10 20 30 40 50 60 70 80 2CQH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 20-MAY-05 2CQH
TITLE SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF IGF-II MRNA- TITLE 2 BINDING PROTEIN 2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGF-II MRNA-BINDING PROTEIN 2 ISOFORM A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: INSULIN-LIKE GROWTH FACTOR 2 MRNA-BINDING PROTEIN COMPND 6 2; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IMP2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041108-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, RBD, RNP, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2CQH 1 VERSN REVDAT 1 20-NOV-05 2CQH 0
JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF JRNL TITL 2 IGF-II MRNA-BINDING PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CQH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024508.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, OLIVIA 1.10.5, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 0 150.45 -38.59 REMARK 500 1 ASN A 9 41.16 70.83 REMARK 500 1 PRO A 12 0.00 -69.78 REMARK 500 1 ALA A 31 30.70 -89.68 REMARK 500 1 SER A 38 92.02 -67.60 REMARK 500 1 LEU A 58 -71.71 -100.35 REMARK 500 1 SER A 74 86.22 -68.62 REMARK 500 1 SER A 76 -60.05 -122.08 REMARK 500 1 LYS A 77 43.40 39.76 REMARK 500 1 PRO A 84 -172.08 -69.77 REMARK 500 2 SER A 11 143.61 -39.91 REMARK 500 2 PRO A 12 2.89 -69.70 REMARK 500 2 SER A 38 92.27 -67.91 REMARK 500 2 LEU A 58 -73.29 -97.18 REMARK 500 3 MET A 2 150.71 -43.64 REMARK 500 3 ASN A 9 41.22 71.49 REMARK 500 3 ALA A 31 34.44 -85.41 REMARK 500 3 SER A 38 92.66 -67.95 REMARK 500 3 LEU A 58 -67.66 -99.69 REMARK 500 3 TYR A 73 153.75 -38.69 REMARK 500 3 LYS A 77 107.55 -168.79 REMARK 500 4 ASN A 9 42.96 70.38 REMARK 500 4 SER A 11 151.19 -41.85 REMARK 500 4 PRO A 12 0.14 -69.71 REMARK 500 4 ALA A 31 37.31 -84.49 REMARK 500 4 SER A 38 92.38 -67.78 REMARK 500 4 LEU A 58 -74.23 -102.27 REMARK 500 4 TYR A 73 152.42 -40.71 REMARK 500 5 SER A -4 -61.90 -125.71 REMARK 500 5 SER A -3 96.49 -57.25 REMARK 500 5 PRO A 12 0.29 -69.83 REMARK 500 5 LEU A 30 100.40 -58.23 REMARK 500 5 ALA A 31 36.08 -83.46 REMARK 500 5 SER A 38 91.36 -68.36 REMARK 500 5 LEU A 58 -67.86 -101.61 REMARK 500 5 TYR A 73 148.28 -37.68 REMARK 500 6 ASN A 3 107.92 -52.19 REMARK 500 6 ASN A 9 35.67 73.90 REMARK 500 6 ALA A 31 34.49 -94.74 REMARK 500 6 SER A 38 91.08 -68.28 REMARK 500 6 LEU A 58 -67.08 -95.19 REMARK 500 6 SER A 74 44.03 -101.95 REMARK 500 7 SER A -4 109.66 -170.04 REMARK 500 7 SER A 11 150.95 -46.27 REMARK 500 7 LEU A 28 77.82 -113.21 REMARK 500 7 ALA A 31 31.36 -84.42 REMARK 500 7 SER A 38 96.14 -67.24 REMARK 500 7 LEU A 58 -72.70 -104.27 REMARK 500 7 TYR A 73 