 122 -33.61 -36.30 REMARK 500 4 LEU A 132 -70.90 -53.76 REMARK 500 5 SER A 3 -49.01 -133.24 REMARK 500 5 GLU A 15 37.19 -91.82 REMARK 500 5 LYS A 41 -34.02 -33.21 REMARK 500 5 GLN A 44 48.38 38.03 REMARK 500 5 LEU A 79 75.71 -61.73 REMARK 500 5 GLN A 90 32.78 -82.87 REMARK 500 5 GLN A 111 49.00 38.87 REMARK 500 5 SER A 122 -31.94 -35.80 REMARK 500 5 ARG A 135 -27.89 -37.95 REMARK 500 6 CYS A 12 -175.35 -65.46 REMARK 500 6 LEU A 14 165.76 -43.90 REMARK 500 6 GLU A 18 -37.74 -37.63 REMARK 500 6 ALA A 25 42.87 -83.08 REMARK 500 6 ASN A 84 106.55 -162.83 REMARK 500 6 GLN A 90 32.01 -82.62 REMARK 500 6 SER A 145 79.77 -104.45 REMARK 500 7 LYS A 16 151.90 -43.35 REMARK 500 7 GLU A 18 -33.42 -39.33 REMARK 500 7 ALA A 25 34.70 37.44 REMARK 500 7 VAL A 29 -75.65 -38.43 REMARK 500 7 LYS A 41 -29.17 -39.09 REMARK 500 7 LEU A 79 38.18 36.84 REMARK 500 7 GLN A 90 31.18 -80.33 REMARK 500 7 SER A 122 -36.13 -37.77 REMARK 500 7 ARG A 135 -36.98 -35.89 REMARK 500 7 SER A 148 -61.61 -101.50 REMARK 500 8 LEU A 13 48.59 71.32 REMARK 500 8 GLU A 15 36.73 34.91 REMARK 500 8 THR A 21 -75.35 -86.24 REMARK 500 8 THR A 62 -69.70 -98.00 REMARK 500 8 LEU A 79 46.90 39.85 REMARK 500 8 GLN A 111 51.60 34.81 REMARK 500 8 SER A 122 -35.16 -37.32 REMARK 500 8 THR A 125 -35.09 -36.05 REMARK 500 8 ALA A 130 -19.08 -48.94 REMARK 500 8 ARG A 135 -30.33 -36.01 REMARK 500 9 GLU A 18 -39.38 -37.09 REMARK 500 9 THR A 21 -74.69 -80.74 REMARK 500 9 GLU A 23 43.79 -95.26 REMARK 500 9 ALA A 25 26.03 44.95 REMARK 500 9 LYS A 41 -27.85 -37.88 REMARK 500 9 LEU A 67 99.90 -68.30 REMARK 500 9 LEU A 79 53.31 37.70 REMARK 500 9 ASN A 84 105.82 -163.38 REMARK 500 9 GLN A 90 32.31 -83.93 REMARK 500 9 SER A 122 -35.30 -35.97 REMARK 500 9 SER A 148 99.09 -44.02 REMARK 500 10 CYS A 12 115.56 -173.00 REMARK 500 10 GLU A 18 -33.02 -39.66 REMARK 500 10 GLU A 26 -175.85 -66.02 REMARK 500 10 LYS A 41 -38.85 -31.38 REMARK 500 10 LEU A 67 99.49 -68.43 REMARK 500 10 GLN A 76 39.97 -92.33 REMARK 500 10 LEU A 79 53.51 37.28 REMARK 500 10 GLN A 90 32.45 -83.19 REMARK 500 10 ALA A 130 -33.28 -37.88 REMARK 500 10 LEU A 132 -71.33 -49.28 REMARK 500 10 HIS A 133 -70.38 -33.88 REMARK 500 10 PRO A 147 2.82 -69.77 REMARK 500 11 SER A 2 131.50 -171.46 REMARK 500 11 ALA A 9 148.56 -174.94 REMARK 500 11 GLU A 15 38.72 36.95 REMARK 500 11 GLU A 18 -37.65 -38.07 REMARK 500 11 ALA A 25 42.38 -94.49 REMARK 500 11 VAL A 29 -73.11 -51.01 REMARK 500 11 LYS A 41 -31.11 -35.53 REMARK 500 11 LEU A 79 41.36 -81.40 REMARK 500 11 TYR A 129 -71.68 -60.09 REMARK 500 11 ARG A 135 -31.62 -35.97 REMARK 500 11 ARG A 140 -19.77 -47.79 REMARK 500 11 GLU A 144 51.73 -103.87 