10 20 30 40 50 60 70 80 2CPF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-MAY-05 2CPF
TITLE SOLUTION STRUCTURE OF THE PENULTIMATE RNA RECOGNITION MOTIF TITLE 2 OF HYPOTHETICAL RNA-BINDING PROTEIN RBM19
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA BINDING MOTIF PROTEIN 19; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RBM19; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040705-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, RRM, RNP, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2CPF 1 VERSN REVDAT 1 19-NOV-05 2CPF 0
JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PENULTIMATE RNA JRNL TITL 2 RECOGNITION MOTIF OF HYPOTHETICAL RNA-BINDING JRNL TITL 3 PROTEIN RBM19 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CPF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024478.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.28MM 13C/15N-PROTEIN; 20MM REMARK 210 D-TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801/20031121, NMRVIEW REMARK 210 5.0.4, KUJIRA 0.925, CYANA REMARK 210 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 356 112.24 -165.22 REMARK 500 1 SER A 392 91.61 -60.78 REMARK 500 1 SER A 439 154.54 -41.23 REMARK 500 1 GLU A 440 30.28 71.04 REMARK 500 1 SER A 450 -53.08 -128.53 REMARK 500 2 ASN A 366 32.53 72.49 REMARK 500 2 GLN A 423 -39.16 -39.94 REMARK 500 2 THR A 428 97.37 -69.66 REMARK 500 2 ALA A 442 170.43 -59.83 REMARK 500 2 THR A 443 99.98 -68.99 REMARK 500 2 ALA A 446 52.91 37.48 REMARK 500 2 PRO A 449 0.69 -69.75 REMARK 500 4 LEU A 421 -70.18 -53.76 REMARK 500 4 ALA A 446 83.19 -54.29 REMARK 500 4 SER A 450 46.90 34.39 REMARK 500 5 ASN A 366 37.03 72.73 REMARK 500 5 PRO A 445 0.96 -69.81 REMARK 500 5 SER A 447 170.33 -46.70 REMARK 500 5 PRO A 449 0.98 -69.70 REMARK 500 6 SER A 356 101.60 -59.02 REMARK 500 6 LEU A 421 -70.19 -51.52 REMARK 500 6 GLU A 440 37.59 -98.80 REMARK 500 6 ALA A 446 100.02 -39.41 REMARK 500 6 SER A 447 115.65 -174.98 REMARK 500 6 SER A 450 100.68 -48.18 REMARK 500 7 SER A 392 107.62 -58.30 REMARK 500 7 GLN A 423 -39.51 -38.59 REMARK 500 8 ASN A 366 44.93 74.72 REMARK 500 8 GLN A 425 142.28 -38.61 REMARK 500 8 ALA A 446 38.77 73.78 REMARK 500 8 PRO A 449 85.83 -69.71 REMARK 500 9 ASN A 366 34.46 70.33 REMARK 500 9 PRO A 445 95.60 -69.75 REMARK 500 9 SER A 447 164.11 -42.99 REMARK 500 10 SER A 356 37.65 36.86 REMARK 500 10 ASN A 366 40.61 71.18 REMARK 500 10 GLN A 416 -38.14 -37.91 REMARK 500 10 GLN A 423 -36.27 -38.62 REMARK 500 10 GLN A 425 150.64 -43.60 REMARK 500 10 THR A 443 164.14 -45.53 REMARK 500 10 PRO A 449 2.80 -69.76 REMARK 500 11 SER A 392 99.62 -57.55 REMARK 500 11 ALA A 442 161.04 -42.39 REMARK 500 11 SER A 450 167.17 -48.49 REMARK 500 12 PHE A 369 -38.13 -39.27 REMARK 500 12 SER A 388 117.66 -162.48 REMARK 500 12 SER A 392 89.44 -58.35 REMARK 500 12 PRO A 445 97.81 -69.73 REMARK 500 12 SER A 451 102.46 -42.32 REMARK 500 13 ASN A 366 30.26 71.19 REMARK 500 13 SER A 392 92.93 -69.86 REMARK 500 13 SER A 439 169.75 -46.26 REMARK 500 13 