10 20 30 40 50 60 70 80 2CPE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ONCOPROTEIN 19-MAY-05 2CPE
TITLE SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF EWING TITLE 2 SARCOMA(EWS) PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN EWS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: EWS ONCOGENE, EWING SARCOMA BREAKPOINT REGION 1 COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EWSR1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040329-86; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, RRM, RNP, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, ONCOPROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2CPE 1 VERSN REVDAT 1 19-NOV-05 2CPE 0
JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF JRNL TITL 2 EWING SARCOMA(EWS) PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CPE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024477.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.07MM 13C/15N-PROTEIN; 20MM REMARK 210 D-TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801/20031121, NMRVIEW REMARK 210 5.0.4, KUJIRA 0.925, CYANA REMARK 210 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 357 44.70 -99.82 REMARK 500 1 ASP A 359 -37.75 -37.30 REMARK 500 1 LYS A 388 107.23 -45.85 REMARK 500 1 MET A 397 40.76 -81.61 REMARK 500 1 PRO A 409 94.69 -69.75 REMARK 500 1 ASP A 431 100.28 -57.12 REMARK 500 1 LEU A 444 109.80 -43.76 REMARK 500 1 PRO A 450 -173.93 -69.75 REMARK 500 2 SER A 350 -61.19 -101.24 REMARK 500 2 SER A 361 40.03 -106.28 REMARK 500 2 LYS A 388 108.74 -47.55 REMARK 500 2 MET A 397 40.11 -82.19 REMARK 500 2 PRO A 409 95.17 -69.74 REMARK 500 2 ASP A 431 96.43 -54.66 REMARK 500 2 LEU A 444 102.15 -38.58 REMARK 500 2 SER A 456 133.89 -37.38 REMARK 500 3 PRO A 354 79.68 -69.76 REMARK 500 3 GLU A 356 172.40 -56.19 REMARK 500 3 LYS A 388 108.32 -50.31 REMARK 500 3 MET A 397 40.32 -82.12 REMARK 500 3 PRO A 409 94.99 -69.74 REMARK 500 3 ASP A 431 93.47 -60.40 REMARK 500 3 LYS A 448 152.63 -48.09 REMARK 500 3 PRO A 455 2.80 -69.78 REMARK 500 4 LYS A 388 105.05 -46.72 REMARK 500 4 MET A 397 40.68 -81.74 REMARK 500 4 PRO A 409 95.29 -69.73 REMARK 500 4 ASP A 431 99.93 -54.74 REMARK 500 4 LEU A 444 118.72 -36.99 REMARK 500 4 ALA A 445 96.40 -57.29 REMARK 500 4 PRO A 455 2.78 -69.87 REMARK 500 5 PRO A 354 0.22 -69.80 REMARK 500 5 SER A 358 42.82 -100.75 REMARK 500 5 ASP A 359 97.58 -45.28 REMARK 500 5 SER A 361 30.45 -89.56 REMARK 500 5 LYS A 388 108.14 -54.41 REMARK 500 5 MET A 397 41.80 -81.17 REMARK 500 5 PRO A 409 91.36 -69.82 REMARK 500 5 ASP A 431 96.12 -58.64 REMARK 500 5 LYS A 433 165.94 -49.70 REMARK 500 5 LEU A 444 136.18 -37.96 REMARK 500 5 ASN A 452 137.04 -174.46 REMARK 500 6 PRO A 354 -175.02 -69.76 REMARK 500 6 LYS A 388 106.87 -57.18 REMARK 500 6 ASN A 390 150.21 -46.79 REMARK 500 6 MET A 397 40.83 -81.79 REMARK 500 6 PRO A 409 94.00 -69.80 REMARK 500 6 ASP A 431 94.68 -54.16 REMARK 500 6 ALA A 445 98.50 -59.57 REMARK 500 6 SER A 453 35.15 38.39 REMARK 500 6 PRO A 455 89.80 -69.75 REMARK 500 6 SER A 457 96.07 -60.45 REMARK 500 7 ASP A 355 79.05 -69.05 REMARK 500 7 SER A 358 44.15 -101.08 REMARK 500 7 SER A 361 37.06 -90.88 REMARK 500 7 LYS A 