144.63 -34.49 REMARK 500 7 LYS A 77 176.52 -51.29 REMARK 500 7 ARG A 80 89.61 -66.05 REMARK 500 8 ASN A 9 46.47 73.08 REMARK 500 8 LEU A 28 78.71 -115.94 REMARK 500 8 SER A 38 86.90 -69.16 REMARK 500 8 LEU A 58 -72.07 -101.16 REMARK 500 9 SER A -3 108.08 -54.51 REMARK 500 9 ASN A 3 107.99 -54.54 REMARK 500 9 ASN A 9 41.35 70.83 REMARK 500 9 ALA A 31 35.11 -86.75 REMARK 500 9 SER A 38 94.99 -67.03 REMARK 500 9 LEU A 58 -71.70 -90.78 REMARK 500 9 SER A 74 56.22 -96.18 REMARK 500 9 LEU A 79 108.03 -57.42 REMARK 500 10 ASN A 9 40.82 72.30 REMARK 500 10 PRO A 12 0.56 -69.71 REMARK 500 10 ALA A 31 38.52 -83.00 REMARK 500 10 SER A 38 94.74 -67.31 REMARK 500 10 LEU A 58 -69.07 -96.71 REMARK 500 10 SER A 74 81.75 -65.26 REMARK 500 10 PRO A 84 -177.89 -69.85 REMARK 500 11 SER A -4 41.66 38.36 REMARK 500 11 SER A -1 125.87 -37.80 REMARK 500 11 SER A 0 142.44 -36.16 REMARK 500 11 ALA A 31 36.28 -87.58 REMARK 500 11 SER A 38 94.62 -67.42 REMARK 500 11 LEU A 58 -75.05 -103.84 REMARK 500 11 TYR A 73 132.67 -36.20 REMARK 500 11 SER A 74 48.11 -85.04 REMARK 500 12 SER A -1 42.48 -106.03 REMARK 500 12 SER A 11 154.92 -47.77 REMARK 500 12 ALA A 31 37.29 -82.63 REMARK 500 12 SER A 38 90.73 -68.00 REMARK 500 12 LEU A 58 -70.26 -102.43 REMARK 500 12 TYR A 73 148.31 -35.42 REMARK 500 12 SER A 74 42.37 -100.31 REMARK 500 12 SER A 81 137.17 -173.54 REMARK 500 13 PRO A 12 2.80 -69.74 REMARK 500 13 LEU A 30 100.24 -57.40 REMARK 500 13 ALA A 31 41.11 -86.21 REMARK 500 13 SER A 38 90.29 -68.31 REMARK 500 13 LEU A 58 -70.90 -99.86 REMARK 500 13 TYR A 73 136.59 -34.54 REMARK 500 13 SER A 74 41.34 -94.96 REMARK 500 13 VAL A 75 39.68 -84.04 REMARK 500 14 ASN A 9 45.04 71.98 REMARK 500 14 PRO A 12 0.29 -69.70 REMARK 500 14 SER A 38 89.76 -69.21 REMARK 500 14 LEU A 58 -68.74 -97.49 REMARK 500 14 SER A 59 108.69 -53.65 REMARK 500 14 TYR A 73 123.69 -39.15 REMARK 500 14 LYS A 77 132.78 -171.83 REMARK 500 14 ARG A 80 113.76 -163.19 REMARK 500 15 SER A 38 93.17 -67.00 REMARK 500 15 LEU A 58 -73.45 -100.18 REMARK 500 15 TYR A 73 153.79 -44.15 REMARK 500 15 SER A 74 53.48 -94.42 REMARK 500 15 LYS A 77 119.07 -171.50 REMARK 500 15 ARG A 80 152.24 -40.14 REMARK 500 16 ASN A 9 50.11 74.82 REMARK 500 16 SER A 11 150.46 -44.14 REMARK 500 16 ALA A 31 39.85 -87.06 REMARK 500 16 SER A 38 89.36 -68.78 REMARK 500 16 LEU A 58 -71.96 -100.37 REMARK 500 16 SER A 81 100.96 -36.54 REMARK 500 17 SER A 11 151.58 -45.67 REMARK 500 17 ALA A 31 42.08 -86.46 REMARK 500 17 SER A 38 90.14 -68.34 REMARK 500 17 LEU A 58 -71.57 -97.63 REMARK 500 17 VAL A 75 46.08 33.82 REMARK 500 17 SER A 76 47.17 -84.40 REMARK 500 18 SER A -1 97.25 -60.79 REMARK 500 18 ASN A 9 41.14 71.08 REMARK 500 18 PRO A 12 2.02 -69.70 REMARK 500 18 ALA