REMARK 500 12 SER A 6 105.12 -39.15 REMARK 500 12 ARG A 10 40.62 -97.20 REMARK 500 12 GLU A 18 -33.41 -34.74 REMARK 500 12 LYS A 41 -29.17 -39.06 REMARK 500 12 ARG A 49 -45.59 -132.42 REMARK 500 12 LEU A 79 47.50 35.14 REMARK 500 12 ILE A 82 -30.14 -134.88 REMARK 500 12 GLN A 90 31.42 -82.51 REMARK 500 12 ALA A 130 -35.51 -38.26 REMARK 500 12 SER A 148 132.61 -34.47 REMARK 500 13 ALA A 9 -175.58 -62.56 REMARK 500 13 GLU A 15 75.06 -62.39 REMARK 500 13 ALA A 25 41.69 -93.94 REMARK 500 13 GLU A 48 108.37 -49.66 REMARK 500 13 LEU A 67 99.20 -65.74 REMARK 500 13 GLN A 76 30.33 -91.68 REMARK 500 13 SER A 121 158.89 -48.91 REMARK 500 13 SER A 145 98.15 -61.18 REMARK 500 14 GLU A 15 70.81 -69.95 REMARK 500 14 THR A 21 160.76 -43.45 REMARK 500 14 ALA A 25 35.56 -92.54 REMARK 500 14 LYS A 41 -27.02 -38.07 REMARK 500 14 LEU A 79 50.22 36.96 REMARK 500 14 ILE A 82 -31.12 -134.96 REMARK 500 14 ASN A 84 105.10 -169.29 REMARK 500 14 GLN A 90 26.91 -78.72 REMARK 500 14 LYS A 99 -33.13 -132.70 REMARK 500 14 GLN A 111 46.30 35.63 REMARK 500 14 PRO A 147 1.79 -69.76 REMARK 500 14 SER A 148 108.63 -34.84 REMARK 500 15 CYS A 12 80.97 -65.20 REMARK 500 15 GLU A 15 41.60 -82.16 REMARK 500 15 ALA A 25 43.00 -82.94 REMARK 500 15 LYS A 41 -34.62 -33.72 REMARK 500 15 LEU A 67 99.83 -64.74 REMARK 500 15 LEU A 79 47.81 37.28 REMARK 500 15 GLN A 90 32.11 -84.63 REMARK 500 15 ASP A 124 -39.07 -38.04 REMARK 500 15 ALA A 131 -72.74 -63.49 REMARK 500 15 LEU A 137 -37.92 -39.36 REMARK 500 15 SER A 145 97.26 -67.63 REMARK 500 16 LYS A 11 41.22 35.72 REMARK 500 16 GLU A 15 72.14 -69.32 REMARK 500 16 ILE A 20 153.40 -48.19 REMARK 500 16 GLU A 24 25.45 38.66 REMARK 500 16 LYS A 41 -33.73 -33.37 REMARK 500 16 ASN A 84 105.02 -161.58 REMARK 500 16 GLN A 90 32.54 -84.06 REMARK 500 16 SER A 145 43.33 -83.30 REMARK 500 17 SER A 6 172.84 -58.20 REMARK 500 17 GLU A 15 72.12 -66.85 REMARK 500 17 GLU A 18 -35.82 -34.50 REMARK 500 17 ALA A 25 42.14 -102.67 REMARK 500 17 LYS A 41 -26.61 -38.40 REMARK 500 17 LEU A 67 99.43 -66.52 REMARK 500 17 LEU A 79 71.22 -68.19 REMARK 500 17 GLN A 90 32.11 -85.08 REMARK 500 17 LYS A 95 93.64 -62.84 REMARK 500 17 GLN A 111 47.23 34.54 REMARK 500 17 SER A 122 -32.25 -37.10 REMARK 500 17 LEU A 132 -70.88 -37.98 REMARK 500 17 ARG A 135 -39.86 -35.99 REMARK 500 18 ALA A 9 147.66 -174.67 REMARK 500 18 GLU A 23 46.98 37.14 REMARK 500 18 GLU A 24 109.37 -175.57 REMARK 500 18 LYS A 41 -33.17 -33.95 REMARK 500 18 LEU A 67 99.38 -65.50 REMARK 500 18 GLN A 90 29.61 -78.93 REMARK 500 19 LYS A 16 173.33 -47.19 REMARK 500 19 GLU A 26 164.42 -41.38 REMARK 500 19 LYS A 41 -33.84 -33.54 REMARK 500 19 GLN A 76 