10 20 30 40 50 60 70 80 2CPI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION 19-MAY-05 2CPI
TITLE SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF CNOT4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: E3 UBIQUITIN PROTEIN LIGASE CNOT4, CCR4- COMPND 6 ASSOCIATED FACTOR 4, POTENTIAL TRANSCRIPTIONAL REPRESSOR COMPND 7 NOT4HP; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CNOT4; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040727-12; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, RRM, RNP, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, GENE REGULATION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2CPI 1 VERSN REVDAT 1 19-NOV-05 2CPI 0
JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF JRNL TITL 2 CNOT4 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CPI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024480.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75MM 13C/15N-PROTEIN; 20MM REMARK 210 D-TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801/20031121, NMRVIEW REMARK 210 5.0.4, KUJIRA 0.925, CYANA REMARK 210 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 96 92.48 -67.28 REMARK 500 1 ASN A 109 44.94 -85.32 REMARK 500 1 GLN A 118 -32.33 -38.38 REMARK 500 1 ALA A 121 83.79 -64.46 REMARK 500 1 TYR A 131 -74.98 -103.17 REMARK 500 1 SER A 199 122.37 -38.63 REMARK 500 1 SER A 203 40.16 37.20 REMARK 500 2 ALA A 121 85.29 -62.54 REMARK 500 2 ARG A 128 144.45 -36.39 REMARK 500 2 TYR A 131 -74.18 -127.54 REMARK 500 2 CYS A 196 137.97 -174.27 REMARK 500 2 SER A 197 152.46 -43.40 REMARK 500 2 SER A 202 107.86 -35.16 REMARK 500 3 ASN A 109 42.31 -88.25 REMARK 500 3 GLN A 118 -32.46 -34.93 REMARK 500 3 ALA A 121 87.17 -61.68 REMARK 500 3 ARG A 128 143.93 -39.75 REMARK 500 3 TYR A 131 -74.67 -87.35 REMARK 500 3 GLN A 153 38.37 -83.04 REMARK 500 3 ASP A 182 29.05 44.96 REMARK 500 3 TYR A 195 88.88 -62.97 REMARK 500 3 SER A 199 -66.40 -107.03 REMARK 500 4 GLN A 107 42.14 34.43 REMARK 500 4 TYR A 131 -73.84 -131.32 REMARK 500 4 TYR A 198 141.05 -173.69 REMARK 500 5 SER A 98 178.37 -51.65 REMARK 500 5 ASN A 109 40.02 -89.51 REMARK 500 5 GLN A 118 -34.82 -39.85 REMARK 500 5 PRO A 129 0.01 -69.79 REMARK 500 5 TYR A 131 -72.88 -111.96 REMARK 500 5 ASN A 178 35.21 71.81 REMARK 500 5 TYR A 195 135.31 -171.65 REMARK 500 5 SER A 199 140.05 -173.95 REMARK 500 6 GLN A 107 46.80 -87.30 REMARK 500 6 LYS A 108 44.88 -101.24 REMARK 500 6 ASN A 109 50.55 -110.41 REMARK 500 6 TYR A 131 -69.55 -103.34 REMARK 500 6 ASN A 178 47.01 70.76 REMARK 500 7 ALA A 121 83.05 -66.36 REMARK 500 7 TYR A 131 -74.26 -126.08 REMARK 500 7 ALA A 150 42.21 -83.15 REMARK 500 7 ALA A 172 -36.42 -38.75 REMARK 500 7 TYR A 195 93.59 -63.90 REMARK 500 8 ASN A 109 45.79 -86.69 REMARK 500 8 TYR A 131 -74.91 -87.64 REMARK 500 8 THR A 147 40.45 -82.94 REMARK 