10 20 30 40 50 60 70 80 2CQ4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 19-MAY-05 2CQ4
TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA BINDING TITLE 2 MOTIF PROTEIN 23
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA BINDING MOTIF PROTEIN 23; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM23; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050131-08; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2CQ4 1 VERSN REVDAT 1 19-NOV-05 2CQ4 0
JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA JRNL TITL 2 BINDING MOTIF PROTEIN 23 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CQ4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024495.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.07MM 13C/15N-PROTEIN, 20MM REMARK 210 D-TRIS-HCL (PH 7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9297, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 126 143.71 -172.19 REMARK 500 1 VAL A 139 41.81 -86.06 REMARK 500 1 PRO A 144 -19.01 -45.78 REMARK 500 1 ARG A 150 43.99 -83.94 REMARK 500 1 ARG A 160 50.96 -118.39 REMARK 500 1 THR A 211 102.17 -35.52 REMARK 500 1 ARG A 214 107.98 -46.75 REMARK 500 1 PRO A 219 152.27 -49.07 REMARK 500 1 ASN A 230 -39.90 -38.74 REMARK 500 1 SER A 237 159.85 -43.14 REMARK 500 2 LEU A 142 94.17 -69.19 REMARK 500 2 PRO A 144 -19.42 -45.04 REMARK 500 2 ARG A 150 37.70 -83.35 REMARK 500 2 ASP A 165 -36.86 -38.54 REMARK 500 2 ARG A 188 -59.89 -120.93 REMARK 500 2 ARG A 189 -51.20 -129.84 REMARK 500 2 THR A 211 118.13 -36.76 REMARK 500 2 ARG A 214 104.63 -47.49 REMARK 500 2 SER A 225 42.57 -88.57 REMARK 500 3 PRO A 134 172.07 -47.23 REMARK 500 3 GLU A 137 154.73 -37.26 REMARK 500 3 PRO A 144 -19.36 -45.19 REMARK 500 3 ARG A 150 43.99 -87.70 REMARK 500 3 ARG A 160 42.01 -98.28 REMARK 500 3 ASP A 184 -59.18 -126.99 REMARK 500 3 SER A 187 -60.32 -101.98 REMARK 500 3 THR A 211 98.18 -35.79 REMARK 500 3 ARG A 214 108.71 -53.11 REMARK 500 3 GLN A 226 43.61 -85.86 REMARK 500 3 PRO A 235 42.10 -78.18 REMARK 500 4 LEU A 142 115.44 -34.74 REMARK 500 4 PRO A 144 -16.05 -48.88 REMARK 500 4 ARG A 150 46.80 -82.50 REMARK 500 4 ARG A 160 46.67 -98.57 REMARK 500 4 SER A 183 40.71 75.02 REMARK 500 4 ARG A 185 77.99 -116.57 REMARK 500 4 ASN A 186 40.01 37.81 REMARK 500 4 ARG A 188 155.20 -38.59 REMARK 500 4 LYS A 191 126.40 -35.38 REMARK 500 4 THR A 211 99.50 -38.01 REMARK 500 4 ARG A 214 109.90 -54.51 REMARK 500 4 ALA A 224 107.53 -59.09 REMARK 500 4 GLN A 226 41.00 -94.70 REMARK 500 4 ARG A 231 56.68 -92.31 REMARK 500 4 SER A 236 106.01 -59.31 REMARK 500 4 SER A 237 -55.99 -128.02 REMARK 500 5 SER A 129 52.14 34.36 REMARK 500 5 LYS A 132 45.39 34.42 REMARK 500 5 PRO A 144 -17.36 -47.40 REMARK 500 5 ARG A 150 39.57 -82.29 REMARK 500 5 ARG A 160 51.63 -109.34 REMARK 500 5 SER A 183 77.42 -106.35 REMARK 500 5 ASN A 186 -43.04 -133.32 REMARK 500 5 THR A 211 107.48 -35.41 REMARK 500 5 ARG A 214 100.17 -59.49 REMARK 500 5 ARG A 231 62.45 -108.14 REMARK 500 6 SER A 126 170.96 -53.94 REMARK 500 6 LEU A 142 131.86 -35.83 REMARK 500 6 THR A 211 104.92 -35.68 REMARK 500 6 ARG A 214 104.93 -41.47 REMARK 500 6 SER A 236 108.52 -52.01 REMARK 500 7 PRO A 134 109.24 -45.57 REMARK 500 7 PRO A 138 -168.54 -77.26 REMARK 500 7 ARG A 150 38.73 -83.97 REMARK 500 7 ALA A 158 