388 109.28 -54.95 REMARK 500 7 MET A 397 41.23 -81.36 REMARK 500 7 PRO A 409 89.08 -69.68 REMARK 500 7 ASP A 431 97.87 -52.62 REMARK 500 7 LEU A 444 112.63 -38.87 REMARK 500 7 LYS A 447 135.17 -173.30 REMARK 500 7 SER A 453 116.15 -163.90 REMARK 500 7 PRO A 455 -178.43 -69.80 REMARK 500 8 ASP A 355 118.74 -36.24 REMARK 500 8 CYS A 384 -70.13 -57.34 REMARK 500 8 LYS A 388 107.16 -51.05 REMARK 500 8 MET A 397 41.08 -81.37 REMARK 500 8 PRO A 409 93.06 -69.72 REMARK 500 8 ASP A 431 92.32 -59.51 REMARK 500 8 LYS A 433 166.49 -45.68 REMARK 500 8 LEU A 444 130.13 -39.76 REMARK 500 9 SER A 348 -53.67 -130.98 REMARK 500 9 ASP A 355 43.40 -87.79 REMARK 500 9 LYS A 388 108.96 -53.18 REMARK 500 9 MET A 397 40.69 -81.49 REMARK 500 9 PRO A 409 95.79 -69.76 REMARK 500 9 ASP A 431 98.38 -61.40 REMARK 500 9 ALA A 445 104.28 -50.13 REMARK 500 9 MET A 451 150.54 -39.10 REMARK 500 9 SER A 453 85.68 -64.68 REMARK 500 9 PRO A 455 2.68 -69.77 REMARK 500 9 SER A 456 134.44 -34.76 REMARK 500 9 SER A 457 155.00 -40.43 REMARK 500 10 GLU A 356 39.94 -89.12 REMARK 500 10 SER A 358 -54.13 -134.34 REMARK 500 10 ASP A 359 46.07 -92.25 REMARK 500 10 SER A 361 42.39 -93.63 REMARK 500 10 LYS A 388 104.51 -55.09 REMARK 500 10 ASN A 390 150.38 -46.82 REMARK 500 10 MET A 397 40.58 -81.84 REMARK 500 10 PRO A 409 92.57 -69.76 REMARK 500 10 ASP A 431 98.70 -55.81 REMARK 500 10 LEU A 444 106.14 -38.74 REMARK 500 10 ALA A 445 100.52 -37.33 REMARK 500 10 LYS A 447 150.72 -48.34 REMARK 500 10 PRO A 450 2.59 -69.75 REMARK 500 10 MET A 451 89.99 -46.12 REMARK 500 11 SER A 348 -35.41 -39.21 REMARK 500 11 SER A 350 42.09 38.27 REMARK 500 11 PRO A 354 -175.61 -69.80 REMARK 500 11 LYS A 388 105.77 -50.03 REMARK 500 11 MET A 397 41.21 -81.33 REMARK 500 11 PRO A 409 95.64 -69.76 REMARK 500 11 ASP A 431 97.04 -59.90 REMARK 500 11 LEU A 444 128.22 -35.05 REMARK 500 11 MET A 451 163.52 -42.51 REMARK 500 11 SER A 457 83.63 -67.84 REMARK 500 12 SER A 350 43.46 -101.53 REMARK 500 12 PRO A 354 2.24 -69.77 REMARK 500 12 SER A 361 39.46 -86.93 REMARK 500 12 LYS A 388 107.76 -54.54 REMARK 500 12 MET A 397 41.01 -81.27 REMARK 500 12 PRO A 409 91.89 -69.76 REMARK 500 12 ASP A 431 96.27 -51.65 REMARK 500 12 ALA A 445 170.60 -48.65 REMARK 500 12 PRO A 450 -172.52 -69.66 REMARK 500 12 ASN A 452 39.89 -82.30 REMARK 500 12 PRO A 455 2.11 -69.84 REMARK 500 12 SER A 456 50.63 73.35 REMARK 500 13 SER A 347 42.88 -104.13 REMARK 500 13 ASP A 353 79.47 -109.12 REMARK 500 13 PRO A 354 2.64 -69.75 REMARK 500 13 ASP A 355 48.57 73.95 REMARK 500 13 ASP A 357 48.67 -100.79 REMARK 500 13 LYS A 388 103.84 -46.09 REMARK 500 13 MET A 397 40.26 -82.10 REMARK 500 13 PRO A 409 92.42 -69.76 REMARK 500 13 ASP A 431 89.54 -54.15 REMARK 500 13 ALA A 445 109.38 -57.41 REMARK 500 13 SER A 457 103.11 -56.81 REMARK 500 14 SER A 347 123.06 -36.40 REMARK 500 14 PRO A 354 1.16 -69.66 REMARK 500 14 GLU A 356 108.58 -50.90 REMARK 500 14 LYS A 388 105.82 -52.42 REMARK 500 14 MET A 397 41.15 -81.37 REMARK 500 14 PRO A 409 94.51 -69.69 REMARK 500 14 ASP A 431 93.74 -58.49 REMARK 500 14 LEU A 444 123.75 -35.03 REMARK 500 14 PRO A 450 -170.44 -69.77 REMARK 500 14 ASN A 452 98.91 -57.21 REMARK 500 15 GLU A 356 158.51 -48.35 REMARK 