10 20 30 40 50 60 70 80 2CQB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 19-MAY-05 2CQB
TITLE SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF IN PEPTIDYL- TITLE 2 PROLYL CIS-TRANS ISOMERASE E
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: PPIASE E, ROTAMASE E, CYCLOPHILIN E, CYCLOPHILIN COMPND 6 33; COMPND 7 EC: 5.2.1.8; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIE; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040517-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, ISOMERASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.SOMEYA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2CQB 1 VERSN REVDAT 1 19-NOV-05 2CQB 0
JRNL AUTH T.SOMEYA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF IN JRNL TITL 2 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CQB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024502.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.16MM PROTEIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 66 -74.91 -92.11 REMARK 500 1 MET A 85 175.04 -53.91 REMARK 500 1 ARG A 86 105.08 -170.27 REMARK 500 1 SER A 94 41.98 37.85 REMARK 500 2 ARG A 47 42.08 -82.70 REMARK 500 2 ALA A 50 -176.08 -175.16 REMARK 500 2 ASN A 66 -74.30 -90.85 REMARK 500 3 SER A -2 175.36 -56.08 REMARK 500 3 ILE A 32 100.21 -51.61 REMARK 500 3 ARG A 47 42.95 -87.06 REMARK 500 3 ASP A 65 -27.00 -39.24 REMARK 500 3 ASN A 66 -73.46 -99.40 REMARK 500 3 ASN A 68 115.76 -36.21 REMARK 500 3 LYS A 88 110.14 -170.27 REMARK 500 4 THR A 3 -43.95 -134.40 REMARK 500 4 THR A 4 112.70 -166.02 REMARK 500 4 ASP A 65 -28.47 -39.92 REMARK 500 4 ASN A 66 -71.28 -98.07 REMARK 500 4 ASN A 68 117.25 -35.18 REMARK 500 4 ALA A 82 158.07 -49.33 REMARK 500 4 ARG A 86 129.26 -172.91 REMARK 500 4 ILE A 87 69.21 -118.59 REMARK 500 4 PRO A 92 3.27 -69.80 REMARK 500 4 SER A 93 50.95 74.82 REMARK 500 5 ASP A 19 -31.61 -39.19 REMARK 500 5 PHE A 29 -73.64 -39.47 REMARK 500 5 ASN A 66 -74.91 -93.82 REMARK 500 5 MET A 85 142.25 -39.07 REMARK 500 5 LYS A 88 36.35 -82.81 REMARK 500 6 SER A -4 94.78 -64.52 REMARK 500 6 SER A -2 48.25 -79.22 REMARK 500 6 LYS A 5 -39.42 -134.66 REMARK 500 6 PHE A 29 -72.45 -37.14 REMARK 500 6 ASN A 66 -74.32 -94.78 REMARK 500 6 PRO A 92 -170.47 -69.82 REMARK 500 7 SER A -2 165.52 -48.23 REMARK 500 7 ALA A 2 -62.30 -131.78 REMARK 500 7 THR A 4 101.08 -46.07 REMARK 500 7 PHE A 29 -74.03 -43.26 REMARK 500 7 ILE A 32 93.44 -61.65 REMARK 500 7 ALA A 50 -179.38 -171.70 REMARK 500 7 ASN A 66 -74.52 -97.69 REMARK 500 7 MET A 67 -36.84 -39.10 REMARK 500 7 GLU A 89 112.06 -172.25 REMARK 500 7 PRO A 92 -176.02 -69.85 REMARK 500 8 ALA A 2 146.46 -173.05 REMARK 500 8 LYS A 5 45.82 -106.46 REMARK 500 8 ASP