ALA A 446 132.73 -34.00 REMARK 500 13 SER A 447 110.99 -169.57 REMARK 500 14 ASN A 366 35.91 72.35 REMARK 500 14 SER A 392 91.64 -60.01 REMARK 500 14 PRO A 445 87.19 -69.81 REMARK 500 14 ALA A 446 117.59 -173.19 REMARK 500 15 ASN A 366 36.50 74.72 REMARK 500 15 SER A 388 118.26 -164.70 REMARK 500 15 SER A 392 91.28 -64.87 REMARK 500 15 GLN A 423 -35.82 -39.87 REMARK 500 15 SER A 439 -39.25 -39.62 REMARK 500 15 PRO A 445 97.53 -69.79 REMARK 500 16 SER A 357 144.92 -174.69 REMARK 500 16 GLN A 425 152.00 -42.65 REMARK 500 16 ALA A 442 -54.34 -120.68 REMARK 500 16 SER A 447 111.73 -36.88 REMARK 500 17 GLU A 374 -70.23 -36.78 REMARK 500 17 SER A 450 41.85 34.41 REMARK 500 18 ASN A 366 40.50 72.61 REMARK 500 18 SER A 388 118.09 -160.52 REMARK 500 18 SER A 392 85.32 -64.71 REMARK 500 18 PRO A 445 2.87 -69.77 REMARK 500 18 ALA A 446 141.00 -34.95 REMARK 500 19 SER A 388 117.95 -169.73 REMARK 500 19 SER A 392 102.46 -56.04 REMARK 500 19 GLN A 423 -34.75 -38.27 REMARK 500 19 SER A 439 47.28 -86.50 REMARK 500 20 ASN A 366 45.59 70.13 REMARK 500 20 SER A 388 116.82 -165.66 REMARK 500 20 SER A 392 94.10 -58.43 REMARK 500 20 ILE A 438 95.35 -68.68 REMARK 500 20 SER A 439 46.85 -79.19 REMARK 500 20 PRO A 449 0.18 -69.76 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011210.12 RELATED DB: TARGETDB
DBREF 2CPF A 362 446 UNP Q8R3C6 RBM19_MOUSE 724 808
SEQADV 2CPF GLY A 355 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF SER A 356 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF SER A 357 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF GLY A 358 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF SER A 359 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF SER A 360 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF GLY A 361 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF SER A 447 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF GLY A 448 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF PRO A 449 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF SER A 450 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF SER A 451 UNP Q8R3C6 CLONING ARTIFACT SEQADV 2CPF GLY A 452 UNP Q8R3C6 CLONING ARTIFACT
SEQRES 1 A 98 GLY SER SER GLY SER SER GLY LEU PHE ILE LYS ASN LEU SEQRES 2 A 98 ASN PHE SER THR THR GLU GLU THR LEU LYS GLY VAL PHE SEQRES 3 A 98 SER LYS VAL GLY ALA ILE LYS SER CYS THR ILE SER LYS SEQRES 4 A 98 LYS LYS ASN LYS ALA GLY VAL LEU LEU SER MET GLY PHE SEQRES 5 A 98 GLY PHE VAL GLU TYR LYS LYS PRO GLU GLN ALA GLN LYS SEQRES 6 A 98 ALA LEU LYS GLN LEU GLN GLY HIS THR VAL ASP GLY HIS SEQRES 7 A 98 LYS LEU GLU VAL ARG ILE SER GLU ARG ALA THR LYS PRO SEQRES 8 A 98 ALA SER GLY PRO SER SER GLY
HELIX 1 1 GLU A 373 PHE A 380 1 8 HELIX 2 2 PRO A 414 ALA A 420 1 7
SHEET 1 A 4 ILE A 386 SER A 392 0 SHEET 2 A 4 PHE A 406 TYR A 411 -1 SHEET 3 A 4 LEU A 362 LYS A 365 -1 SHEET 4 A 4 GLU A 435 ARG A 437 -1 SHEET 1 B 2 THR A 428 VAL A 429 0 SHEET 2 B 2 HIS A 432 LYS A 433 -1
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000