500 8 SER A 197 98.38 -65.76 REMARK 500 9 SER A 98 -60.34 -105.72 REMARK 500 9 ASN A 109 49.58 -86.24 REMARK 500 9 ALA A 121 82.99 -65.46 REMARK 500 9 ARG A 128 143.28 -35.61 REMARK 500 9 TYR A 131 -74.15 -117.06 REMARK 500 9 ALA A 150 41.22 -84.44 REMARK 500 9 PRO A 155 -173.56 -69.75 REMARK 500 9 LYS A 194 -72.18 -111.57 REMARK 500 9 SER A 202 75.76 -106.39 REMARK 500 10 SER A 95 112.65 -160.78 REMARK 500 10 GLN A 107 120.88 -173.82 REMARK 500 10 LYS A 108 41.35 -91.85 REMARK 500 10 TYR A 131 -74.93 -121.00 REMARK 500 10 ASN A 178 52.08 74.41 REMARK 500 10 TYR A 195 98.73 -50.19 REMARK 500 11 ALA A 101 166.26 -49.89 REMARK 500 11 PRO A 129 1.89 -69.81 REMARK 500 11 TYR A 131 -71.17 -109.41 REMARK 500 11 SER A 146 170.62 -55.82 REMARK 500 12 ASN A 109 42.62 -102.66 REMARK 500 12 GLN A 118 -32.06 -35.54 REMARK 500 12 ALA A 121 86.79 -66.09 REMARK 500 12 ARG A 128 143.87 -39.94 REMARK 500 12 PRO A 129 2.94 -69.80 REMARK 500 12 TYR A 131 -75.05 -86.01 REMARK 500 12 LYS A 194 42.48 -84.19 REMARK 500 12 TYR A 195 43.45 35.66 REMARK 500 13 LYS A 108 47.69 -76.70 REMARK 500 13 ASN A 109 -37.11 -130.48 REMARK 500 13 GLN A 118 -37.71 -39.26 REMARK 500 13 ALA A 121 82.99 -66.24 REMARK 500 13 TYR A 131 -75.15 -88.76 REMARK 500 13 PRO A 155 99.93 -69.73 REMARK 500 13 ALA A 172 -35.81 -37.67 REMARK 500 13 ASN A 178 45.91 70.25 REMARK 500 13 CYS A 196 130.51 -170.10 REMARK 500 13 TYR A 198 92.76 -64.75 REMARK 500 14 SER A 98 -59.30 -129.34 REMARK 500 14 LYS A 108 59.91 -97.68 REMARK 500 14 TYR A 131 -72.06 -102.53 REMARK 500 14 CYS A 196 130.19 -37.05 REMARK 500 15 GLN A 107 138.23 -37.15 REMARK 500 15 LYS A 108 48.83 -97.96 REMARK 500 15 ARG A 128 144.60 -38.58 REMARK 500 15 PRO A 129 0.50 -69.73 REMARK 500 15 TYR A 131 -74.93 -111.47 REMARK 500 16 SER A 95 115.78 -169.84 REMARK 500 16 SER A 99 -39.66 -38.75 REMARK 500 16 SER A 102 39.78 34.46 REMARK 500 16 ASN A 109 39.38 -93.12 REMARK 500 16 ALA A 121 83.37 -68.50 REMARK 500 16 ARG A 128 143.29 -38.24 REMARK 500 16 PRO A 129 1.53 -69.80 REMARK 500 16 TYR A 131 -68.27 -90.54 REMARK 500 17 SER A 95 107.72 -38.15 REMARK 500 17 GLN A 107 78.10 -115.68 REMARK 500 17 ASN A 109 38.55 -86.81 REMARK 500 17 GLN A 118 -33.02 -35.02 REMARK 500 17 ALA A 121 83.48 -60.14 REMARK 500 17 PRO A 129 1.35 -69.74 REMARK 500 17 TYR A 131 -75.14 -72.77 REMARK 500 17 PRO A 155 81.35 -69.79 REMARK 500 17 TYR A 195 53.39 35.00 REMARK 500 17 SER A 203 96.43 -58.61 REMARK 500 18 VAL A 103 99.04 -65.40 REMARK 500 18 LYS A 108 42.72 -89.36 REMARK 500 18 ALA A 121 88.12 -60.91 REMARK 500 18 TYR A 131 -74.23 -80.21 REMARK 500 18 THR A 147 -56.35 -128.81 REMARK 500 19 SER A 99 42.20 37.35 REMARK 500 19 ASN A 109 51.70 -101.17 REMARK 500 19 PRO A 129 0.80 -69.79 REMARK 500 19 TYR A 131 -75.02 -75.91 REMARK 500 19 SER A 199 -59.42 -127.46 REMARK 500 19 SER A 203 45.39 38.42 REMARK 500 20 SER A 102 149.52 -174.26 REMARK 500 20 LYS A 108 35.11 -96.76 REMARK 500 20 PRO A 129 1.23 -69.73 REMARK 500 20 TYR A 131 -75.11 -77.46 REMARK 500 20 THR A 147 44.50 -81.50 REMARK 500 20 ASN A 178 52.03 70.62 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008001487.1 RELATED DB: TARGETDB