169.19 -48.12 REMARK 500 7 ARG A 160 45.43 -99.45 REMARK 500 7 SER A 183 44.11 -99.63 REMARK 500 7 ARG A 188 44.15 -82.36 REMARK 500 7 THR A 211 120.09 -35.65 REMARK 500 7 ARG A 214 105.28 -50.01 REMARK 500 8 SER A 127 -53.65 -121.75 REMARK 500 8 PRO A 138 153.09 -47.04 REMARK 500 8 ASN A 141 179.12 -53.47 REMARK 500 8 LEU A 142 107.83 -39.18 REMARK 500 8 ARG A 150 37.20 -91.61 REMARK 500 8 THR A 211 110.20 -36.39 REMARK 500 8 ARG A 214 105.42 -50.21 REMARK 500 8 LYS A 229 -71.06 -56.72 REMARK 500 8 LEU A 232 125.15 -36.54 REMARK 500 8 SER A 236 128.33 -174.42 REMARK 500 9 ASN A 141 155.02 -40.54 REMARK 500 9 LEU A 142 136.59 -35.58 REMARK 500 9 ARG A 150 48.27 -95.95 REMARK 500 9 ARG A 185 99.31 -64.60 REMARK 500 9 SER A 187 40.75 -93.04 REMARK 500 9 THR A 211 112.11 -34.48 REMARK 500 9 ARG A 214 106.84 -49.92 REMARK 500 9 SER A 225 51.94 -98.81 REMARK 500 10 SER A 127 140.05 -173.15 REMARK 500 10 ARG A 150 48.58 -87.68 REMARK 500 10 ARG A 160 46.73 -107.39 REMARK 500 10 LEU A 210 -31.74 -37.45 REMARK 500 10 THR A 211 103.49 -34.45 REMARK 500 10 ARG A 214 109.90 -56.42 REMARK 500 10 SER A 225 36.04 -89.35 REMARK 500 10 GLN A 226 33.57 -84.35 REMARK 500 10 ARG A 231 44.29 -91.13 REMARK 500 11 LYS A 132 80.19 -67.82 REMARK 500 11 ARG A 136 53.79 -106.85 REMARK 500 11 SER A 187 155.42 -37.99 REMARK 500 11 LYS A 191 -73.68 -83.45 REMARK 500 11 THR A 211 106.42 -35.72 REMARK 500 11 ARG A 214 106.79 -49.31 REMARK 500 11 GLN A 226 48.82 -99.32 REMARK 500 12 ASN A 141 129.65 -38.23 REMARK 500 12 ARG A 160 54.34 -113.89 REMARK 500 12 ASP A 165 -36.42 -35.67 REMARK 500 12 ASN A 186 101.38 -45.44 REMARK 500 12 THR A 211 102.71 -38.07 REMARK 500 12 ARG A 214 103.15 -48.13 REMARK 500 12 GLN A 226 40.66 -94.98 REMARK 500 12 ALA A 227 -65.47 -98.00 REMARK 500 12 LEU A 232 131.20 -37.11 REMARK 500 13 SER A 129 -66.29 -95.66 REMARK 500 13 PRO A 138 163.40 -46.86 REMARK 500 13 VAL A 139 37.85 -91.36 REMARK 500 13 PRO A 144 -19.13 -46.85 REMARK 500 13 ALA A 158 175.49 -55.77 REMARK 500 13 ARG A 160 48.08 -103.43 REMARK 500 13 THR A 211 98.69 -36.93 REMARK 500 13 ARG A 214 108.14 -55.79 REMARK 500 13 PRO A 219 153.96 -49.07 REMARK 500 13 GLU A 228 -39.56 -38.45 REMARK 500 13 LYS A 229 -70.28 -61.59 REMARK 500 13 SER A 233 90.62 -68.93 REMARK 500 14 SER A 126 95.56 -68.79 REMARK 500 14 PRO A 138 173.64 -45.95 REMARK 500 14 ASN A 141 151.98 -36.96 REMARK 500 14 ARG A 150 42.50 -89.88 REMARK 500 14 THR A 211 105.59 -35.86 REMARK 500 14 ARG A 214 106.45 -57.79 REMARK 500 14 GLN A 226 76.04 -61.48 REMARK 500 14 ALA A 227 -50.77 -125.28 REMARK 500 15 LEU A 142 128.04 -36.57 REMARK 500 15 SER A 190 177.53 -54.54 REMARK 500 15 THR A 211 103.08 -35.61 REMARK 500 15 GLN A 226 35.40 -86.03 REMARK 500 16 PRO A 138 150.14 -45.73 REMARK 500 16 LEU A 142 177.47 -54.05 REMARK 500 16 PRO A 144 -18.81 -45.97 REMARK 500 16 ARG A 150 38.48 -83.67 REMARK 500 16 ALA A 158 177.52 -55.26 REMARK 500 16 ARG A 160 39.97 -97.81 REMARK 500 16 ARG A 185 136.67 -39.91 REMARK 500 16 SER A 187 -54.17 -127.36 REMARK 500 16 LYS A 191 108.86 -175.00 REMARK 500 16 THR A 211 114.00 -38.34 REMARK 500 16 ASN A 230 -39.97 -34.39 REMARK 500 16 ARG A 231 75.80 -104.30 REMARK 500 16 LEU A 232 116.60 -162.59 REMARK 500 17 ARG A 150 34.94 -90.19 REMARK 500 17 ARG A 