A 19 -39.12 -35.80 REMARK 500 8 ASP A 31 75.99 -60.70 REMARK 500 8 ILE A 32 119.94 -36.12 REMARK 500 8 ALA A 50 -179.63 -173.56 REMARK 500 8 ASP A 65 -19.99 -49.64 REMARK 500 8 ASN A 66 -74.93 -104.49 REMARK 500 8 ASN A 68 113.56 -38.60 REMARK 500 8 LYS A 88 29.67 36.94 REMARK 500 8 SER A 93 117.25 -162.65 REMARK 500 9 MET A 1 -53.04 -134.36 REMARK 500 9 THR A 3 42.63 34.32 REMARK 500 9 ARG A 6 -36.19 -131.64 REMARK 500 9 PHE A 29 -71.09 -50.99 REMARK 500 9 ASP A 31 75.19 -117.75 REMARK 500 9 ILE A 32 120.06 -35.81 REMARK 500 9 PRO A 38 97.57 -69.78 REMARK 500 9 GLU A 44 29.09 46.29 REMARK 500 9 ALA A 50 -175.29 -170.71 REMARK 500 9 ASN A 66 -73.20 -104.12 REMARK 500 9 ASN A 68 116.21 -39.75 REMARK 500 9 ALA A 82 102.93 -46.05 REMARK 500 9 LYS A 83 152.44 -46.01 REMARK 500 10 SER A -2 171.35 -59.95 REMARK 500 10 ILE A 32 103.13 -51.78 REMARK 500 10 ARG A 47 31.35 -85.65 REMARK 500 10 ASN A 66 -74.79 -98.23 REMARK 500 10 ALA A 82 106.58 -45.11 REMARK 500 10 LYS A 83 150.13 -46.87 REMARK 500 10 GLU A 89 -61.00 -107.66 REMARK 500 11 SER A -2 173.33 -52.81 REMARK 500 11 LYS A 5 42.42 -94.32 REMARK 500 11 PHE A 29 -70.40 -36.36 REMARK 500 11 ALA A 50 -177.51 -170.59 REMARK 500 11 ASN A 66 -73.29 -98.38 REMARK 500 11 SER A 93 -55.13 -122.71 REMARK 500 12 SER A -2 88.83 -64.44 REMARK 500 12 ALA A 2 96.63 -61.28 REMARK 500 12 THR A 4 70.78 -69.78 REMARK 500 12 LYS A 5 48.77 -78.84 REMARK 500 12 ASP A 19 -38.21 -38.75 REMARK 500 12 PHE A 29 -73.52 -49.22 REMARK 500 12 ILE A 32 144.49 -38.71 REMARK 500 12 ALA A 50 -176.82 -171.20 REMARK 500 12 ASP A 65 -25.36 -39.98 REMARK 500 12 ASN A 66 -74.43 -102.54 REMARK 500 12 ASN A 68 116.27 -34.77 REMARK 500 12 ALA A 82 107.66 -46.89 REMARK 500 12 LYS A 83 152.63 -49.98 REMARK 500 12 SER A 94 107.08 -166.91 REMARK 500 13 LYS A 5 36.84 -98.71 REMARK 500 13 PHE A 29 -71.76 -52.83 REMARK 500 13 ASP A 31 78.65 -115.00 REMARK 500 13 ILE A 32 122.17 -35.88 REMARK 500 13 ASN A 66 -74.08 -109.35 REMARK 500 13 MET A 67 -32.70 -34.78 REMARK 500 13 PRO A 92 -173.56 -69.70 REMARK 500 14 SER A -5 114.69 -161.52 REMARK 500 14 ALA A 2 46.54 -79.42 REMARK 500 14 ASN A 66 -73.01 -95.40 REMARK 500 14 MET A 85 151.79 -41.41 REMARK 500 15 MET A 1 55.01 -92.56 REMARK 500 15 LYS A 5 42.83 -103.11 REMARK 500 15 ASP A 19 -38.64 -36.13 REMARK 500 15 ASN A 66 -73.25 -93.75 REMARK 500 15 ARG A 86 129.42 -32.25 REMARK 500 15 PRO A 92 -177.12 -69.80 REMARK 500 16 SER A -4 139.62 -174.65 REMARK 500 16 PHE A 29 -73.12 -38.08 REMARK 500 16 ASP A 31 79.85 -111.60 REMARK 500 16 ILE A 32 124.99 -36.93 REMARK 500 16 ASP A 40 -176.37 -53.91 REMARK 500 16 ASP A 65 -27.21 -38.25 REMARK 500 16 ASN A 66 -74.85 -101.54 REMARK 500 16 PRO A 84 -163.54 -69.76 REMARK 500 17 SER A -1 106.73 -160.97 REMARK 500 17 MET A 1 151.87 -40.98 REMARK 500 17 PHE A 29 -72.25 -43.86 REMARK 500 17 ASP A 31 73.07 -110.08 REMARK 500 17 ILE A 32 119.89 -38.24 REMARK 500 17 ASN A 66 -74.95 -96.30 REMARK 500 18 SER A -4 42.88 -93.53 REMARK 500 18 MET A 1 152.98 -41.56 REMARK 500 18 THR A 4 53.47 71.43 REMARK 500 18 LYS A 5 42.06 -81.46 REMARK 500 18 GLU A 44 42.00 39.68 REMARK 500 18 ASP A 65 -27.34 -37.94 REMARK 500 18 ASN A 66 -74.18 -96.07 REMARK 500 18 MET A 67 -32.03 -36.66 REMARK 500 18 LYS A 83 155.53 -44.85 REMARK 500 18 MET A 85 160.91 -45.05 REMARK 500 19 SER A -4 42.12 -87.44 REMARK 500 19 ASN A 66 -74.42 -93.92 REMARK 500 19 MET A 67 -39.02 -37.89 REMARK 500 19 PHE A 73 26.24 46.88 REMARK 500 19 GLU A 89 117.32 -172.29 REMARK 500 20 MET A 1 97.25 -61.93 REMARK 500 20 LEU A 13 -178.29 -55.39 REMARK 500 20 ILE A 32 120.75 -39.60 REMARK 500 20 ASN A 66 -75.19 -94.28 REMARK 500 20 SER A 90 -53.74 -122.72 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001135.1 RELATED DB: TARGETDB
DBREF 2CQB A 1 89 UNP Q9UNP9 PPIE_HUMAN 1 89
SEQADV 2CQB GLY A -6 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB SER A -5 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB SER A -4 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB GLY A -3 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB SER A -2 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB SER A -1 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB GLY A 0 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB SER A 90 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB GLY A 91 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB PRO A 92 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB SER A 93 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB SER A 94 UNP Q9UNP9 CLONING ARTIFACT SEQADV 2CQB GLY A 95 UNP Q9UNP9 CLONING ARTIFACT
SEQRES 1 A 102 GLY SER SER GLY SER SER GLY MET ALA THR THR LYS ARG SEQRES 2 A 102 VAL LEU TYR VAL GLY GLY LEU ALA GLU GLU VAL ASP ASP SEQRES 3 A 102 LYS VAL LEU HIS ALA ALA PHE ILE PRO PHE GLY ASP ILE SEQRES 4 A 102 THR ASP ILE GLN ILE PRO LEU ASP TYR GLU THR GLU LYS SEQRES 5 A 102 HIS ARG GLY PHE ALA PHE VAL GLU PHE GLU LEU ALA GLU SEQRES 6 A 102 ASP ALA ALA ALA ALA ILE ASP ASN MET ASN GLU SER GLU SEQRES 7 A 102 LEU PHE GLY ARG THR ILE ARG VAL ASN LEU ALA LYS PRO SEQRES 8 A 102 MET ARG ILE LYS GLU SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 19 ALA A 24 1 6 HELIX 2 2 GLU A 58 MET A 67 1 10
SHEET 1 A 4 LEU A 8 GLY A 11 0 SHEET 2 A 4 ILE A 35 ILE A 37 -1 SHEET 3 A 4 PHE A 49 VAL A 52 -1 SHEET 4 A 4 ARG A 78 ASN A 80 -1
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000