500 15 ASN A 360 99.14 -51.86 REMARK 500 15 SER A 361 42.73 -93.95 REMARK 500 15 MET A 397 41.08 -81.36 REMARK 500 15 PRO A 409 91.30 -69.75 REMARK 500 15 ASP A 431 99.02 -58.15 REMARK 500 16 ASP A 359 102.08 -38.81 REMARK 500 16 SER A 361 38.45 -89.00 REMARK 500 16 MET A 397 38.09 -82.69 REMARK 500 16 PRO A 409 90.95 -69.76 REMARK 500 16 ASP A 431 95.08 -61.51 REMARK 500 16 LYS A 433 176.32 -47.88 REMARK 500 16 PRO A 450 2.94 -69.79 REMARK 500 17 SER A 361 37.68 -90.20 REMARK 500 17 MET A 397 41.47 -81.17 REMARK 500 17 PRO A 409 89.38 -69.73 REMARK 500 17 ASP A 431 97.51 -52.93 REMARK 500 17 MET A 451 99.75 -47.51 REMARK 500 18 SER A 347 -59.25 -126.20 REMARK 500 18 LYS A 388 105.28 -51.04 REMARK 500 18 MET A 397 41.13 -81.52 REMARK 500 18 PRO A 409 94.82 -69.71 REMARK 500 18 ASP A 431 94.71 -49.70 REMARK 500 18 LEU A 444 105.33 -48.84 REMARK 500 18 MET A 451 105.84 -170.22 REMARK 500 19 SER A 347 -65.03 -121.02 REMARK 500 19 LYS A 388 107.43 -49.22 REMARK 500 19 MET A 397 40.96 -81.52 REMARK 500 19 PRO A 409 89.47 -69.78 REMARK 500 19 ASP A 431 95.49 -60.23 REMARK 500 19 PRO A 455 80.75 -69.84 REMARK 500 20 SER A 347 -57.90 -122.66 REMARK 500 20 PRO A 354 -170.03 -69.88 REMARK 500 20 ASP A 355 41.66 -97.48 REMARK 500 20 ASP A 357 40.70 35.51 REMARK 500 20 LYS A 388 106.85 -56.62 REMARK 500 20 MET A 397 41.26 -81.25 REMARK 500 20 PRO A 409 91.37 -69.78 REMARK 500 20 ASP A 431 93.04 -55.74 REMARK 500 20 LEU A 444 133.86 -39.15 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000442 RELATED DB: TARGETDB
DBREF 2CPE A 353 453 UNP Q01844 EWS_HUMAN 353 453
SEQADV 2CPE GLY A 346 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE SER A 347 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE SER A 348 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE GLY A 349 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE SER A 350 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE SER A 351 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE GLY A 352 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE GLY A 454 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE PRO A 455 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE SER A 456 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE SER A 457 UNP Q01844 CLONING ARTIFACT SEQADV 2CPE GLY A 458 UNP Q01844 CLONING ARTIFACT
SEQRES 1 A 113 GLY SER SER GLY SER SER GLY ASP PRO ASP GLU ASP SER SEQRES 2 A 113 ASP ASN SER ALA ILE TYR VAL GLN GLY LEU ASN ASP SER SEQRES 3 A 113 VAL THR LEU ASP ASP LEU ALA ASP PHE PHE LYS GLN CYS SEQRES 4 A 113 GLY VAL VAL LYS MET ASN LYS ARG THR GLY GLN PRO MET SEQRES 5 A 113 ILE HIS ILE TYR LEU ASP LYS GLU THR GLY LYS PRO LYS SEQRES 6 A 113 GLY ASP ALA THR VAL SER TYR GLU ASP PRO PRO THR ALA SEQRES 7 A 113 LYS ALA ALA VAL GLU TRP PHE ASP GLY LYS ASP PHE GLN SEQRES 8 A 113 GLY SER LYS LEU LYS VAL SER LEU ALA ARG LYS LYS PRO SEQRES 9 A 113 PRO MET ASN SER GLY PRO SER SER GLY
HELIX 1 1 LEU A 374 ALA A 378 1 5 HELIX 2 2 PRO A 420 PHE A 430 1 11
SHEET 1 A 4 ILE A 398 ILE A 400 0 SHEET 2 A 4 ASP A 412 SER A 416 -1 SHEET 3 A 4 ALA A 362 GLN A 366 -1 SHEET 4 A 4 LYS A 441 SER A 443 -1
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000