170.48 -47.87 REMARK 500 19 GLN A 90 32.76 -83.35 REMARK 500 19 ARG A 135 -29.38 -36.85 REMARK 500 20 SER A 5 178.09 -55.32 REMARK 500 20 THR A 8 -54.56 -131.80 REMARK 500 20 GLU A 23 46.04 35.08 REMARK 500 20 GLU A 26 -176.27 -50.92 REMARK 500 20 LYS A 41 -32.52 -34.38 REMARK 500 20 GLN A 44 31.71 70.30 REMARK 500 20 LEU A 67 99.99 -64.49 REMARK 500 20 LEU A 79 53.56 37.81 REMARK 500 20 GLN A 90 32.58 -83.14 REMARK 500 20 GLN A 111 50.07 34.76 REMARK 500 20 SER A 122 -31.31 -37.79 REMARK 500 20 ARG A 135 -33.26 -37.02 REMARK 500 20 SER A 145 110.55 -170.22 REMARK 500 20 SER A 148 96.84 -61.47 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001002253.1 RELATED DB: TARGETDB
DBREF 2CRF A 8 144 UNP Q9H6Z4 RANB3_HUMAN 375 511
SEQADV 2CRF GLY A 1 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF SER A 2 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF SER A 3 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF GLY A 4 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF SER A 5 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF SER A 6 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF GLY A 7 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF SER A 145 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF GLY A 146 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF PRO A 147 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF SER A 148 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF SER A 149 UNP Q9H6Z4 CLONING ARTIFACT SEQADV 2CRF GLY A 150 UNP Q9H6Z4 CLONING ARTIFACT
SEQRES 1 A 150 GLY SER SER GLY SER SER GLY THR ALA ARG LYS CYS LEU SEQRES 2 A 150 LEU GLU LYS VAL GLU VAL ILE THR GLY GLU GLU ALA GLU SEQRES 3 A 150 SER ASN VAL LEU GLN MET GLN CYS LYS LEU PHE VAL PHE SEQRES 4 A 150 ASP LYS THR SER GLN SER TRP VAL GLU ARG GLY ARG GLY SEQRES 5 A 150 LEU LEU ARG LEU ASN ASP MET ALA SER THR ASP ASP GLY SEQRES 6 A 150 THR LEU GLN SER ARG LEU VAL MET ARG THR GLN GLY SER SEQRES 7 A 150 LEU ARG LEU ILE LEU ASN THR LYS LEU TRP ALA GLN MET SEQRES 8 A 150 GLN ILE ASP LYS ALA SER GLU LYS SER ILE HIS ILE THR SEQRES 9 A 150 ALA MET ASP THR GLU ASP GLN GLY VAL LYS VAL PHE LEU SEQRES 10 A 150 ILE SER ALA SER SER LYS ASP THR GLY GLN LEU TYR ALA SEQRES 11 A 150 ALA LEU HIS HIS ARG ILE LEU ALA LEU ARG SER ARG VAL SEQRES 12 A 150 GLU SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 124 VAL A 143 1 20
SHEET 1 A 7 SER A 27 ASP A 40 0 SHEET 2 A 7 SER A 45 ALA A 60 -1 SHEET 3 A 7 LEU A 67 THR A 75 -1 SHEET 4 A 7 LEU A 81 LYS A 86 -1 SHEET 5 A 7 SER A 100 MET A 106 -1 SHEET 6 A 7 VAL A 113 SER A 119 -1
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000