189 99.91 -35.41 REMARK 500 17 THR A 211 116.25 -36.74 REMARK 500 17 ARG A 214 109.52 -48.81 REMARK 500 17 PRO A 219 153.73 -49.10 REMARK 500 17 SER A 237 116.57 -39.80 REMARK 500 18 SER A 130 141.40 -171.92 REMARK 500 18 LYS A 132 133.99 -172.09 REMARK 500 18 SER A 133 108.77 -54.38 REMARK 500 18 PRO A 134 163.22 -44.64 REMARK 500 18 GLU A 137 141.84 -36.01 REMARK 500 18 ASN A 141 111.41 -36.83 REMARK 500 18 ARG A 150 42.96 -83.04 REMARK 500 18 ALA A 158 -175.59 -52.89 REMARK 500 18 ARG A 188 133.19 -34.46 REMARK 500 18 THR A 211 107.20 -36.85 REMARK 500 18 ARG A 214 108.34 -56.50 REMARK 500 18 GLN A 226 44.41 -91.30 REMARK 500 18 ARG A 231 77.94 -106.83 REMARK 500 18 PRO A 235 38.46 -78.24 REMARK 500 19 LEU A 142 178.88 -49.16 REMARK 500 19 ARG A 150 33.43 -85.92 REMARK 500 19 SER A 187 41.95 -100.84 REMARK 500 19 ARG A 189 43.18 -80.50 REMARK 500 19 THR A 211 101.83 -36.75 REMARK 500 19 ARG A 214 106.46 -45.90 REMARK 500 19 GLN A 226 40.44 -104.43 REMARK 500 19 ARG A 231 34.96 -89.97 REMARK 500 20 PRO A 134 39.83 -77.70 REMARK 500 20 ARG A 150 39.83 -86.73 REMARK 500 20 ARG A 160 43.67 -108.29 REMARK 500 20 THR A 211 123.59 -33.97 REMARK 500 20 ARG A 214 99.82 -51.49 REMARK 500 20 ALA A 224 153.45 -43.33 REMARK 500 20 GLN A 226 44.10 -105.41 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012635.1 RELATED DB: TARGETDB
DBREF 2CQ4 A 132 232 UNP Q86U06 RBM23_HUMAN 132 232
SEQADV 2CQ4 GLY A 125 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 126 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 127 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 GLY A 128 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 129 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 130 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 GLY A 131 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 233 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 GLY A 234 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 PRO A 235 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 236 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 237 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 GLY A 238 UNP Q86U06 CLONING ARTIFACT
SEQRES 1 A 114 GLY SER SER GLY SER SER GLY LYS SER PRO VAL ARG GLU SEQRES 2 A 114 PRO VAL ASP ASN LEU SER PRO GLU GLU ARG ASP ALA ARG SEQRES 3 A 114 THR VAL PHE CYS MET GLN LEU ALA ALA ARG ILE ARG PRO SEQRES 4 A 114 ARG ASP LEU GLU ASP PHE PHE SER ALA VAL GLY LYS VAL SEQRES 5 A 114 ARG ASP VAL ARG ILE ILE SER ASP ARG ASN SER ARG ARG SEQRES 6 A 114 SER LYS GLY ILE ALA TYR VAL GLU PHE CYS GLU ILE GLN SEQRES 7 A 114 SER VAL PRO LEU ALA ILE GLY LEU THR GLY GLN ARG LEU SEQRES 8 A 114 LEU GLY VAL PRO ILE ILE VAL GLN ALA SER GLN ALA GLU SEQRES 9 A 114 LYS ASN ARG LEU SER GLY PRO SER SER GLY
HELIX 1 1 GLU A 145 ARG A 150 1 6 HELIX 2 2 ARG A 162 SER A 171 1 10 HELIX 3 3 GLU A 200 GLN A 202 5 3 HELIX 4 4 SER A 203 THR A 211 1 9 HELIX 5 5 SER A 225 SER A 233 1 9
SHEET 1 A 5 VAL A 176 ILE A 181 0 SHEET 2 A 5 ALA A 194 PHE A 198 -1 O TYR A 195 N ARG A 180 SHEET 3 A 5 THR A 151 MET A 155 -1 N CYS A 154 O ALA A 194 SHEET 4 A 5 VAL A 218 ALA A 224 -1 O ILE A 221 N MET A 155 SHEET 5 A 5 GLN A 213 LEU A 215 -1 N LEU A 215 O VAL A 218
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000