10 20 30 40 50 60 70 80 2CR8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL CYCLE 20-MAY-05 2CR8
TITLE SOLUTION STRUCTURE OF THE ZF-RANBP DOMAIN OF P53-BINDING TITLE 2 PROTEIN MDM4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MDM4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-RANBP DOMAIN; COMPND 5 SYNONYM: P53-BINDING PROTEIN MDM4, MDM2-LIKE P53-BINDING COMPND 6 PROTEIN, MDMX PROTEIN, DOUBLE MINUTE 4 PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDM4; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040809-07; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS ZF-RANBP DOMAIN; MDM4 PROTEIN; P53-BINDING PROTEIN MDM4; KEYWDS 2 MDM2-LIKE P53-BINDING DE PROTEIN; MDMX PROTEIN; DOUBLE KEYWDS 3 MINUTE 4 PROTEIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 5 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL KEYWDS 6 CYCLE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.P.ZHANG,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2CR8 1 VERSN REVDAT 1 20-NOV-05 2CR8 0
JRNL AUTH H.P.ZHANG,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZF-RANBP DOMAIN OF JRNL TITL 2 P53-BINDING PROTEIN MDM4 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CR8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024535.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.42MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL REMARK 210 (PH7.0); 200MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 0.01MM ZNCL2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.04, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 42.32 35.43 REMARK 500 1 GLU A 9 40.50 -109.06 REMARK 500 1 ASP A 10 40.74 -106.36 REMARK 500 1 CYS A 42 -50.68 -130.52 REMARK 500 1 PRO A 50 -174.27 -69.71 REMARK 500 2 TRP A 32 52.44 34.03 REMARK 500 2 ARG A 35 167.81 -44.25 REMARK 500 3 SER A 6 148.49 -36.10 REMARK 500 3 CYS A 28 116.82 -33.19 REMARK 500 3 PHE A 29 40.05 -82.17 REMARK 500 3 ARG A 30 -40.66 -134.60 REMARK 500 3 ARG A 35 -75.32 -54.13 REMARK 500 3 ASP A 37 42.03 -86.62 REMARK 500 3 LEU A 45 111.82 -38.58 REMARK 500 3 SER A 51 -50.29 -128.34 REMARK 500 3 SER A 52 41.80 39.88 REMARK 500 4 SER A 8 94.83 -65.65 REMARK 500 4 LYS A 18 28.38 38.94 REMARK 500 4 ARG A 26 -63.81 -121.04 REMARK 500 4 TRP A 32 54.62 34.00 REMARK 500 4 LYS A 44 41.24 -96.57 REMARK 500 4 SER A 52 -49.41 -133.74 REMARK 500 5 PRO A 23 2.72 -69.79 REMARK 500 5 TRP A 32 41.55 34.38 REMARK 500 5 SER A 43 137.54 -37.01 REMARK 500 5 SER A 48 149.07 -174.41 REMARK 500 5 SER A 52 41.95 37.17 REMARK 500 6 SER A 8 139.78 -170.22 REMARK 500 6 GLU A 9 153.58 -37.19 REMARK 500 6 LYS A 18 26.65 40.52 REMARK 500 6 PRO A 23 5.88 -69.72 REMARK 500 6 ARG A 30 -33.71 -133.41 REMARK 500 6 TRP A 32 48.38 37.16 REMARK 500 6 ASP A 37 121.54 -35.82 REMARK 500 7 SER A 6 43.29 70.74 REMARK 500 7 ASP A 10 43.77 -82.64 REMARK 500 7 LYS A 18 26.99 40.07 REMARK 500 7 ARG A 30 -35.34 -134.87 REMARK 500 7 TRP A 32 49.37 34.75 REMARK 500 7 LEU A 34 155.34 -43.47 REMARK 500 8 SER A 2 42.16 -98.38 REMARK 500 8 PRO A 23 2.81 -69.70 REMARK 500 8 TRP A 32 38.80 31.72 REMARK 500 8 ARG A 35 43.62 -81.63 REMARK 500 9 GLU A 16 -52.12 -128.81 REMARK 500 9 ARG A 30 -35.33 -134.66 REMARK 500 9 TRP A 32 48.74 33.69 REMARK 500 9 ARG A 35 102.05 -33.96 REMARK 500 9 PRO A 50 88.22 -69.78 REMARK 500 10 LYS A 18 37.37 33.90 REMARK 500 10 SER A 22 139.04 -37.13 REMARK 500 10 PRO A 23 3.60 -69.76 REMARK 500 10 SER A 24 -60.95 -104.53 REMARK 500 10 ARG A 30 -42.21 -132.13 REMARK 500 10 TRP A 32 51.86 31.83 REMARK 500 10 ARG A 35 92.73 -57.03 REMARK 500 10 CYS A 42 42.85 -84.30 REMARK 500 11 LYS A 18 49.03 70.06 REMARK 500 11 PHE A 20 123.73 -37.65 REMARK 500 11 PRO A 23 4.52 -69.81 REMARK 500 11 PHE A 29 31.49 -82.23 REMARK 500 11 ARG A 30 -45.55 -134.92 REMARK 500 11 TRP A 32 53.17 35.20 REMARK 500 11 ARG A 35 102.29 -57.42 REMARK 500 12 LYS A 18 32.25 37.57 REMARK 500 12 TRP A 32 52.74 33.75 REMARK 500 12 TRP A 38 113.94 -37.42 REMARK 500 12 CYS A 42 125.70 -35.11 REMARK 500 12 LEU A 45 96.10 -69.01 REMARK 500 13 SER A 2 123.10 -38.55 REMARK 500 13 SER A 5 92.22 -60.46 REMARK 500 13 GLU A 16 -40.87 -134.64 REMARK 500 13 LYS A 18 44.18 35.22 REMARK 500 13 PRO A 23 4.08 -69.75 REMARK 500 13 TYR A 39 108.02 -42.73 REMARK 500 13 CYS A 42 -39.34 -39.53 REMARK 500 13 SER A 48 95.28 -66.16 REMARK 500 14 PRO A 23 4.83 -69.76 REMARK 500 14 PHE A 29 33.99 -81.96 REMARK 500 14 ARG A 30 -38.89 -134.70 REMARK 500 14 ARG A 35 124.37 -37.89 REMARK 500 14 ASP A 41 91.65 -57.48 REMARK 500 14 SER A 43 42.12 71.57 REMARK 500 15 SER A 8 42.18 -103.69 REMARK 500 15 GLU A 16 -70.59 -75.95 REMARK 500 15 PHE A 20 132.72 -36.04 REMARK 500 15 PHE A 29 33.14 -83.10 REMARK 500 15 ARG A 30 -38.40 -134.50 REMARK 500 15 THR A 46 137.00 -37.19 REMARK 500 15 HIS A 47 101.21 -59.46 REMARK 500 16 GLU A 9 146.95 -38.48 REMARK 500 16 PRO A 23 3.09 -69.74 REMARK 500 16 LYS A 25 161.80 -48.28 REMARK 500 16 CYS A 28 112.87 -34.83 REMARK 500 16 PHE A 29 35.76 -83.70 REMARK 500 16 ARG A 30 -38.48 -133.20 REMARK 500 16 LEU A 34 148.92 -38.89 REMARK 500 16 ASP A 37 125.81 -37.01 REMARK 500 16 ASP A 41 44.89 38.72 REMARK 500 16 HIS A 47 41.28 -97.97 REMARK 500 17 THR A 15 30.74 -84.79 REMARK 500 17 GLU A 16 -46.26 -133.39 REMARK 500 17 ARG A 30 -38.15 -134.38 REMARK 500 17 TRP A 32 54.98 31.77 REMARK 500 17 LEU A 34 178.49 -52.28 REMARK 500 17 TYR A 39 168.94 -44.99 REMARK 500 17 SER A 43 133.48 -174.23 REMARK 500 18 SER A 2 143.49 -38.66 REMARK 500 18 LYS A 18 28.87 45.31 REMARK 500 18 PRO A 23 2.97 -69.76 REMARK 500 18 PHE A 29 30.80 -84.00 REMARK 500 18 ARG A 30 -39.12 -131.75 REMARK 500 18 ARG A 35 150.08 -49.21 REMARK 500 18 SER A 52 43.10 34.86 REMARK 500 19 SER A 3 -63.10 -97.08 REMARK 500 19 SER A 5 -66.52 -92.81 REMARK 500 19 THR A 15 30.99 -85.85 REMARK 500 19 GLU A 16 -43.83 -133.07 REMARK 500 19 PHE A 29 31.20 -84.21 REMARK 500 19 ARG A 30 -39.70 -134.95 REMARK 500 19 TRP A 32 48.03 34.44 REMARK 500 19 LEU A 34 159.02 -44.76 REMARK 500 19 PRO A 50 3.57 -69.80 REMARK 500 19 SER A 51 39.99 74.11 REMARK 500 20 SER A 8 83.48 -68.32 REMARK 500 20 GLU A 9 42.21 -91.41 REMARK 500 20 GLU A 16 -66.31 -92.09 REMARK 500 20 PRO A 23 2.86 -69.78 REMARK 500 20 TRP A 32 55.03 33.64 REMARK 500 20 TRP A 38 55.08 34.20 REMARK 500 20 LEU A 45 -54.04 -122.45 REMARK 500 20 THR A 46 163.19 -43.08 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 14 SG REMARK 620 2 CYS A 17 SG 111.9 REMARK 620 3 CYS A 28 SG 102.1 106.1 REMARK 620 4 CYS A 31 SG 105.0 117.2 113.6 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003497.1 RELATED DB: TARGETDB
DBREF 2CR8 A 8 47 UNP O15151 MDM4_HUMAN 300 339
SEQADV 2CR8 GLY A 1 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 SER A 2 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 SER A 3 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 GLY A 4 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 SER A 5 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 SER A 6 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 GLY A 7 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 SER A 48 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 GLY A 49 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 PRO A 50 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 SER A 51 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 SER A 52 UNP O15151 CLONING ARTIFACT SEQADV 2CR8 GLY A 53 UNP O15151 CLONING ARTIFACT
SEQRES 1 A 53 GLY SER SER GLY SER SER GLY SER GLU ASP GLU TRP GLN SEQRES 2 A 53 CYS THR GLU CYS LYS LYS PHE ASN SER PRO SER LYS ARG SEQRES 3 A 53 TYR CYS PHE ARG CYS TRP ALA LEU ARG LYS ASP TRP TYR SEQRES 4 A 53 SER ASP CYS SER LYS LEU THR HIS SER GLY PRO SER SER SEQRES 5 A 53 GLY
HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
LINK ZN ZN A 401 SG CYS A 14 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 17 1555 1555 2.25 LINK ZN ZN A 401 SG CYS A 28 1555 1555 2.34 LINK ZN ZN A 401 SG CYS A 31 1555 1555 2.25
SITE 1 AC1 4 CYS A 14 CYS A 17 CYS A 28 CYS A 31
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000