DBREF 2CPI A 101 198 UNP Q8BT14 CNOT4_MOUSE 101 198
SEQADV 2CPI GLY A 94 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI SER A 95 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI SER A 96 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI GLY A 97 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI SER A 98 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI SER A 99 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI GLY A 100 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI SER A 199 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI GLY A 200 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI PRO A 201 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI SER A 202 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI SER A 203 UNP Q8BT14 CLONING ARTIFACT SEQADV 2CPI GLY A 204 UNP Q8BT14 CLONING ARTIFACT
SEQRES 1 A 111 GLY SER SER GLY SER SER GLY ALA SER VAL ARG VAL VAL SEQRES 2 A 111 GLN LYS ASN LEU VAL PHE VAL VAL GLY LEU SER GLN ARG SEQRES 3 A 111 LEU ALA ASP PRO GLU VAL LEU LYS ARG PRO GLU TYR PHE SEQRES 4 A 111 GLY LYS PHE GLY LYS ILE HIS LYS VAL VAL ILE ASN ASN SEQRES 5 A 111 SER THR SER TYR ALA GLY SER GLN GLY PRO SER ALA SER SEQRES 6 A 111 ALA TYR VAL THR TYR ILE ARG SER GLU ASP ALA LEU ARG SEQRES 7 A 111 ALA ILE GLN CYS VAL ASN ASN VAL VAL VAL ASP GLY ARG SEQRES 8 A 111 THR LEU LYS ALA SER LEU GLY THR THR LYS TYR CYS SER SEQRES 9 A 111 TYR SER GLY PRO SER SER GLY
HELIX 1 1 PRO A 123 LYS A 127 1 5 HELIX 2 2 SER A 166 VAL A 176 1 11
SHEET 1 A 5 ILE A 138 ASN A 144 0 SHEET 2 A 5 ALA A 157 TYR A 163 -1 SHEET 3 A 5 VAL A 111 VAL A 114 -1 SHEET 4 A 5 ARG A 184 LEU A 186 -1 SHEET 5 A 5 LYS A 187 SER A 189 1 SHEET 6 A 5 VAL A 179 VAL A 181 -1
CISPEP 1 GLY A 200 PRO A 201 1 0.05 CISPEP 2 GLY A 200 PRO A 201 2 0.10 CISPEP 3 GLY A 200 PRO A 201 3 0.11 CISPEP 4 GLY A 200 PRO A 201 4 0.01 CISPEP 5 GLY A 200 PRO A 201 5 0.06 CISPEP 6 GLY A 200 PRO A 201 6 0.01 CISPEP 7 GLY A 200 PRO A 201 7 0.12 CISPEP 8 GLY A 200 PRO A 201 8 0.04 CISPEP 9 GLY A 200 PRO A 201 9 -0.01 CISPEP 10 GLY A 200 PRO A 201 10 0.07 CISPEP 11 GLY A 200 PRO A 201 11 0.05 CISPEP 12 GLY A 200 PRO A 201 12 0.01 CISPEP 13 GLY A 200 PRO A 201 13 -0.02 CISPEP 14 GLY A 200 PRO A 201 14 0.09 CISPEP 15 GLY A 200 PRO A 201 15 0.07 CISPEP 16 GLY A 200 PRO A 201 16 0.12 CISPEP 17 GLY A 200 PRO A 201 17 0.09 CISPEP 18 GLY A 200 PRO A 201 18 0.03 CISPEP 19 GLY A 200 PRO A 201 19 0.02 CISPEP 20 GLY A 200 PRO A 201 20 0.11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000