A 31 31.10 -97.53 REMARK 500 18 SER A 38 88.61 -69.17 REMARK 500 18 LEU A 58 -74.48 -94.26 REMARK 500 18 TYR A 73 139.99 -35.67 REMARK 500 18 SER A 85 108.87 -50.44 REMARK 500 18 SER A 86 106.65 -55.30 REMARK 500 19 SER A 0 93.60 -57.63 REMARK 500 19 ASN A 9 44.87 72.86 REMARK 500 19 SER A 11 152.76 -48.89 REMARK 500 19 PRO A 12 0.74 -69.82 REMARK 500 19 ALA A 31 34.16 -93.09 REMARK 500 19 SER A 38 92.17 -67.87 REMARK 500 19 LEU A 58 -71.15 -97.42 REMARK 500 19 TYR A 73 126.73 -35.69 REMARK 500 19 SER A 76 -70.13 -125.42 REMARK 500 19 LYS A 77 106.22 -173.96 REMARK 500 19 LYS A 78 137.05 -36.34 REMARK 500 19 SER A 82 -71.73 -101.52 REMARK 500 20 MET A 2 128.28 -37.43 REMARK 500 20 SER A 11 151.54 -49.89 REMARK 500 20 ALA A 31 32.36 -95.52 REMARK 500 20 SER A 38 84.81 -69.51 REMARK 500 20 LEU A 58 -74.07 -96.59 REMARK 500 20 TYR A 73 139.71 -36.59 REMARK 500 20 SER A 74 58.86 -93.27 REMARK 500 20 LYS A 77 138.44 -172.24 REMARK 500 20 SER A 86 137.55 -170.59 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002013968.1 RELATED DB: TARGETDB
DBREF 2CQH A 2 81 UNP Q9Y6M1 Q9Y6M1_HUMAN 2 81
SEQADV 2CQH GLY A -5 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH SER A -4 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH SER A -3 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH GLY A -2 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH SER A -1 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH SER A 0 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH GLY A 1 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH SER A 82 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH GLY A 83 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH PRO A 84 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH SER A 85 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH SER A 86 UNP Q9Y6M1 CLONING ARTIFACT SEQADV 2CQH GLY A 87 UNP Q9Y6M1 CLONING ARTIFACT
SEQRES 1 A 93 GLY SER SER GLY SER SER GLY MET ASN LYS LEU TYR ILE SEQRES 2 A 93 GLY ASN LEU SER PRO ALA VAL THR ALA ASP ASP LEU ARG SEQRES 3 A 93 GLN LEU PHE GLY ASP ARG LYS LEU PRO LEU ALA GLY GLN SEQRES 4 A 93 VAL LEU LEU LYS SER GLY TYR ALA PHE VAL ASP TYR PRO SEQRES 5 A 93 ASP GLN ASN TRP ALA ILE ARG ALA ILE GLU THR LEU SER SEQRES 6 A 93 GLY LYS VAL GLU LEU HIS GLY LYS ILE MET GLU VAL ASP SEQRES 7 A 93 TYR SER VAL SER LYS LYS LEU ARG SER SER GLY PRO SER SEQRES 8 A 93 SER GLY
HELIX 1 1 ALA A 16 ARG A 26 1 11 HELIX 2 2 GLN A 48 THR A 57 1 10
SHEET 1 A 4 LYS A 4 GLY A 8 0 SHEET 2 A 4 GLN A 33 LYS A 37 -1 SHEET 3 A 4 TYR A 40 ASP A 44 -1 SHEET 4 A 4 GLU A 63 LEU A 64 -1 SHEET 1 B 2 LYS A 67 ILE A 68 0 SHEET 2 B 2 GLU A 70 TYR A 73 -1
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000